Rh3AG008300

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
535441 .. 537056
1616 bp
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UTR
Exon/CDS
Intron
Rh3AG008300.1

Sequence Viewer

Length: 159 bp
ATGGAAAAAAGCAATACGAGCAAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCTATCCACAAAGCAGTTCTTACAAAGAACTATACATCTGATAGACAAGAGATTTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATGCATTTCATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

6.08

Weight (kDa)

9.77

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017113)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 1 cut(s) 131
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 1 cut(s) 65
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 110
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 41
BsnI GGCC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 129
BspANI GGCC 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 129
BstF5I GGATG 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 18, 53
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 111
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 2 cut(s) 41, 56
CviKI_1 RGCY 2 cut(s) 41, 56
CviQI GTAC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 148
FaiI YATR 2 cut(s) 87, 144
FalI AAGNNNNNCTT 2 cut(s) 57, 89
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 53
LpnPI CCDG 2 cut(s) 55, 130
Lsp1109I GCAGC 1 cut(s) 65
MfeI CAATTG 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 2 cut(s) 22, 113
Mox20I TGGCCA 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 148
MscI TGGCCA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 41
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 18, 53
NsiI ATGCAT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 55
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 1 cut(s) 54
SetI ASST 1 cut(s) 58
SgeI CNNG 6 cut(s) 30, 34, 54, 60, 113, 129
Sse9I AATT 1 cut(s) 35
TasI AATT 1 cut(s) 35
TatI WGTACW 1 cut(s) 129
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.