Rh6BG392900

glycosyltransferase At5g11130

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
62181197 .. 62184781
3585 bp
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UTR
Exon/CDS
Intron
Rh6BG392900.1

Sequence Viewer

Length: 216 bp
ATGGAAGAAGGGTTAGCTAAGGCGAGAGCTGCGATAAGAGAAGCAGGTCGATCAAAACGATACACATCATACAGAAAGGGGGGATTTGTGCCCCGAGGATCCGTTTACATCAACCCTTATTCCTTTCATCAGTTAAGATCATATCTTTCGCTCCCTGCTTCACTTCTTCGATCTGTTATTAGACTCAGCACCGGATGTTTCAGTTGGCAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.04

Weight (kDa)

10.68

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017113)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AclWI GGATC 2 cut(s) 93, 106
AluBI AGCT 2 cut(s) 17, 29
AluI AGCT 2 cut(s) 17, 29
AlwI GGATC 2 cut(s) 93, 106
Ama87I CYCGRG 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 93
BamHI GGATCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 35
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 191
Bse8I GATNNNNATC 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 64
BseMII CTCAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 4 cut(s) 50, 98, 137, 170
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 93, 106
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 4 cut(s) 50, 98, 137, 170
BstDEI CTNAG 2 cut(s) 18, 185
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 4 cut(s) 53, 101, 140, 173
BstMBI GATC 4 cut(s) 50, 98, 137, 170
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BtsCI GGATG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 35
CviJI RGCY 2 cut(s) 17, 29
CviKI_1 RGCY 2 cut(s) 17, 29
DdeI CTNAG 2 cut(s) 18, 185
DpnI GATC 4 cut(s) 52, 100, 139, 172
DpnII GATC 4 cut(s) 50, 98, 137, 170
Eco88I CYCGRG 1 cut(s) 93
FaiI YATR 2 cut(s) 70, 142
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 192
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 18, 185
Kzo9I GATC 4 cut(s) 50, 98, 137, 170
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 30, 168, 205
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 4 cut(s) 52, 100, 139, 172
MboI GATC 4 cut(s) 50, 98, 137, 170
MboII GAAGA 2 cut(s) 17, 158
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 1 cut(s) 89
MseI TTAA 1 cut(s) 134
MspI CCGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 4 cut(s) 50, 98, 137, 170
NlaIV GGNNCC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 98
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 4 cut(s) 50, 98, 137, 170
SchI GAGTC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 93
SetI ASST 3 cut(s) 19, 31, 49
SgeI CNNG 6 cut(s) 36, 57, 105, 107, 167, 204
TaqI TCGA 2 cut(s) 49, 169
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.