Rh3AG008400

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017113
Physical Location & Seq
Reverse (-)
542014 .. 545417
3404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG008400.1

Sequence Viewer

Length: 891 bp
ATGGCAGACTCAGATTATCGTTCTCCAATAGTACTCTCTGTAACTCTTCTCCTCCTCTTCGTTACAGTCCTCTTCTTCTCTCCATTAAACCGAAACCAATATCTTTCGCTCAATCTTTTATCTCCTTCCTCCTCCCTATCTAACTCTTCTTCTACTCATCATAACCAACAAACCACCGACAACGACAAAGCCCTGCATGTCGTTTCAGCACCGGCACCGGCGCCATCGCTTCCGCCGTTTCACCAACATGGGCCTCCCTCCACTCTCACTTTGCCTCAAGTACTCAGTCACAGTGTCAAAAACAAGAGCAAAACGCAAAGGATTGAAGAAGAGTTGGCCAGAGCAAGAGCCATTATTCGCAAAGCTATTCTGACGAAGAATTACACCTCTGACAGGAATGAGATTTACATCCCAAGAGGAAGTGTTTACAGAAATCCCTATGCATTTCATCAGAGTCATATAGAAATGGTCAAGACATTCAAGGTCTGGGCCTATAGGGAAGGAGAAGTACCAATGGTCCATGATGGGCCAACTTCGTACCTCTACTCCATAGAGGGCCAGTTCATTTTTGAGATGGAAAGTCGGCCAAGCCCTTTCATGGCCCAGCATCCTGATGAGGCTCATACATTTTTCTTACCATTGAGTGTGTCCAAGATTACTGACTTCCTGTTCAGACCTCACCATGAGACATTTTTTCATCGACTGGGCCGCGTCTTCACCGACTACATTCATGTTGTACAAGAAAAGTATCCCTACTGGAATAGGAGTGGTGGAGCAGACCATTTTATGGTCTCATGTCATGATTGGGTTAGTAAGCTTCTGTTTCTGTATTGTTCATTTTGCAATGAGTTTATTTCCAAGGCTTTGATGTGGATAAACCTTGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

296

Amino Acids

34.08

Weight (kDa)

8.29

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 142 - 269 1.8e-13 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42180 AT3G42180
malus_domestica MD15G1127800.v1.1
pyrus_communis pycom04g21400
rosa_samantha Rh2CG029700 Rh2CG029900 Rh2DG029600 Rh2DG029700 Rh3AG008300 Rh3AG008400 Rh3DG008600 Rh6BG392900 Rh6DG385300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 214, 220
AccB7I CCANNNNNTGG 1 cut(s) 787
AccII CGCG 1 cut(s) 711
AciI CCGC 2 cut(s) 233, 709
AcoI YGGCCR 2 cut(s) 336, 584
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 5 cut(s) 33, 282, 510, 539, 738
AfiI CCNNNNNNNGG 3 cut(s) 393, 598, 787
AgsI TTSAA 2 cut(s) 326, 481
AluBI AGCT 2 cut(s) 365, 817
AluI AGCT 2 cut(s) 365, 817
Alw26I GTCTC 2 cut(s) 680, 796
AoxI GGCC 8 cut(s) 251, 336, 489, 527, 556, 584, 600, 706
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 7 cut(s) 251, 489, 517, 527, 556, 601, 706
AsuHPI GGTGA 3 cut(s) 233, 671, 709
AvaII GGWCC 1 cut(s) 517
BalI TGGCCA 1 cut(s) 338
BanI GGYRCC 2 cut(s) 214, 220
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
BbsI GAAGAC 1 cut(s) 706
BccI CCATC 3 cut(s) 232, 518, 568
BceAI ACGGC 1 cut(s) 220
BciVI GTATCC 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 680, 796
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 224
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 1 cut(s) 709
BlsI GCNGC 1 cut(s) 710
BmcAI AGTACT 2 cut(s) 33, 282
Bme18I GGWCC 1 cut(s) 517
BmgT120I GGNCC 7 cut(s) 251, 489, 517, 527, 556, 601, 706
BmiI GGNNCC 2 cut(s) 216, 222
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 1 cut(s) 616
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 706
BpuEI CTTGAG 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 1 cut(s) 858
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 598, 787
Bse118I RCCGGY 2 cut(s) 211, 217
Bse1I ACTGG 3 cut(s) 559, 708, 761
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 858
BseGI GGATG 2 cut(s) 408, 607
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 3 cut(s) 393, 598, 787
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 2 cut(s) 24, 298
BseNI ACTGG 3 cut(s) 559, 708, 761
BseRI GAGGAG 3 cut(s) 41, 44, 121
BseYI CCCAGC 1 cut(s) 603
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 8 cut(s) 253, 338, 491, 529, 558, 586, 602, 708
BshNI GGYRCC 2 cut(s) 214, 220
BsiSI CCGG 2 cut(s) 212, 218
BslI CCNNNNNNNGG 3 cut(s) 393, 598, 787
BsmAI GTCTC 2 cut(s) 680, 796
BsnI GGCC 8 cut(s) 253, 338, 491, 529, 558, 586, 602, 708
Bso31I GGTCTC 1 cut(s) 796
Bsp1407I TGTACA 1 cut(s) 736
BspACI CCGC 2 cut(s) 233, 709
BspANI GGCC 8 cut(s) 253, 338, 491, 529, 558, 586, 602, 708
BspCNI CTCAG 2 cut(s) 23, 297
BspFNI CGCG 1 cut(s) 711
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 2 cut(s) 216, 222
BspT107I GGYRCC 2 cut(s) 214, 220
BspTNI GGTCTC 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 850
BsrFI RCCGGY 2 cut(s) 211, 217
BsrGI TGTACA 1 cut(s) 736
BsrI ACTGG 3 cut(s) 559, 708, 761
BssAI RCCGGY 2 cut(s) 211, 217
BssECI CCNNGG 1 cut(s) 858
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 67, 293
Bst6I CTCTTC 5 cut(s) 51, 62, 77, 151, 324
BstACI GRCGYC 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 736
BstDEI CTNAG 2 cut(s) 10, 284
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 408, 607
BstFNI CGCG 1 cut(s) 711
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 680, 796
BstNSI RCATGY 2 cut(s) 200, 888
BstSFI CTRYAG 1 cut(s) 493
BstUI CGCG 1 cut(s) 711
BstV2I GAAGAC 1 cut(s) 706
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 8 cut(s) 253, 338, 491, 529, 558, 586, 602, 708
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 408, 607
BtsIMutI CAGTG 1 cut(s) 298
CciI TCATGA 1 cut(s) 799
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 2 cut(s) 211, 217
Cfr13I GGNCC 7 cut(s) 251, 489, 517, 527, 556, 601, 706
CseI GACGC 1 cut(s) 700
Csp6I GTAC 5 cut(s) 32, 281, 509, 538, 737
CviAII CATG 9 cut(s) 197, 248, 521, 598, 683, 731, 795, 800, 885
CviQI GTAC 5 cut(s) 32, 281, 509, 538, 737
DdeI CTNAG 2 cut(s) 10, 284
DinI GGCGCC 1 cut(s) 222
EaeI YGGCCR 2 cut(s) 336, 584
Eam1104I CTCTTC 5 cut(s) 51, 62, 77, 151, 324
EarI CTCTTC 5 cut(s) 51, 62, 77, 151, 324
EciI GGCGGA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 858
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 858
EcoT22I ATGCAT 1 cut(s) 445
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 9 cut(s) 200, 251, 524, 601, 686, 734, 798, 803, 888
FatI CATG 9 cut(s) 196, 247, 520, 597, 682, 730, 794, 799, 884
Fnu4HI GCNGC 1 cut(s) 709
FokI GGATG 2 cut(s) 395, 594
Fsp4HI GCNGC 1 cut(s) 709
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 709
GsaI CCCAGC 1 cut(s) 607
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 8 cut(s) 253, 338, 491, 529, 558, 586, 602, 708
HapII CCGG 2 cut(s) 212, 218
HgaI GACGC 1 cut(s) 700
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 9 cut(s) 200, 251, 524, 601, 686, 734, 798, 803, 888
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 2 cut(s) 8, 454
HpaII CCGG 2 cut(s) 212, 218
HphI GGTGA 3 cut(s) 233, 671, 709
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 5 cut(s) 13, 372, 391, 453, 674
Hpy188III TCNNGA 3 cut(s) 472, 611, 800
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 135, 494
HpyCH4III ACNGT 2 cut(s) 67, 293
HpyCH4V TGCA 4 cut(s) 196, 443, 843, 884
HpyF3I CTNAG 2 cut(s) 10, 284
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 9 cut(s) 200, 251, 524, 601, 686, 734, 798, 803, 888
HspAI GCGC 1 cut(s) 221
KasI GGCGCC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 773
LweI GCATC 1 cut(s) 616
MaeIII GTNAC 3 cut(s) 40, 61, 287
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 1 cut(s) 379
MluNI TGGCCA 1 cut(s) 338
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 2 cut(s) 2, 463
Mox20I TGGCCA 1 cut(s) 338
Mph1103I ATGCAT 1 cut(s) 445
MscI TGGCCA 1 cut(s) 338
MseI TTAA 2 cut(s) 86, 889
MslI CAYNNNNRTG 2 cut(s) 246, 612
Msp20I TGGCCA 1 cut(s) 338
MspI CCGG 2 cut(s) 212, 218
MvnI CGCG 1 cut(s) 711
NarI GGCGCC 1 cut(s) 221
NlaIII CATG 9 cut(s) 200, 251, 524, 601, 686, 734, 798, 803, 888
NlaIV GGNNCC 2 cut(s) 216, 222
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 2 cut(s) 200, 888
PagI TCATGA 1 cut(s) 799
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 1 cut(s) 710
PleI GAGTC 2 cut(s) 2, 462
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 2 cut(s) 2, 462
PspFI CCCAGC 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 216, 222
PspPI GGNCC 7 cut(s) 251, 489, 517, 527, 556, 601, 706
RsaI GTAC 5 cut(s) 33, 282, 510, 539, 738
RsaNI GTAC 5 cut(s) 32, 281, 509, 538, 737
RseI CAYNNNNRTG 2 cut(s) 246, 612
SaqAI TTAA 2 cut(s) 86, 889
SatI GCNGC 1 cut(s) 709
Sau96I GGNCC 7 cut(s) 251, 489, 517, 527, 556, 601, 706
ScaI AGTACT 2 cut(s) 33, 282
SchI GAGTC 2 cut(s) 2, 463
SetI ASST 7 cut(s) 367, 389, 486, 543, 679, 819, 882
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 493
SfoI GGCGCC 1 cut(s) 222
SgrAI CRCCGGYG 1 cut(s) 217
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 246, 612
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 1 cut(s) 379
SsiI CCGC 2 cut(s) 233, 709
SspDI GGCGCC 1 cut(s) 220
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 2 cut(s) 67, 293
TaqI TCGA 1 cut(s) 700
TasI AATT 1 cut(s) 379
TatI WGTACW 3 cut(s) 31, 280, 736
TauI GCSGC 1 cut(s) 711
Tru1I TTAA 2 cut(s) 86, 889
Tru9I TTAA 2 cut(s) 86, 889
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 6 cut(s) 437, 553, 586, 686, 719, 825
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 1 cut(s) 517
XagI CCTNNNNNAGG 1 cut(s) 391
XceI RCATGY 2 cut(s) 200, 888
ZrmI AGTACT 2 cut(s) 33, 282
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.