Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017113

Physical Location & Seq

Genomic Coordinates Forward (+)

2228636 .. 2230633

Gene Structure 1998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACTGGAAGCTTTCGTTGCCCTGCACTTTTTTTGTTAACTACATTGTCTTGTCTTCTGTTCTTCCACCTAATCTTCACACCTTTATCGTCTGAAACCCATCTCAGTATTTCTCCGGTATCCTCTTTCACTACACCTTTGACTAATCCAGAAAAGACCAGCAACTCAACTCCATCGACACATGTAGCTTCTTTAGATGAGGTTCTCACCAGCTCCATGTACCGAAGGATTAGGAGCAAGGTTGACGGCACCAAAGAGAAGACTAGTTTGGAGAGAATTGAAGAAGATTTAGCTAAAGCACGAGCATCGATTCTCAGAGCAATTCAGTTCGAAAACTACACATCAGAGAAAGTACAGGGTTTTGTCCCAAGAGGAAGCATTTACAAAAACCCTTATGCTTTTCACCAGTTGAGTTTTACGAGTCACCTAGAAATGATGAAGAGGTTCAAGATGTGGAGCTACGAGGAAGGAGAACAACCCTTGGTCCATTTTGGTCCTATGAATGATATATATGGCATTGAAGGACACTTCATAGATGAAATAGAAAGGGAGGGGAGCCCATTTAGGGCTACACATCCTGATGAGGCACACATGTTTTTCCTCCCATTTAGTGTAGCTAACATTGTTCACTATGTTTACTTGCCTATCACTAAAAAACAGGACTACCACCGTGATCGTCTACAACAGATTGCCAGGGACTACATTGGCGTTGTGGCACATAAGTATCCCTATTGGAATAGGAGCAAAGGTGCCGACCATTTTATGGCTTCATGTCACGATTGGTTCAATCAAGGCCAGGGAAGCAAGTCTCAAGACAAATGCCCACCACATGAGATTATGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010393 GO:0010398 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0035252 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045488 GO:0045489 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

282

Amino Acids

32.56

Weight (kDa)

6.95

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	145 - 266	6.2e-16	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42180 AT3G42180
malus_domestica	MD15G1127800.v1.1
pyrus_communis	pycom04g21400
rosa_samantha	Rh2CG029700 Rh2CG029900 Rh2DG029600 Rh2DG029700 Rh3AG008300 Rh3AG008400 Rh3DG008600 Rh6BG392900 Rh6DG385300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	248, 749
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	841
AfaI	GTAC	2 cut(s)	221, 354
AfiI	CCNNNNNNNGG	2 cut(s)	565, 763
AflIII	ACRYGT	2 cut(s)	181, 591
AgsI	TTSAA	4 cut(s)	281, 448, 521, 787
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	2 cut(s)	692, 795
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	12, 188, 213, 293, 459, 617
AluI	AGCT	6 cut(s)	12, 188, 213, 293, 459, 617
Alw26I	GTCTC	1 cut(s)	813
AoxI	GGCC	1 cut(s)	793
ApoI	RAATTY	1 cut(s)	841
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	484, 494
AsuHPI	GGTGA	3 cut(s)	199, 395, 416
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	484, 494
BaeI	ACNNNNGTAYC	2 cut(s)	707, 740
BanI	GGYRCC	2 cut(s)	248, 749
BanII	GRGCYC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	47, 266
BccI	CCATC	2 cut(s)	108, 181
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	2 cut(s)	694, 797
BciVI	GTATCC	2 cut(s)	130, 735
BcoDI	GTCTC	1 cut(s)	813
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	2 cut(s)	264, 428
BfuI	GTATCC	2 cut(s)	130, 735
Bme1390I	CCNGG	2 cut(s)	694, 797
Bme18I	GGWCC	2 cut(s)	484, 494
BmgT120I	GGNCC	2 cut(s)	484, 494
BmiI	GGNNCC	3 cut(s)	250, 557, 751
BmrFI	CCNGG	2 cut(s)	694, 797
BmsI	GCATC	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	47, 266
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	795
Bsa29I	ATCGAT	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	480, 693, 796
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 763
Bse1I	ACTGG	2 cut(s)	10, 406
BseBI	CCWGG	2 cut(s)	694, 797
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	480, 693, 796
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	565, 763
BseMII	CTCAG	2 cut(s)	118, 328
BseNI	ACTGG	2 cut(s)	10, 406
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	795
BshNI	GGYRCC	2 cut(s)	248, 749
BshVI	ATCGAT	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	350, 710
BslI	CCNNNNNNNGG	2 cut(s)	565, 763
BsmAI	GTCTC	1 cut(s)	813
BsmFI	GGGAC	2 cut(s)	350, 710
BsnI	GGCC	1 cut(s)	795
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	1 cut(s)	673
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	2 cut(s)	117, 327
BspDI	ATCGAT	1 cut(s)	308
BspLI	GGNNCC	3 cut(s)	250, 557, 751
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	2 cut(s)	248, 749
BsrI	ACTGG	2 cut(s)	10, 406
BssECI	CCNNGG	3 cut(s)	480, 693, 796
BssMI	GATC	1 cut(s)	673
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	694, 797
Bst4CI	ACNGT	1 cut(s)	671
Bst6I	CTCTTC	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	104, 314
BstF5I	GGATG	1 cut(s)	574
BstKTI	GATC	1 cut(s)	676
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	1 cut(s)	673
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 801
BstNI	CCWGG	2 cut(s)	694, 797
BstNSI	RCATGY	2 cut(s)	185, 595
BstSCI	CCNGG	2 cut(s)	692, 795
BstV2I	GAAGAC	2 cut(s)	47, 266
Bsu15I	ATCGAT	1 cut(s)	308
BsuI	GTATCC	2 cut(s)	130, 735
BsuRI	GGCC	1 cut(s)	795
BsuTUI	ATCGAT	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	484, 494
ClaI	ATCGAT	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	220, 353
CviAII	CATG	5 cut(s)	182, 217, 592, 771, 830
CviQI	GTAC	2 cut(s)	220, 353
DdeI	CTNAG	2 cut(s)	104, 314
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	484, 494
EcoRII	CCWGG	2 cut(s)	692, 795
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	5 cut(s)	185, 220, 595, 774, 833
FaqI	GGGAC	2 cut(s)	350, 710
FatI	CATG	5 cut(s)	181, 216, 591, 770, 829
FblI	GTMKAC	1 cut(s)	679
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	560
FspBI	CTAG	2 cut(s)	264, 428
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	5 cut(s)	185, 220, 595, 774, 833
HincII	GTYRAC	2 cut(s)	39, 244
HindII	GTYRAC	2 cut(s)	39, 244
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	2 cut(s)	310, 421
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	199, 395, 416
Hpy166II	GTNNAC	5 cut(s)	39, 244, 628, 637, 680
Hpy188I	TCNGA	3 cut(s)	94, 317, 346
Hpy188III	TCNNGA	5 cut(s)	149, 448, 578, 776, 812
Hpy8I	GTNNAC	5 cut(s)	39, 244, 628, 637, 680
HpyAV	CCTTC	3 cut(s)	219, 461, 515
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 801
HpyF3I	CTNAG	2 cut(s)	104, 314
Hsp92II	CATG	5 cut(s)	185, 220, 595, 774, 833
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	673
LmnI	GCTCC	5 cut(s)	218, 234, 456, 555, 741
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	2 cut(s)	264, 428
MaeIII	GTNAC	2 cut(s)	422, 773
MalI	GATC	1 cut(s)	675
MboI	GATC	1 cut(s)	673
MboII	GAAGA	7 cut(s)	47, 55, 67, 271, 293, 296, 451
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	3 cut(s)	276, 321, 841
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	8 cut(s)	133, 193, 365, 435, 457, 544, 577, 611
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	694, 797
MvaI	CCWGG	2 cut(s)	694, 797
MwoI	GCNNNNNNNGC	2 cut(s)	18, 801
NdeII	GATC	1 cut(s)	673
NlaIII	CATG	5 cut(s)	185, 220, 595, 774, 833
NlaIV	GGNNCC	3 cut(s)	250, 557, 751
NmuCI	GTSAC	2 cut(s)	422, 773
NspI	RCATGY	2 cut(s)	185, 595
NspV	TTCGAA	1 cut(s)	330
PciI	ACATGT	2 cut(s)	181, 591
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	763
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PscI	ACATGT	2 cut(s)	181, 591
Psp6I	CCWGG	2 cut(s)	692, 795
PspGI	CCWGG	2 cut(s)	692, 795
PspN4I	GGNNCC	3 cut(s)	250, 557, 751
PspPI	GGNCC	2 cut(s)	484, 494
RsaI	GTAC	2 cut(s)	221, 354
RsaNI	GTAC	2 cut(s)	220, 353
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	673
Sau96I	GGNCC	2 cut(s)	484, 494
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	694, 797
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	2 cut(s)	484, 494
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	3 cut(s)	276, 321, 841
SspMI	CTAG	2 cut(s)	264, 428
StyD4I	CCNGG	2 cut(s)	692, 795
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	671
TaqI	TCGA	3 cut(s)	176, 308, 330
TasI	AATT	3 cut(s)	276, 321, 841
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	2 cut(s)	422, 773
Tsp45I	GTSAC	2 cut(s)	422, 773
TspDTI	ATGAA	5 cut(s)	452, 515, 520, 552, 759
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	484, 494
XapI	RAATTY	1 cut(s)	841
XceI	RCATGY	2 cut(s)	185, 595
XmiI	GTMKAC	1 cut(s)	679
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	264, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.