MD15G1183800.v1.1

PP-loop family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008644
Physical Location & Seq
Reverse (-)
14519583 .. 14523589
4007 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1183800.v1.1.491

Sequence Viewer

Length: 2088 bp
ATGGCGCGAGCGGTAATCCTACCCTCTCAAACCAGTACCCAGACCTTGCTTTTTGCCATTCCCCGAATACCCCTAACGACATGGAAACTTCCGTTCATGTCCCGCCAAGTTCTCTGCAAGTGCTCGTCCTCCCAAGCAGCCCCGGCCGCCGCAGTCGTCGACGTGGCCAAGTACAAGGAAGCTTTCGCCAAACGAATGGCCATGGCCGGCCTCAAACCCCACCACCGCCTCGCTATTGGAGTTTCTGGAGGTCCAGACAGCATGGCGTTATGCGTTTTATCTGCCCACTGGAAAGCTCAAGACTTTAGTGCGAAATGTGACAATGGCGGCTTCATTGACGGGCTTTTAGCAATAATTGTGGATCATGGGCTGCGCGCTGAGAGCAAAGAGGAGGCCAACACTGTCTCCAATCGGGTCTCGAAAATGGGAATCAGAAGTTGCATTGCCTGCTGTGATTGGCTAGATGGTCACCCAAAACAAGGTCACTTGCAAGAAGCAGCCCGTGACATGAGGTACGAAATGTTTCAGAACATCTGCATCCAGAACCGGATTGGTGTGTTACTTATTGCACATCATGCTGATGACCAGGCTGAGTTATTTGTTCTCAGACTATCTCGCAATAGCGGTGTTCTTGGACTTGCTGGTATGCCTTTCACATCTCAAATTTTCTCTACGCATACCCATTCTTGTGCCGAAGTTTCCAGAAACCATGGTATTCTTGTTGTACGTCCACTCTTGGATCTTGTGAAAGAAGATATGTACAAGATATGTGAAGGAAGTAATCAGGTCTGGGTGGAAGATCCAACGAATCAAAGCCAGTTATATGCTCGTAACAGAATTCGATTGTACTTAAAGGACTCAACATGTGCATTCAGGTCGGAGCTACAAGCACTTATTGCTGCCTGTCGCAAAATACGCAGATACGTTGATCAAATTTGCAGTAATTTGATAAGTCAAGCAGTGACTTTTACGGATCTTGGATATGCTGTTATTGATTTGGAGATTCTTAACCAATCAGAAATCGAGGACATATGCATGACAAAGTTTATTGCTTTGGTTTTGAAGTTCATCTCACAAAGGAACAGGCCAATTAGAGGTGGCACTTCAAAATTGCTTTTGAATTACATGAGTACTTTACCATGCAAGACCTCCTTTACTGCAGCTGGCTGTTACATTTCTCCGGCTCCTGGTTCTAGAGGCCTGAAAGCTCTAGTTTGTGTTTCTGTCGATAGTCCTCTACCTTTAAAGGTGGGACTATCCCGATTACACTTTCAGATTGAACAGGAACACAGTACTCCAGATGAGATAGAGCAAATTATATCAGATAGCATATCGTATGCAGATTCTTTGGTTCCAAATAAATCAGATGTTCATTTCTTGGAAGGAAATCCTGAATCGATTCTAACCGGAGCCAGGAAACTCGGTATGATTAGCGAGTCAACCCAAACAAATATCCTTTTATTGCACCAGGAAGAGATTAAGAATTTCAAGTCTAGTAAAGTCGCGGCTGACTACAAGTCAGAGCATGGAGTCAAATCTGCTAGTACATCACGGAGCGAACAACTTCAACCTGGGCAAATATGTTGCTTCATGGACCGGTTCTTTGTCACGTGGAATTTGAGTGAGGAAGATACTGACGATGCAACTTCCGAGGAAGCAAATCTTGATGGGGTTTTGGAGGCAGAAAGTCGCTACTGTTGTTGCAGATCTTGTGGTTTTGGTCATGACACGGTAGTTGAGGTGCGCAACATGATTGAACCTGATTGGCTGTATCTTGCCAACTTGTCGAAGTGTCAGACCTCGGAAAACTTTCAAGAACAAAGACATTCTCTCGATAACGGGCTAGAGCAAACAGAAGAGAAGACGAACAAGTGTCTAGATTATGCAAGGCTCTCGGCACAAAGAGCTCTTGTATCCCTGAGGTTCATCCCTCTCGCTGCAAGAAGAGGCTTGCCTGTCCTAGTCAACGGTGAAGGACTACTGCTAAGCATCCCAAGCATTAGCTTCAAACACTGCCCACGCTTAGCAACATCTGCAACATTCAAGCCGAAAGTACCACTTGGCGGAGGTCATACTTCGTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP_bind_3

Protein Analysis

696

Amino Acids

76.9

Weight (kDa)

7.23

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_3 PF01171 77 - 281 9e-50 PP-loop domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1745
AccBSI CCGCTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 159
AccII CGCG 3 cut(s) 7, 375, 1505
AciI CCGC 9 cut(s) 11, 103, 147, 150, 226, 327, 624, 1505, 2064
AclWI GGATC 4 cut(s) 369, 747, 794, 981
AcoI YGGCCR 4 cut(s) 144, 165, 198, 204
AcsI RAATTY 5 cut(s) 663, 837, 933, 1483, 1615
AcvI CACGTG 1 cut(s) 1611
AfiI CCNNNNNNNGG 5 cut(s) 479, 1094, 1187, 1413, 2063
AflIII ACRYGT 1 cut(s) 863
AgeI ACCGGT 1 cut(s) 1596
AhdI GACNNNNNGTC 1 cut(s) 1516
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 5 cut(s) 585, 1186, 1412, 1467, 1570
AluBI AGCT 7 cut(s) 182, 296, 883, 1163, 1208, 1907, 2004
AluI AGCT 7 cut(s) 182, 296, 883, 1163, 1208, 1907, 2004
Alw21I GWGCWC 2 cut(s) 125, 1909
Alw26I GTCTC 2 cut(s) 409, 421
AlwI GGATC 4 cut(s) 369, 747, 794, 981
AoxI GGCC 8 cut(s) 144, 165, 198, 204, 208, 393, 1085, 1198
ApeKI GCWGC 6 cut(s) 137, 370, 497, 899, 1160, 1937
ApoI RAATTY 5 cut(s) 663, 837, 933, 1483, 1615
ArsI GACNNNNNNTTYG 2 cut(s) 1586, 1618
AsiGI ACCGGT 1 cut(s) 1596
Asp700I GAANNNNTTC 4 cut(s) 522, 1398, 1563, 1809
AspLEI GCGC 4 cut(s) 7, 375, 377, 1746
AspS9I GGNCC 2 cut(s) 251, 1594
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 461, 1982
AvaII GGWCC 2 cut(s) 251, 1594
AxyI CCTNAGG 1 cut(s) 1919
BalI TGGCCA 2 cut(s) 167, 200
BanII GRGCYC 1 cut(s) 1909
BbrPI CACGTG 1 cut(s) 1611
BbsI GAAGAC 1 cut(s) 1868
Bbv12I GWGCWC 2 cut(s) 125, 1909
BbvI GCAGC 6 cut(s) 149, 357, 509, 886, 1172, 1924
BccI CCATC 2 cut(s) 458, 1661
BcgI CGANNNNNNTGC 4 cut(s) 858, 892, 1875, 1909
BciT130I CCWGG 5 cut(s) 587, 1188, 1414, 1469, 1572
BciVI GTATCC 1 cut(s) 1924
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 409, 421
BfaI CTAG 9 cut(s) 461, 1194, 1211, 1494, 1542, 1844, 1877, 1961, 2086
BfmI CTRYAG 1 cut(s) 1158
BfuI GTATCC 1 cut(s) 1924
BglII AGATCT 1 cut(s) 1706
BlpI GCTNAGC 2 cut(s) 1985, 2023
BmcAI AGTACT 2 cut(s) 1132, 1294
Bme1390I CCNGG 6 cut(s) 143, 587, 1188, 1414, 1469, 1572
Bme18I GGWCC 2 cut(s) 251, 1594
BmeRI GACNNNNNGTC 1 cut(s) 1516
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 251, 1594
BmiI GGNNCC 3 cut(s) 1185, 1353, 1411
BmrFI CCNGG 6 cut(s) 143, 587, 1188, 1414, 1469, 1572
BmsI GCATC 3 cut(s) 546, 1630, 1998
BpiI GAAGAC 1 cut(s) 1868
BpmI CTGGAG 2 cut(s) 267, 1281
Bpu1102I GCTNAGC 2 cut(s) 1985, 2023
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 1397
BsaAI YACGTR 1 cut(s) 1611
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 6 cut(s) 141, 201, 709, 1571, 1650, 1800
BsaWI WCCGGW 3 cut(s) 546, 1406, 1596
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 5 cut(s) 479, 1094, 1187, 1413, 2063
Bse118I RCCGGY 2 cut(s) 206, 1596
Bse1I ACTGG 3 cut(s) 33, 293, 817
Bse21I CCTNAGG 1 cut(s) 1919
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 5 cut(s) 587, 1188, 1414, 1469, 1572
BseCI ATCGAT 1 cut(s) 1397
BseDI CCNNGG 6 cut(s) 141, 201, 709, 1571, 1650, 1800
BseGI GGATG 3 cut(s) 537, 1926, 1989
BseLI CCNNNNNNNGG 5 cut(s) 479, 1094, 1187, 1413, 2063
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 369, 582, 619, 1910
BseNI ACTGG 3 cut(s) 33, 293, 817
BsePI GCGCGC 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 404
BseX3I CGGCCG 1 cut(s) 144
BseXI GCAGC 6 cut(s) 149, 357, 509, 886, 1172, 1924
Bsh1236I CGCG 3 cut(s) 7, 375, 1505
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 8 cut(s) 146, 167, 200, 206, 210, 395, 1087, 1200
BshTI ACCGGT 1 cut(s) 1596
BshVI ATCGAT 1 cut(s) 1397
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 125, 1909
BsiSI CCGG 6 cut(s) 143, 207, 547, 1181, 1407, 1597
BslFI GGGAC 2 cut(s) 85, 1266
BslI CCNNNNNNNGG 5 cut(s) 479, 1094, 1187, 1413, 2063
BsmAI GTCTC 2 cut(s) 409, 421
BsmFI GGGAC 2 cut(s) 85, 1266
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 8 cut(s) 146, 167, 200, 206, 210, 395, 1087, 1200
Bso31I GGTCTC 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 125, 1909
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
Bsp1720I GCTNAGC 2 cut(s) 1985, 2023
Bsp19I CCATGG 2 cut(s) 201, 709
BspACI CCGC 9 cut(s) 11, 103, 147, 150, 226, 327, 624, 1505, 2064
BspANI GGCC 8 cut(s) 146, 167, 200, 206, 210, 395, 1087, 1200
BspCNI CTCAG 4 cut(s) 370, 583, 618, 1911
BspDI ATCGAT 1 cut(s) 1397
BspFNI CGCG 3 cut(s) 7, 375, 1505
BspHI TCATGA 1 cut(s) 1723
BspLI GGNNCC 3 cut(s) 1185, 1353, 1411
BspMAI CTGCAG 1 cut(s) 1162
BspPI GGATC 4 cut(s) 369, 747, 794, 981
BspTNI GGTCTC 1 cut(s) 421
BsrBI CCGCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 2 cut(s) 206, 1596
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 3 cut(s) 33, 293, 817
BssAI RCCGGY 2 cut(s) 206, 1596
BssECI CCNNGG 6 cut(s) 141, 201, 709, 1571, 1650, 1800
BssHII GCGCGC 1 cut(s) 373
BssMI GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
BssT1I CCWWGG 2 cut(s) 201, 709
Bst2UI CCWGG 5 cut(s) 587, 1188, 1414, 1469, 1572
Bst4CI ACNGT 5 cut(s) 403, 1292, 1697, 1732, 1970
Bst6I CTCTTC 3 cut(s) 1467, 1851, 1939
BstAPI GCANNNNNTGC 4 cut(s) 447, 575, 896, 2033
BstAUI TGTACA 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 1611
BstC8I GCNNGC 6 cut(s) 9, 208, 375, 448, 1165, 1952
BstDEI CTNAG 6 cut(s) 378, 591, 605, 1919, 1985, 2023
BstDSI CCRYGG 2 cut(s) 201, 709
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 3 cut(s) 537, 1926, 1989
BstFNI CGCG 3 cut(s) 7, 375, 1505
BstHHI GCGC 4 cut(s) 7, 375, 377, 1746
BstKTI GATC 6 cut(s) 364, 742, 802, 931, 976, 1709
BstMAI GTCTC 2 cut(s) 409, 421
BstMBI GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
BstMCI CGRYCG 1 cut(s) 147
BstNI CCWGG 5 cut(s) 587, 1188, 1414, 1469, 1572
BstNSI RCATGY 1 cut(s) 867
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 6 cut(s) 141, 585, 1186, 1412, 1467, 1570
BstSFI CTRYAG 1 cut(s) 1158
BstUI CGCG 3 cut(s) 7, 375, 1505
BstV1I GCAGC 6 cut(s) 149, 357, 509, 886, 1172, 1924
BstV2I GAAGAC 1 cut(s) 1868
BstX2I RGATCY 4 cut(s) 739, 799, 973, 1706
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 4 cut(s) 739, 799, 973, 1706
BstZI CGGCCG 1 cut(s) 144
Bsu15I ATCGAT 1 cut(s) 1397
Bsu36I CCTNAGG 1 cut(s) 1919
BsuI GTATCC 1 cut(s) 1924
BsuRI GGCC 8 cut(s) 146, 167, 200, 206, 210, 395, 1087, 1200
BsuTUI ATCGAT 1 cut(s) 1397
BtgI CCRYGG 2 cut(s) 201, 709
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 3 cut(s) 537, 1926, 1989
BtsI GCAGTG 2 cut(s) 966, 2011
BtsIMutI CAGTG 4 cut(s) 286, 399, 966, 2011
Cac8I GCNNGC 6 cut(s) 9, 208, 375, 448, 1165, 1952
CciI TCATGA 1 cut(s) 1723
CfoI GCGC 4 cut(s) 7, 375, 377, 1746
Cfr10I RCCGGY 2 cut(s) 206, 1596
Cfr13I GGNCC 2 cut(s) 251, 1594
ClaI ATCGAT 1 cut(s) 1397
CspAI ACCGGT 1 cut(s) 1596
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
DdeI CTNAG 6 cut(s) 378, 591, 605, 1919, 1985, 2023
DpnI GATC 6 cut(s) 363, 741, 801, 930, 975, 1708
DpnII GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
DraI TTTAAA 1 cut(s) 1245
DriI GACNNNNNGTC 1 cut(s) 1516
EaeI YGGCCR 4 cut(s) 144, 165, 198, 204
EagI CGGCCG 1 cut(s) 144
Eam1104I CTCTTC 3 cut(s) 1467, 1851, 1939
Eam1105I GACNNNNNGTC 1 cut(s) 1516
EarI CTCTTC 3 cut(s) 1467, 1851, 1939
EciI GGCGGA 1 cut(s) 2079
Ecl136II GAGCTC 1 cut(s) 1907
EclXI CGGCCG 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 201, 709
Eco147I AGGCCT 1 cut(s) 1200
Eco24I GRGCYC 1 cut(s) 1909
Eco31I GGTCTC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 251, 1594
Eco52I CGGCCG 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 1907
Eco72I CACGTG 1 cut(s) 1611
Eco81I CCTNAGG 1 cut(s) 1919
Eco91I GGTNACC 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 1907
EcoO65I GGTNACC 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 5 cut(s) 585, 1186, 1412, 1467, 1570
EcoT14I CCWWGG 2 cut(s) 201, 709
EcoT22I ATGCAT 1 cut(s) 1037
EcoT38I GRGCYC 1 cut(s) 1909
ErhI CCWWGG 2 cut(s) 201, 709
FalI AAGNNNNNCTT 6 cut(s) 1136, 1168, 1647, 1679, 2043, 2075
FaqI GGGAC 2 cut(s) 85, 1266
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 1031
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 159
FokI GGATG 3 cut(s) 524, 1913, 1976
FriOI GRGCYC 1 cut(s) 1909
FseI GGCCGGCC 1 cut(s) 210
FspBI CTAG 9 cut(s) 461, 1194, 1211, 1494, 1542, 1844, 1877, 1961, 2086
FspI TGCGCA 1 cut(s) 1745
GlaI GCGC 4 cut(s) 6, 374, 376, 1745
GsuI CTGGAG 2 cut(s) 267, 1281
HaeIII GGCC 8 cut(s) 146, 167, 200, 206, 210, 395, 1087, 1200
HapII CCGG 6 cut(s) 143, 207, 547, 1181, 1407, 1597
HhaI GCGC 4 cut(s) 7, 375, 377, 1746
Hin6I GCGC 4 cut(s) 5, 373, 375, 1744
HinP1I GCGC 4 cut(s) 5, 373, 375, 1744
HincII GTYRAC 3 cut(s) 160, 1440, 1966
HindII GTYRAC 3 cut(s) 160, 1440, 1966
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 9 cut(s) 429, 808, 857, 1003, 1343, 1394, 1399, 1436, 1530
HpaII CCGG 6 cut(s) 143, 207, 547, 1181, 1407, 1597
HphI GGTGA 2 cut(s) 461, 1982
Hpy166II GTNNAC 4 cut(s) 160, 731, 1440, 1966
Hpy8I GTNNAC 4 cut(s) 160, 731, 1440, 1966
Hpy99I CGWCG 2 cut(s) 161, 164
HpyAV CCTTC 3 cut(s) 767, 1376, 1967
HpyCH4III ACNGT 5 cut(s) 403, 1292, 1697, 1732, 1970
HpyCH4IV ACGT 4 cut(s) 162, 727, 924, 1610
HpyF3I CTNAG 6 cut(s) 378, 591, 605, 1919, 1985, 2023
HpySE526I ACGT 4 cut(s) 162, 727, 924, 1610
HspAI GCGC 4 cut(s) 5, 373, 375, 1744
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
LmnI GCTCC 4 cut(s) 880, 1189, 1409, 1554
Lsp1109I GCAGC 6 cut(s) 149, 357, 509, 886, 1172, 1924
LweI GCATC 3 cut(s) 546, 1630, 1998
MaeI CTAG 9 cut(s) 461, 1194, 1211, 1494, 1542, 1844, 1877, 1961, 2086
MaeII ACGT 4 cut(s) 162, 727, 924, 1610
MaeIII GTNAC 9 cut(s) 317, 467, 482, 503, 558, 830, 961, 1169, 1606
MalI GATC 6 cut(s) 363, 741, 801, 930, 975, 1708
MbiI CCGCTC 1 cut(s) 11
MboI GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
MboII GAAGA 7 cut(s) 764, 809, 1484, 1640, 1868, 1873, 1956
MflI RGATCY 4 cut(s) 739, 799, 973, 1706
MhlI GDGCHC 2 cut(s) 125, 1909
MlsI TGGCCA 2 cut(s) 167, 200
MluNI TGGCCA 2 cut(s) 167, 200
MlyI GAGTC 3 cut(s) 851, 1445, 1539
MmeI TCCRAC 2 cut(s) 827, 858
Mox20I TGGCCA 2 cut(s) 167, 200
Mph1103I ATGCAT 1 cut(s) 1037
MroNI GCCGGC 1 cut(s) 206
MroXI GAANNNNTTC 4 cut(s) 522, 1398, 1563, 1809
MscI TGGCCA 2 cut(s) 167, 200
MseI TTAA 4 cut(s) 851, 1008, 1244, 1479
MslI CAYNNNNRTG 3 cut(s) 579, 687, 1034
Msp20I TGGCCA 2 cut(s) 167, 200
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 6 cut(s) 143, 207, 547, 1181, 1407, 1597
MspR9I CCNGG 6 cut(s) 143, 587, 1188, 1414, 1469, 1572
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 5 cut(s) 587, 1188, 1414, 1469, 1572
MvnI CGCG 3 cut(s) 7, 375, 1505
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 2 cut(s) 201, 709
NdeI CATATG 1 cut(s) 1031
NdeII GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
NgoMIV GCCGGC 1 cut(s) 206
NlaIV GGNNCC 3 cut(s) 1185, 1353, 1411
NmeAIII GCCGAG 1 cut(s) 1874
NmuCI GTSAC 6 cut(s) 317, 467, 482, 503, 961, 1606
NsbI TGCGCA 1 cut(s) 1745
NsiI ATGCAT 1 cut(s) 1037
NspI RCATGY 1 cut(s) 867
PagI TCATGA 1 cut(s) 1723
PauI GCGCGC 1 cut(s) 373
PceI AGGCCT 1 cut(s) 1200
PciI ACATGT 1 cut(s) 863
PctI GAATGC 1 cut(s) 869
PdiI GCCGGC 1 cut(s) 208
PdmI GAANNNNTTC 4 cut(s) 522, 1398, 1563, 1809
PfeI GAWTC 6 cut(s) 429, 808, 1003, 1343, 1394, 1399
PinAI ACCGGT 1 cut(s) 1596
PleI GAGTC 3 cut(s) 851, 1444, 1538
PmaCI CACGTG 1 cut(s) 1611
PmlI CACGTG 1 cut(s) 1611
PpsI GAGTC 3 cut(s) 851, 1444, 1538
Ppu21I YACGTR 1 cut(s) 1611
PscI ACATGT 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 1909
Psp6I CCWGG 5 cut(s) 585, 1186, 1412, 1467, 1570
PspCI CACGTG 1 cut(s) 1611
PspEI GGTNACC 1 cut(s) 467
PspGI CCWGG 5 cut(s) 585, 1186, 1412, 1467, 1570
PspN4I GGNNCC 3 cut(s) 1185, 1353, 1411
PspPI GGNCC 2 cut(s) 251, 1594
PstI CTGCAG 1 cut(s) 1162
PsuI RGATCY 4 cut(s) 739, 799, 973, 1706
PteI GCGCGC 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 1163
RigI GGCCGGCC 1 cut(s) 210
RseI CAYNNNNRTG 3 cut(s) 579, 687, 1034
SacI GAGCTC 1 cut(s) 1909
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 4 cut(s) 851, 1008, 1244, 1479
Sau3AI GATC 6 cut(s) 361, 739, 799, 928, 973, 1706
Sau96I GGNCC 2 cut(s) 251, 1594
ScaI AGTACT 2 cut(s) 1132, 1294
SchI GAGTC 3 cut(s) 851, 1445, 1539
ScrFI CCNGG 6 cut(s) 143, 587, 1188, 1414, 1469, 1572
SduI GDGCHC 2 cut(s) 125, 1909
SfaNI GCATC 3 cut(s) 546, 1630, 1998
SfcI CTRYAG 1 cut(s) 1158
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 2 cut(s) 251, 1594
SmiMI CAYNNNNRTG 3 cut(s) 579, 687, 1034
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 1200
SsiI CCGC 9 cut(s) 11, 103, 147, 150, 226, 327, 624, 1505, 2064
SspMI CTAG 9 cut(s) 461, 1194, 1211, 1494, 1542, 1844, 1877, 1961, 2086
SstI GAGCTC 1 cut(s) 1909
StuI AGGCCT 1 cut(s) 1200
StyD4I CCNGG 6 cut(s) 141, 585, 1186, 1412, 1467, 1570
StyI CCWWGG 2 cut(s) 201, 709
TaaI ACNGT 5 cut(s) 403, 1292, 1697, 1732, 1970
TaiI ACGT 4 cut(s) 165, 730, 927, 1613
TaqI TCGA 8 cut(s) 159, 419, 841, 1023, 1227, 1397, 1787, 1833
TatI WGTACW 6 cut(s) 171, 759, 846, 1130, 1292, 1544
TauI GCSGC 4 cut(s) 149, 152, 330, 1508
TfiI GAWTC 6 cut(s) 429, 808, 1003, 1343, 1394, 1399
Tru1I TTAA 4 cut(s) 851, 1008, 1244, 1479
Tru9I TTAA 4 cut(s) 851, 1008, 1244, 1479
TscAI CASTG 4 cut(s) 293, 406, 966, 2018
TseFI GTSAC 6 cut(s) 317, 467, 482, 503, 961, 1606
TseI GCWGC 6 cut(s) 137, 370, 497, 899, 1160, 1937
Tsp45I GTSAC 6 cut(s) 317, 467, 482, 503, 961, 1606
TspDTI ATGAA 7 cut(s) 85, 322, 1057, 1361, 1579, 1915, 2071
TspGWI ACGGA 3 cut(s) 81, 986, 1567
TspRI CASTG 4 cut(s) 293, 406, 966, 2018
VpaK11BI GGWCC 2 cut(s) 251, 1594
XapI RAATTY 5 cut(s) 663, 837, 933, 1483, 1615
XbaI TCTAGA 2 cut(s) 1193, 1876
XceI RCATGY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 4 cut(s) 522, 1398, 1563, 1809
XspI CTAG 9 cut(s) 461, 1194, 1211, 1494, 1542, 1844, 1877, 1961, 2086
ZrmI AGTACT 2 cut(s) 1132, 1294
Zsp2I ATGCAT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.