Rh6DG385300

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017113
Physical Location & Seq
Forward (+)
57832325 .. 57835486
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG385300.1

Sequence Viewer

Length: 666 bp
ATGGGTGGCTTGGGTTGCACCAGCACTTGTTATCTATTCCCATCTCTTTTCCTCATACTTTTCTTCTCTTTCATAAACCACCACTTCCATTACTTGCCATTCCCTTACCATAAAAATTCCAAACTCTCCCTGCCGCACCATCCCATTTTCTCCCTCCCAAACAATTCCACACTCTCCCTCACCGAAAATTCCACCCTCTCCATCCCAAACAATTCCAGACTCTCCTTTCCGATAAGCTCCAAACTCTCCATTCCGAGTAACTCCACACTATTCTCCAACCAAACTCAAGTCACCGATGATATATACCTCAACGATCGTCTCAACAATTCAACCACAAATAGCACTGAATCTACTCAACATGTCATTACAGTGCATGAGAAGAATCCCTTTGAGAAAATGGAAGAAGGGTTAGCTAGGGCGAGAGCTGCGATAAGAGAAGCAGGTCGATCAAAACGATACACATCATACAGAAAGGGGGGATTTGTGCCCCGAGGTTCCGTTTACATCAACCCTTATTCCTTTCATCAGTTAAGATCATATCTTTCGCTCCCTGCTTCACTTCTTCGATCTGTTATTAGACTCAGAGCCACATTGAGATGGAAAAGCGATTTCGAATTTGGCCATACAAGGAAGGAGAGCCACCACTCTTCTACAACGGTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

221

Amino Acids

25.2

Weight (kDa)

9.91

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42180 AT3G42180
malus_domestica MD15G1127800.v1.1
pyrus_communis pycom04g21400
rosa_samantha Rh2CG029700 Rh2CG029900 Rh2DG029600 Rh2DG029700 Rh3AG008300 Rh3AG008400 Rh3DG008600 Rh6BG392900 Rh6DG385300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 431
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 3 cut(s) 115, 187, 614
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 1 cut(s) 330
AluBI AGCT 3 cut(s) 237, 413, 425
AluI AGCT 3 cut(s) 237, 413, 425
Alw26I GTCTC 1 cut(s) 323
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 3 cut(s) 115, 187, 614
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 172, 283
AsuII TTCGAA 1 cut(s) 612
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 489
BalI TGGCCA 1 cut(s) 621
BbvI GCAGC 1 cut(s) 412
BccI CCATC 4 cut(s) 49, 147, 209, 591
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 2 cut(s) 134, 426
BlsI GCNGC 2 cut(s) 135, 427
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 1 cut(s) 496
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 661
Bse8I GATNNNNATC 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 2 cut(s) 139, 201
BseJI GATNNNNATC 1 cut(s) 460
BseMII CTCAG 1 cut(s) 595
BseNI ACTGG 1 cut(s) 661
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 621
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 4 cut(s) 313, 446, 533, 566
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 1 cut(s) 594
BspLI GGNNCC 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 612
BsrI ACTGG 1 cut(s) 661
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 4 cut(s) 313, 446, 533, 566
Bst4CI ACNGT 2 cut(s) 370, 658
Bst6I CTCTTC 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 612
BstDEI CTNAG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 139, 201
BstKTI GATC 4 cut(s) 316, 449, 536, 569
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 4 cut(s) 313, 446, 533, 566
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 15, 425
BstNSI RCATGY 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 621
BtsCI GGATG 2 cut(s) 139, 201
BtsIMutI CAGTG 2 cut(s) 342, 375
BveI ACCTGC 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 658
CviAII CATG 2 cut(s) 359, 374
CviJI RGCY 7 cut(s) 9, 237, 413, 425, 587, 621, 639
CviKI_1 RGCY 7 cut(s) 9, 237, 413, 425, 587, 621, 639
DdeI CTNAG 1 cut(s) 581
DpnI GATC 4 cut(s) 315, 448, 535, 568
DpnII GATC 4 cut(s) 313, 446, 533, 566
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 2 cut(s) 362, 377
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 2 cut(s) 358, 373
Fnu4HI GCNGC 2 cut(s) 134, 426
FokI GGATG 2 cut(s) 126, 188
Fsp4HI GCNGC 2 cut(s) 134, 426
FspBI CTAG 1 cut(s) 414
GluI GCNGC 2 cut(s) 134, 426
HaeIII GGCC 1 cut(s) 621
Hin1II CATG 2 cut(s) 362, 377
HinfI GANTC 4 cut(s) 219, 347, 382, 579
HphI GGTGA 2 cut(s) 172, 283
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 3 cut(s) 231, 255, 584
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 2 cut(s) 398, 625
HpyCH4III ACNGT 2 cut(s) 370, 658
HpyCH4V TGCA 2 cut(s) 18, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 425
HpyF3I CTNAG 1 cut(s) 581
Hsp92II CATG 2 cut(s) 362, 377
Kzo9I GATC 4 cut(s) 313, 446, 533, 566
LmnI GCTCC 2 cut(s) 242, 552
LpnPI CCDG 5 cut(s) 34, 143, 229, 426, 564
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 257, 289
MalI GATC 4 cut(s) 315, 448, 535, 568
MboI GATC 4 cut(s) 313, 446, 533, 566
MboII GAAGA 5 cut(s) 55, 391, 413, 554, 639
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 6 cut(s) 115, 163, 187, 211, 325, 614
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 2 cut(s) 213, 573
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 6 cut(s) 62, 164, 188, 206, 317, 485
Mox20I TGGCCA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 621
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 2 cut(s) 368, 595
Msp20I TGGCCA 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 15, 425
NdeII GATC 4 cut(s) 313, 446, 533, 566
NlaIII CATG 2 cut(s) 362, 377
NlaIV GGNNCC 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 362
NspV TTCGAA 1 cut(s) 612
PciI ACATGT 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PfeI GAWTC 2 cut(s) 347, 382
PkrI GCNGC 2 cut(s) 135, 427
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 2 cut(s) 213, 573
PpsI GAGTC 2 cut(s) 213, 573
PscI ACATGT 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 1 cut(s) 658
PvuI CGATCG 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 368, 595
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 2 cut(s) 134, 426
Sau3AI GATC 4 cut(s) 313, 446, 533, 566
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 2 cut(s) 213, 573
SduI GDGCHC 1 cut(s) 489
SetI ASST 6 cut(s) 239, 309, 415, 427, 445, 496
SfuI TTCGAA 1 cut(s) 612
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 368, 595
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 6 cut(s) 115, 163, 187, 211, 325, 614
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 370, 658
TaqI TCGA 3 cut(s) 445, 565, 612
TasI AATT 6 cut(s) 115, 163, 187, 211, 325, 614
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 347, 382
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 2 cut(s) 349, 375
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 61, 512
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 2 cut(s) 349, 375
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 3 cut(s) 115, 187, 614
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.