PP-loop family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24560 AT3G24560 AT3G24560 |
| fragaria_vesca | FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 |
| malus_domestica | MD15G1183800.v1.1 |
| prunus_persica | Prupe.7G232400_v2.0.a1 |
| pyrus_communis | pycom15g16540 |
| rosa_chinensis | RchiOBHm_Chr2g0090271 |
| rosa_laevigata | RLG00000016093 |
| rosa_multiflora | Rmu_sc0000436.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00151330 |
| rosa_rugosa | Rorug02G0006000 Rorug02G0006100 |
| rosa_samantha | Rh2AG052000 Rh2BG050600 Rh2CG052800 Rh2DG051900 |
| rosa_wichuraiana | Rw2G004490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1310 |
| Acc36I | ACCTGC | 1 cut(s) | 1310 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1184, 1997 |
| AccI | GTMKAC | 3 cut(s) | 153, 354, 1819 |
| AccII | CGCG | 2 cut(s) | 7, 496 |
| AciI | CCGC | 3 cut(s) | 276, 1741, 2061 |
| AclWI | GGATC | 2 cut(s) | 741, 978 |
| AcoI | YGGCCR | 3 cut(s) | 159, 192, 452 |
| AcsI | RAATTY | 3 cut(s) | 657, 831, 1480 |
| AcuI | CTGAAG | 4 cut(s) | 708, 1278, 1782, 1937 |
| AfaI | GTAC | 7 cut(s) | 37, 167, 755, 1099, 1291, 1546, 2052 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 282, 473, 1091, 1184, 1997, 2060 |
| AgeI | ACCGGT | 1 cut(s) | 1596 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1516 |
| AjiI | CACGTC | 1 cut(s) | 651 |
| AjnI | CCWGG | 5 cut(s) | 579, 729, 1183, 1409, 1570 |
| AluBI | AGCT | 9 cut(s) | 176, 290, 880, 1160, 1181, 1205, 1508, 1658, 1904 |
| AluI | AGCT | 9 cut(s) | 176, 290, 880, 1160, 1181, 1205, 1508, 1658, 1904 |
| Alw21I | GWGCWC | 1 cut(s) | 1906 |
| Alw26I | GTCTC | 5 cut(s) | 241, 288, 415, 657, 846 |
| AlwI | GGATC | 2 cut(s) | 741, 978 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 962, 1160, 1184 |
| Ama87I | CYCGRG | 1 cut(s) | 291 |
| AoxI | GGCC | 6 cut(s) | 159, 192, 202, 452, 1082, 1945 |
| ApeKI | GCWGC | 6 cut(s) | 364, 491, 1157, 1164, 1505, 1934 |
| ApoI | RAATTY | 3 cut(s) | 657, 831, 1480 |
| AsiGI | ACCGGT | 1 cut(s) | 1596 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 516, 1395, 1473, 1563, 1598, 1806 |
| AspLEI | GCGC | 2 cut(s) | 7, 496 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 1 cut(s) | 1559 |
| AsuII | TTCGAA | 2 cut(s) | 835, 1676 |
| AvaI | CYCGRG | 1 cut(s) | 291 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 691, 724 |
| BalI | TGGCCA | 2 cut(s) | 161, 194 |
| BanII | GRGCYC | 1 cut(s) | 1906 |
| BbsI | GAAGAC | 2 cut(s) | 798, 1865 |
| Bbv12I | GWGCWC | 1 cut(s) | 1906 |
| BbvI | GCAGC | 6 cut(s) | 351, 503, 1151, 1169, 1517, 1921 |
| BccI | CCATC | 5 cut(s) | 31, 452, 1266, 1661, 1723 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 904, 938 |
| BciT130I | CCWGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| BciVI | GTATCC | 2 cut(s) | 719, 1921 |
| BcoDI | GTCTC | 5 cut(s) | 241, 288, 415, 657, 846 |
| BfaI | CTAG | 5 cut(s) | 183, 1191, 1208, 1958, 2083 |
| BfuAI | ACCTGC | 1 cut(s) | 1310 |
| BfuI | GTATCC | 2 cut(s) | 719, 1921 |
| BglII | AGATCT | 1 cut(s) | 1703 |
| BisI | GCNGC | 6 cut(s) | 365, 492, 1158, 1165, 1506, 1935 |
| BlpI | GCTNAGC | 1 cut(s) | 1982 |
| BlsI | GCNGC | 6 cut(s) | 366, 493, 1159, 1166, 1507, 1936 |
| BmcAI | AGTACT | 1 cut(s) | 1099 |
| Bme1390I | CCNGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1516 |
| BmeT110I | CYCGRG | 1 cut(s) | 291 |
| BmgBI | CACGTC | 1 cut(s) | 651 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| BmiI | GGNNCC | 1 cut(s) | 1408 |
| BmrFI | CCNGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| BmrI | ACTGGG | 1 cut(s) | 134 |
| BmsI | GCATC | 4 cut(s) | 292, 540, 1345, 1995 |
| BmuI | ACTGGG | 1 cut(s) | 134 |
| BpiI | GAAGAC | 2 cut(s) | 798, 1865 |
| BpmI | CTGGAG | 3 cut(s) | 261, 1161, 1425 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1982 |
| Bpu14I | TTCGAA | 2 cut(s) | 835, 1676 |
| BpuEI | CTTGAG | 1 cut(s) | 191 |
| Bsa29I | ATCGAT | 1 cut(s) | 924 |
| BsaBI | GATNNNNATC | 2 cut(s) | 462, 530 |
| BsaI | GGTCTC | 2 cut(s) | 241, 415 |
| BsaJI | CCNNGG | 7 cut(s) | 195, 358, 625, 1050, 1184, 1570, 1571 |
| BsaWI | WCCGGW | 2 cut(s) | 540, 1596 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 282, 473, 1091, 1184, 1997, 2060 |
| Bse118I | RCCGGY | 1 cut(s) | 1596 |
| Bse1I | ACTGG | 4 cut(s) | 33, 140, 287, 1408 |
| Bse8I | GATNNNNATC | 2 cut(s) | 462, 530 |
| BseBI | CCWGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| BseCI | ATCGAT | 1 cut(s) | 924 |
| BseDI | CCNNGG | 7 cut(s) | 195, 358, 625, 1050, 1184, 1570, 1571 |
| BseGI | GGATG | 5 cut(s) | 463, 463, 531, 1253, 1986 |
| BseJI | GATNNNNATC | 2 cut(s) | 462, 530 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 282, 473, 1091, 1184, 1997, 2060 |
| BseMII | CTCAG | 5 cut(s) | 576, 613, 1610, 1641, 1905 |
| BseNI | ACTGG | 4 cut(s) | 33, 140, 287, 1408 |
| BseRI | GAGGAG | 1 cut(s) | 1801 |
| BseXI | GCAGC | 6 cut(s) | 351, 503, 1151, 1169, 1517, 1921 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 496 |
| BshFI | GGCC | 6 cut(s) | 161, 194, 204, 454, 1084, 1947 |
| BshTI | ACCGGT | 1 cut(s) | 1596 |
| BshVI | ATCGAT | 1 cut(s) | 924 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1906 |
| BsiHKCI | CYCGRG | 1 cut(s) | 291 |
| BsiSI | CCGG | 3 cut(s) | 455, 541, 1597 |
| BslFI | GGGAC | 3 cut(s) | 85, 863, 1695 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 282, 473, 1091, 1184, 1997, 2060 |
| BsmAI | GTCTC | 5 cut(s) | 241, 288, 415, 657, 846 |
| BsmBI | CGTCTC | 1 cut(s) | 657 |
| BsmFI | GGGAC | 3 cut(s) | 85, 863, 1695 |
| BsmI | GAATGC | 1 cut(s) | 866 |
| BsnI | GGCC | 6 cut(s) | 161, 194, 204, 454, 1084, 1947 |
| Bso31I | GGTCTC | 2 cut(s) | 241, 415 |
| BsoBI | CYCGRG | 1 cut(s) | 291 |
| Bsp119I | TTCGAA | 2 cut(s) | 835, 1676 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1906 |
| Bsp143I | GATC | 3 cut(s) | 733, 970, 1703 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1982 |
| Bsp19I | CCATGG | 2 cut(s) | 195, 358 |
| BspACI | CCGC | 3 cut(s) | 276, 1741, 2061 |
| BspANI | GGCC | 6 cut(s) | 161, 194, 204, 454, 1084, 1947 |
| BspCNI | CTCAG | 5 cut(s) | 577, 612, 1611, 1642, 1904 |
| BspDI | ATCGAT | 1 cut(s) | 924 |
| BspFNI | CGCG | 2 cut(s) | 7, 496 |
| BspHI | TCATGA | 2 cut(s) | 1590, 1720 |
| BspLI | GGNNCC | 1 cut(s) | 1408 |
| BspMI | ACCTGC | 1 cut(s) | 1310 |
| BspPI | GGATC | 2 cut(s) | 741, 978 |
| BspT104I | TTCGAA | 2 cut(s) | 835, 1676 |
| BspTNI | GGTCTC | 2 cut(s) | 241, 415 |
| BsrFI | RCCGGY | 1 cut(s) | 1596 |
| BsrI | ACTGG | 4 cut(s) | 33, 140, 287, 1408 |
| BssAI | RCCGGY | 1 cut(s) | 1596 |
| BssECI | CCNNGG | 7 cut(s) | 195, 358, 625, 1050, 1184, 1570, 1571 |
| BssMI | GATC | 3 cut(s) | 733, 970, 1703 |
| BssT1I | CCWWGG | 4 cut(s) | 195, 358, 625, 1050 |
| Bst2UI | CCWGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| Bst4CI | ACNGT | 5 cut(s) | 254, 397, 707, 964, 1289 |
| Bst6I | CTCTTC | 3 cut(s) | 1464, 1848, 1936 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 569 |
| BstBI | TTCGAA | 2 cut(s) | 835, 1676 |
| BstC8I | GCNNGC | 4 cut(s) | 202, 369, 1162, 1949 |
| BstDEI | CTNAG | 9 cut(s) | 585, 599, 845, 1427, 1491, 1619, 1650, 1891, 1982 |
| BstDSI | CCRYGG | 2 cut(s) | 195, 358 |
| BstF5I | GGATG | 5 cut(s) | 463, 463, 531, 1253, 1986 |
| BstFNI | CGCG | 2 cut(s) | 7, 496 |
| BstHHI | GCGC | 2 cut(s) | 7, 496 |
| BstKTI | GATC | 3 cut(s) | 736, 973, 1706 |
| BstMAI | GTCTC | 5 cut(s) | 241, 288, 415, 657, 846 |
| BstMBI | GATC | 3 cut(s) | 733, 970, 1703 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 569, 912, 1901, 1992 |
| BstNI | CCWGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| BstNSI | RCATGY | 1 cut(s) | 1126 |
| BstSCI | CCNGG | 5 cut(s) | 579, 729, 1183, 1409, 1570 |
| BstUI | CGCG | 2 cut(s) | 7, 496 |
| BstV1I | GCAGC | 6 cut(s) | 351, 503, 1151, 1169, 1517, 1921 |
| BstV2I | GAAGAC | 2 cut(s) | 798, 1865 |
| BstX2I | RGATCY | 3 cut(s) | 733, 970, 1703 |
| BstYI | RGATCY | 3 cut(s) | 733, 970, 1703 |
| Bsu15I | ATCGAT | 1 cut(s) | 924 |
| BsuI | GTATCC | 2 cut(s) | 719, 1921 |
| BsuRI | GGCC | 6 cut(s) | 161, 194, 204, 454, 1084, 1947 |
| BsuTUI | ATCGAT | 1 cut(s) | 924 |
| BtgI | CCRYGG | 2 cut(s) | 195, 358 |
| BtgZI | GCGATG | 1 cut(s) | 9 |
| BtrI | CACGTC | 1 cut(s) | 651 |
| BtsCI | GGATG | 5 cut(s) | 463, 463, 531, 1253, 1986 |
| BtsI | GCAGTG | 3 cut(s) | 625, 963, 2008 |
| BtsIMutI | CAGTG | 5 cut(s) | 280, 393, 625, 963, 2008 |
| BveI | ACCTGC | 1 cut(s) | 1310 |
| Cac8I | GCNNGC | 4 cut(s) | 202, 369, 1162, 1949 |
| CaiI | CAGNNNCTG | 3 cut(s) | 962, 1160, 1184 |
| CciI | TCATGA | 2 cut(s) | 1590, 1720 |
| CfoI | GCGC | 2 cut(s) | 7, 496 |
| Cfr10I | RCCGGY | 1 cut(s) | 1596 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| ClaI | ATCGAT | 1 cut(s) | 924 |
| CseI | GACGC | 1 cut(s) | 1347 |
| Csp6I | GTAC | 7 cut(s) | 36, 166, 754, 1098, 1290, 1545, 2051 |
| CspAI | ACCGGT | 1 cut(s) | 1596 |
| CviQI | GTAC | 7 cut(s) | 36, 166, 754, 1098, 1290, 1545, 2051 |
| DdeI | CTNAG | 9 cut(s) | 585, 599, 845, 1427, 1491, 1619, 1650, 1891, 1982 |
| DpnI | GATC | 3 cut(s) | 735, 972, 1705 |
| DpnII | GATC | 3 cut(s) | 733, 970, 1703 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1516 |
| EaeI | YGGCCR | 3 cut(s) | 159, 192, 452 |
| Eam1104I | CTCTTC | 3 cut(s) | 1464, 1848, 1936 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1516 |
| EarI | CTCTTC | 3 cut(s) | 1464, 1848, 1936 |
| EciI | GGCGGA | 1 cut(s) | 2076 |
| Ecl136II | GAGCTC | 1 cut(s) | 1904 |
| Eco130I | CCWWGG | 4 cut(s) | 195, 358, 625, 1050 |
| Eco147I | AGGCCT | 1 cut(s) | 1947 |
| Eco24I | GRGCYC | 1 cut(s) | 1906 |
| Eco31I | GGTCTC | 2 cut(s) | 241, 415 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco53kI | GAGCTC | 1 cut(s) | 1904 |
| Eco57I | CTGAAG | 4 cut(s) | 708, 1278, 1782, 1937 |
| Eco88I | CYCGRG | 1 cut(s) | 291 |
| EcoICRI | GAGCTC | 1 cut(s) | 1904 |
| EcoRI | GAATTC | 1 cut(s) | 831 |
| EcoRII | CCWGG | 5 cut(s) | 579, 729, 1183, 1409, 1570 |
| EcoT14I | CCWWGG | 4 cut(s) | 195, 358, 625, 1050 |
| EcoT22I | ATGCAT | 1 cut(s) | 1128 |
| EcoT38I | GRGCYC | 1 cut(s) | 1906 |
| ErhI | CCWWGG | 4 cut(s) | 195, 358, 625, 1050 |
| Esp3I | CGTCTC | 1 cut(s) | 657 |
| FaqI | GGGAC | 3 cut(s) | 85, 863, 1695 |
| FauNDI | CATATG | 2 cut(s) | 1028, 1333 |
| FblI | GTMKAC | 3 cut(s) | 153, 354, 1819 |
| Fnu4HI | GCNGC | 6 cut(s) | 365, 492, 1158, 1165, 1506, 1935 |
| FokI | GGATG | 5 cut(s) | 450, 470, 518, 1240, 1973 |
| FriOI | GRGCYC | 1 cut(s) | 1906 |
| Fsp4HI | GCNGC | 6 cut(s) | 365, 492, 1158, 1165, 1506, 1935 |
| FspBI | CTAG | 5 cut(s) | 183, 1191, 1208, 1958, 2083 |
| GlaI | GCGC | 2 cut(s) | 6, 495 |
| GluI | GCNGC | 6 cut(s) | 365, 492, 1158, 1165, 1506, 1935 |
| GsuI | CTGGAG | 3 cut(s) | 261, 1161, 1425 |
| HaeIII | GGCC | 6 cut(s) | 161, 194, 204, 454, 1084, 1947 |
| HapII | CCGG | 3 cut(s) | 455, 541, 1597 |
| HgaI | GACGC | 1 cut(s) | 1347 |
| HhaI | GCGC | 2 cut(s) | 7, 496 |
| Hin6I | GCGC | 2 cut(s) | 5, 494 |
| HinP1I | GCGC | 2 cut(s) | 5, 494 |
| HincII | GTYRAC | 3 cut(s) | 154, 355, 1437 |
| HindII | GTYRAC | 3 cut(s) | 154, 355, 1437 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HpaII | CCGG | 3 cut(s) | 455, 541, 1597 |
| HphI | GGTGA | 1 cut(s) | 1559 |
| Hpy166II | GTNNAC | 6 cut(s) | 129, 154, 355, 1437, 1559, 1820 |
| Hpy8I | GTNNAC | 6 cut(s) | 129, 154, 355, 1437, 1559, 1820 |
| Hpy99I | CGWCG | 1 cut(s) | 149 |
| HpyAV | CCTTC | 5 cut(s) | 761, 1248, 1373, 1459, 1672 |
| HpyCH4III | ACNGT | 5 cut(s) | 254, 397, 707, 964, 1289 |
| HpyCH4IV | ACGT | 1 cut(s) | 650 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 569, 912, 1901, 1992 |
| HpyF3I | CTNAG | 9 cut(s) | 585, 599, 845, 1427, 1491, 1619, 1650, 1891, 1982 |
| HpySE526I | ACGT | 1 cut(s) | 650 |
| HspAI | GCGC | 2 cut(s) | 5, 494 |
| Kzo9I | GATC | 3 cut(s) | 733, 970, 1703 |
| LmnI | GCTCC | 3 cut(s) | 877, 1186, 1406 |
| Lsp1109I | GCAGC | 6 cut(s) | 351, 503, 1151, 1169, 1517, 1921 |
| LweI | GCATC | 4 cut(s) | 292, 540, 1345, 1995 |
| MaeI | CTAG | 5 cut(s) | 183, 1191, 1208, 1958, 2083 |
| MaeII | ACGT | 1 cut(s) | 650 |
| MaeIII | GTNAC | 6 cut(s) | 476, 497, 552, 958, 1606, 1630 |
| MalI | GATC | 3 cut(s) | 735, 972, 1705 |
| MboI | GATC | 3 cut(s) | 733, 970, 1703 |
| MboII | GAAGA | 9 cut(s) | 395, 535, 758, 803, 1209, 1481, 1865, 1870, 1953 |
| MflI | RGATCY | 3 cut(s) | 733, 970, 1703 |
| MhlI | GDGCHC | 1 cut(s) | 1906 |
| MlsI | TGGCCA | 2 cut(s) | 161, 194 |
| MluCI | AATT | 9 cut(s) | 348, 416, 657, 831, 1086, 1106, 1311, 1347, 1480 |
| MluNI | TGGCCA | 2 cut(s) | 161, 194 |
| MlyI | GAGTC | 4 cut(s) | 231, 1442, 1539, 1798 |
| MmeI | TCCRAC | 1 cut(s) | 855 |
| Mox20I | TGGCCA | 2 cut(s) | 161, 194 |
| Mph1103I | ATGCAT | 1 cut(s) | 1128 |
| MroXI | GAANNNNTTC | 6 cut(s) | 516, 1395, 1473, 1563, 1598, 1806 |
| MscI | TGGCCA | 2 cut(s) | 161, 194 |
| MseI | TTAA | 3 cut(s) | 1005, 1346, 2021 |
| MslI | CAYNNNNRTG | 2 cut(s) | 573, 681 |
| Msp20I | TGGCCA | 2 cut(s) | 161, 194 |
| MspA1I | CMGCKG | 2 cut(s) | 1160, 1508 |
| MspI | CCGG | 3 cut(s) | 455, 541, 1597 |
| MspR9I | CCNGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| Mva1269I | GAATGC | 1 cut(s) | 866 |
| MvaI | CCWGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| MvnI | CGCG | 2 cut(s) | 7, 496 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 569, 912, 1901, 1992 |
| NcoI | CCATGG | 2 cut(s) | 195, 358 |
| NdeI | CATATG | 2 cut(s) | 1028, 1333 |
| NdeII | GATC | 3 cut(s) | 733, 970, 1703 |
| NlaIV | GGNNCC | 1 cut(s) | 1408 |
| NmeAIII | GCCGAG | 1 cut(s) | 2037 |
| NmuCI | GTSAC | 4 cut(s) | 476, 497, 958, 1606 |
| NsiI | ATGCAT | 1 cut(s) | 1128 |
| NspI | RCATGY | 1 cut(s) | 1126 |
| NspV | TTCGAA | 2 cut(s) | 835, 1676 |
| PaeR7I | CTCGAG | 1 cut(s) | 291 |
| PagI | TCATGA | 2 cut(s) | 1590, 1720 |
| PaqCI | CACCTGC | 1 cut(s) | 1310 |
| PasI | CCCWGGG | 1 cut(s) | 1571 |
| PceI | AGGCCT | 1 cut(s) | 1947 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 150 |
| PctI | GAATGC | 1 cut(s) | 866 |
| PdmI | GAANNNNTTC | 6 cut(s) | 516, 1395, 1473, 1563, 1598, 1806 |
| PfeI | GAWTC | 9 cut(s) | 423, 802, 1000, 1010, 1250, 1340, 1391, 1414, 1474 |
| PflFI | GACNNNGTC | 1 cut(s) | 1686 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1184, 1997 |
| PfoI | TCCNGGA | 1 cut(s) | 729 |
| PinAI | ACCGGT | 1 cut(s) | 1596 |
| PkrI | GCNGC | 6 cut(s) | 366, 493, 1159, 1166, 1507, 1936 |
| PleI | GAGTC | 4 cut(s) | 230, 1441, 1538, 1797 |
| PpsI | GAGTC | 4 cut(s) | 230, 1441, 1538, 1797 |
| Psp124BI | GAGCTC | 1 cut(s) | 1906 |
| Psp6I | CCWGG | 5 cut(s) | 579, 729, 1183, 1409, 1570 |
| PspGI | CCWGG | 5 cut(s) | 579, 729, 1183, 1409, 1570 |
| PspN4I | GGNNCC | 1 cut(s) | 1408 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| PstNI | CAGNNNCTG | 3 cut(s) | 962, 1160, 1184 |
| PsuI | RGATCY | 3 cut(s) | 733, 970, 1703 |
| PsyI | GACNNNGTC | 1 cut(s) | 1686 |
| PvuII | CAGCTG | 2 cut(s) | 1160, 1508 |
| RsaI | GTAC | 7 cut(s) | 37, 167, 755, 1099, 1291, 1546, 2052 |
| RsaNI | GTAC | 7 cut(s) | 36, 166, 754, 1098, 1290, 1545, 2051 |
| RseI | CAYNNNNRTG | 2 cut(s) | 573, 681 |
| SacI | GAGCTC | 1 cut(s) | 1906 |
| SalI | GTCGAC | 2 cut(s) | 152, 353 |
| SaqAI | TTAA | 3 cut(s) | 1005, 1346, 2021 |
| SatI | GCNGC | 6 cut(s) | 365, 492, 1158, 1165, 1506, 1935 |
| Sau3AI | GATC | 3 cut(s) | 733, 970, 1703 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScaI | AGTACT | 1 cut(s) | 1099 |
| SchI | GAGTC | 4 cut(s) | 231, 1442, 1539, 1798 |
| ScrFI | CCNGG | 5 cut(s) | 581, 731, 1185, 1411, 1572 |
| SduI | GDGCHC | 1 cut(s) | 1906 |
| SfaNI | GCATC | 4 cut(s) | 292, 540, 1345, 1995 |
| Sfr274I | CTCGAG | 1 cut(s) | 291 |
| SfuI | TTCGAA | 2 cut(s) | 835, 1676 |
| SinI | GGWCC | 1 cut(s) | 245 |
| SlaI | CTCGAG | 1 cut(s) | 291 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 573, 681 |
| SmlI | CTYRAG | 2 cut(s) | 206, 291 |
| SmoI | CTYRAG | 2 cut(s) | 206, 291 |
| Sse9I | AATT | 9 cut(s) | 348, 416, 657, 831, 1086, 1106, 1311, 1347, 1480 |
| SseBI | AGGCCT | 1 cut(s) | 1947 |
| SsiI | CCGC | 3 cut(s) | 276, 1741, 2061 |
| SspI | AATATT | 2 cut(s) | 516, 1450 |
| SspMI | CTAG | 5 cut(s) | 183, 1191, 1208, 1958, 2083 |
| SstI | GAGCTC | 1 cut(s) | 1906 |
| StuI | AGGCCT | 1 cut(s) | 1947 |
| StyD4I | CCNGG | 5 cut(s) | 579, 729, 1183, 1409, 1570 |
| StyI | CCWWGG | 4 cut(s) | 195, 358, 625, 1050 |
| TaaI | ACNGT | 5 cut(s) | 254, 397, 707, 964, 1289 |
| TaiI | ACGT | 1 cut(s) | 653 |
| TasI | AATT | 9 cut(s) | 348, 416, 657, 831, 1086, 1106, 1311, 1347, 1480 |
| TatI | WGTACW | 4 cut(s) | 165, 1097, 1289, 1544 |
| TfiI | GAWTC | 9 cut(s) | 423, 802, 1000, 1010, 1250, 1340, 1391, 1414, 1474 |
| Tru1I | TTAA | 3 cut(s) | 1005, 1346, 2021 |
| Tru9I | TTAA | 3 cut(s) | 1005, 1346, 2021 |
| TscAI | CASTG | 5 cut(s) | 287, 400, 625, 963, 2015 |
| TseFI | GTSAC | 4 cut(s) | 476, 497, 958, 1606 |
| TseI | GCWGC | 6 cut(s) | 364, 491, 1157, 1164, 1505, 1934 |
| Tsp45I | GTSAC | 4 cut(s) | 476, 497, 958, 1606 |
| TspDTI | ATGAA | 9 cut(s) | 85, 316, 525, 1023, 1054, 1214, 1579, 1607, 2068 |
| TspRI | CASTG | 5 cut(s) | 287, 400, 625, 963, 2015 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1686 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1184, 1997 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| XapI | RAATTY | 3 cut(s) | 657, 831, 1480 |
| XbaI | TCTAGA | 2 cut(s) | 182, 1190 |
| XceI | RCATGY | 1 cut(s) | 1126 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 542 |
| XhoI | CTCGAG | 1 cut(s) | 291 |
| XmiI | GTMKAC | 3 cut(s) | 153, 354, 1819 |
| XmnI | GAANNNNTTC | 6 cut(s) | 516, 1395, 1473, 1563, 1598, 1806 |
| XspI | CTAG | 5 cut(s) | 183, 1191, 1208, 1958, 2083 |
| ZrmI | AGTACT | 1 cut(s) | 1099 |
| Zsp2I | ATGCAT | 1 cut(s) | 1128 |