Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008644

Physical Location & Seq

Genomic Coordinates Reverse (-)

584216 .. 596040

Gene Structure 11825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0006100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

ATGGCTTCCACAGCAGCCTCCTCATTCTCTCCAACCCCTCCTCATGCTCAGAGTCAGGGCTGGAGAAGACCTCCCAAACTCCATAACCACCACAAGTCCCTCAAAAACCTTCACTTTCTCTTCAGCTCAACCTCCAACTCCAACACCCTCTTCTTCAAGCCCTCACTCTCTTCCTCCACTCATTTCCCTCTCAGCCTCAAACCCACTCCAGACCCAGTTCAGTTCCACCAGCTAAACGACTCCGTCCAAGACAATCTCGTCGAAAACCTCGAGAATTCCATGAAATTCCAGGTACCCATCACCGAATTTCACCTAACTAGGTCTCCAGAATCGTCCCCAAGAATCTTCATCCAAGACCCACCATGGATTGCGTCCCTCTTTTTGAAGGGTATGTTCAAGAAAGCCAATAAAGAACTGAAACTGGAGTCCAAGGAAATCGATAGGAGGAAGTACAATCTGCTGAGGAGGAGGCAGATTAAGGCGGAGACGGAGGCGTGGGAGAAGATGGTGGATGAGTATAAGGACTTGGAGAGAGTAATGCGTGAGAAGAAGCTGGCTCCGAGCCTGCCTTATGTAAAGGCCTTGTTTTTGGGGTGGTTTGAGCCACTGAGGGAGGCCATTGCTAAGGAGCAGAAGGCACAGCAAACCAAGAAGCACAAGGCTGCGTTTGCGCCGCACATTGATTTGTTGCCCGCGGATAAGATGGCCCTGATTGTAATGCATAAGCTGATGGGGTTGGTGATGATGGGGAATCAAGATGGGTGTGTTCAGGTGGTTCAGGCTGCCGTGCACATTGGTATGGCCATAGAGCAGGAGGTTCGGATTCACAGTTTCTTGGAGAAGACTAAAAGTCTCCAGAGAAAGAAGACTGCGGCTGCGGATGAAGATGGTCTGAGCAAGGAGAAGGAGATACTGAGGAAACGTGTTAATGGTTTGATTAGAAGGAAAAGACTGGTTGAGGTGCAAAAGCTACTGAAAAAAGAAGATATGAAGCCCTGGGGTCGGGATACACAGGCTAAGCTGGGAAGTCGGCTGATAGAACTATTAACAGAAACAGCTCATGTACAACCTCCGCTTGACCAATTGGCAGATGGTCCACCTGATGTTAGACCTGCATTTAGGCACAGACTAAAGGCTGCGGCAAAAAGTCCAGGGCAGAAACTTGTAAAGAACTATGGAGTTATTGAATGTGATCCCCTAGTTCTTACCGGACTTGATAAAACTGCTAAACATATGTTGATTCCTTATGTGCCAATGTTGGTGCCTCCCAAAAGATGGAAAGGGTATGACAAGGGTGGGCACTTGTTCCTACCTTCTTATGTCATGCGTACCCATGGATCTAGGAAGCAGGTAGATACAATGAGAAATATTCCTGGAAGACAGATGCAGAAAGTATTTGAGGCCCTCGATATGCTTGGAAGCACCAAATGGCGGATTAATAAAAAGGTTCTTAACGTGGTGGAGAGCATCTGGGCTAGAGGTGGCAACATTGCAGGCCTGGTTGATCGTGAAGATGTTCCTGTACCAGAGAAACCACCATCTGAGGATTTAACAGAAATTCAGGAATGGAGATGGAGTGCAAGAAAAGCAAAGAAGCTTAACCAAGAGAGGCATTCTCAACGATGTGACACTGAACTTAAGCTCTCTGTCGCGCGCAGAATGAAAGACGAGGAAGGCTTTTATTATCCCCACAATCTTGATTTCCGAGGCCGAGCATACCCAATGCATCCCCATTTGAATCATTTGAGTTCTGATCTATGTCGAGGAGTCCTTGAATTTGCTGAAGGGCGGCCATTGGGGAAGTCCGGATTGCGATGGCTGAAGATTCATTTAGCAAACTTGTATTCAGGTGGTGTTGAAAAGCTTTCATACGATGGGCGTATAGCATTCGTGGATAACCACATTGATGATATATTTGATTCAGCAACAAACCCTGTTAATGGAAATCGTTGGTGGTTAACTGCTGAAGATCCTTTACAGTGCCTAGCTGCTTGTATCAATCTATCAGAAGCCTTAAATAGCCCATCACCACATACTGTCATTTCTCATTTACCCATCCATCAGGATGGTTCGTGCAATGGCTTACAGCACTATGCAGCCTTGGGGAGAGATACTTTGGAAGCAGCTGCAGTCAACTTAGTTGCTGGAGAGAAACCTGCTGATGTGTATTCAGAAATAGCTGTGAGGGTACATGACATTATGAAGAGAGACAGCGATAAGGACCCAACTACCAGCCCAAATGCTTTATTGGCTAGAGTCTTAGTCGATCAGATTGATCGGAAATTGGTGAAACAGACTGTGATGACTTCAGTATATGGTGTTACTTACGTTGGGGCGCGTGAACAGATAAAAAGAAGATTAGAGGAGAAGGGTCTTATAACTGATGATAGACTATTGTTCACCGCAGCTTGTTATGCTGCTAAAGTGACACTGGCTGCCCTTGGAGAGATTTTCCAAGCTGCACGTGGCATAATGAGCTGGCTTGGTGATTGTGCCAAGGTAATTGCTTCAGAAAATCAGCCTGTTCGTTGGACGACTCCTCTAGGTCTTCCTGTTGTGCAACCATACTGTAAAAGTGAACGACATCTTATAAGAACATCCCTTCAGGTTCTGGCCTTGCAGCGGGAGAGTAACTTGGTAGATGTAAGGAAACAGAGAACGGCATTTCCTCCAAATTTTGTACACTCACTTGATGGTTCACACATGATGATGACAGCTCTTGCCTGCAGGGATGCTGGCATACGCTTTGCAGGGGTGCATGACTCCTTCTGGACTCATGCATGTGACGTGGATCTAATGAACCAGATACTAAGGGAAAACTTTGTGGAGCTCTATAGCAAGCCGATACTTGAGAATTTGCTTAAAAGCTTTCAAGCAGCGTATCCAGAATTGTCGTTTCCTCCCCTCCCAGAAAGAGGTGACTTTGACTTGCAAGAGGTTCTAAAATCTCCATACTTTTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_3

Protein Analysis

988

Amino Acids

112.11

Weight (kDa)

9.35

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	157 - 474	6.4e-75	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	597 - 962	1.4e-156	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24560 AT3G24560 AT3G24560
fragaria_vesca	FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 FvH4_1g04570 FvH4_1g04570
malus_domestica	MD15G1183800.v1.1
prunus_persica	Prupe.7G232400_v2.0.a1
pyrus_communis	pycom15g16540
rosa_chinensis	RchiOBHm_Chr2g0090271
rosa_laevigata	RLG00000016093
rosa_multiflora	Rmu_sc0000436.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151330
rosa_rugosa	Rorug02G0006000 Rorug02G0006100
rosa_samantha	Rh2AG052000 Rh2BG050600 Rh2CG052800 Rh2DG051900
rosa_wichuraiana	Rw2G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2378, 2591
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc36I	ACCTGC	3 cut(s)	1120, 1339, 2164
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	292, 1261
AccB7I	CCANNNNNTGG	1 cut(s)	1275
AccII	CGCG	4 cut(s)	695, 1652, 1654, 2338
AccIII	TCCGGA	1 cut(s)	1805
AclWI	GGATC	4 cut(s)	1187, 1345, 1964, 2799
AcoI	YGGCCR	2 cut(s)	801, 1790
AcsI	RAATTY	7 cut(s)	274, 284, 305, 1557, 1775, 2674, 2854
AcuI	CTGAAG	7 cut(s)	106, 1803, 1841, 1986, 2292, 2493, 2588
AcvI	CACGTG	1 cut(s)	2465
AfaI	GTAC	7 cut(s)	294, 452, 1065, 1330, 1524, 2190, 2682
AfiI	CCNNNNNNNGG	6 cut(s)	1002, 1275, 1431, 1940, 2622, 2915
AflII	CTTAAG	1 cut(s)	1637
AflIII	ACRYGT	1 cut(s)	922
AgsI	TTSAA	9 cut(s)	157, 385, 397, 1187, 1738, 1775, 1859, 2873, 2962
AhdI	GACNNNNNGTC	1 cut(s)	849
AjiI	CACGTC	1 cut(s)	2788
AjnI	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AloI	GAACNNNNNNTCC	2 cut(s)	2650, 2682
Alw21I	GWGCWC	2 cut(s)	792, 2832
Alw26I	GTCTC	4 cut(s)	327, 479, 857, 2202
Alw44I	GTGCAC	1 cut(s)	788
AlwI	GGATC	4 cut(s)	1187, 1345, 1964, 2799
AlwNI	CAGNNNCTG	1 cut(s)	2611
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	1805
AoxI	GGCC	9 cut(s)	579, 615, 705, 801, 1401, 1495, 1708, 1790, 2613
ApaLI	GTGCAC	1 cut(s)	788
ApoI	RAATTY	7 cut(s)	274, 284, 305, 1557, 1775, 2674, 2854
AseI	ATTAAT	1 cut(s)	1437
Asp700I	GAANNNNTTC	1 cut(s)	1515
Asp718I	GGTACC	1 cut(s)	292
AspLEI	GCGC	4 cut(s)	673, 1654, 1656, 2338
AspS9I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
AsuHPI	GGTGA	8 cut(s)	292, 302, 751, 2019, 2299, 2392, 2498, 2930
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	1094, 2221
BaeGI	GKGCMC	2 cut(s)	792, 1302
BalI	TGGCCA	1 cut(s)	803
BanI	GGYRCC	2 cut(s)	292, 1261
BanII	GRGCYC	1 cut(s)	2832
BarI	GAAGNNNNNNTAC	2 cut(s)	1959, 1991
BbrPI	CACGTG	1 cut(s)	2465
BbsI	GAAGAC	5 cut(s)	73, 848, 872, 1384, 2540
Bbv12I	GWGCWC	2 cut(s)	792, 2832
BbvCI	CCTCAGC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	770, 2676
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
BciVI	GTATCC	2 cut(s)	1000, 2892
BcoDI	GTCTC	4 cut(s)	327, 479, 857, 2202
BfaI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
BfmI	CTRYAG	3 cut(s)	2127, 2725, 2833
BfrI	CTTAAG	1 cut(s)	1637
BfuAI	ACCTGC	3 cut(s)	1120, 1339, 2164
BfuI	GTATCC	2 cut(s)	1000, 2892
BlpI	GCTNAGC	1 cut(s)	1017
Bme1390I	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
Bme18I	GGWCC	2 cut(s)	1094, 2221
BmeRI	GACNNNNNGTC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	2788
BmgT120I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
BmiI	GGNNCC	4 cut(s)	294, 558, 1263, 2223
BmrFI	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	4 cut(s)	1374, 1476, 1735, 2722
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	5 cut(s)	73, 848, 872, 1384, 2540
BplI	GAGNNNNNCTC	4 cut(s)	55, 87, 1600, 1632
BpmI	CTGGAG	6 cut(s)	82, 192, 309, 443, 839, 2166
Bpu10I	CCTNAGC	2 cut(s)	461, 624
Bpu1102I	GCTNAGC	1 cut(s)	1017
BpuEI	CTTGAG	1 cut(s)	2870
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	2465
BsaI	GGTCTC	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	1208, 1805
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 1561, 1591
Bsc4I	CCNNNNNNNGG	6 cut(s)	1002, 1275, 1431, 1940, 2622, 2915
Bse1I	ACTGG	4 cut(s)	215, 426, 957, 2436
Bse3DI	GCAATG	3 cut(s)	618, 1488, 2083
BseAI	TCCGGA	1 cut(s)	1805
BseBI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
BseCI	ATCGAT	1 cut(s)	438
BseGI	GGATG	8 cut(s)	348, 517, 886, 1726, 2055, 2071, 2597, 2737
BseLI	CCNNNNNNNGG	6 cut(s)	1002, 1275, 1431, 1940, 2622, 2915
BseMI	GCAATG	3 cut(s)	618, 1488, 2083
BseMII	CTCAG	7 cut(s)	62, 205, 452, 599, 884, 905, 1533
BseNI	ACTGG	4 cut(s)	215, 426, 957, 2436
BsePI	GCGCGC	1 cut(s)	1652
BseRI	GAGGAG	7 cut(s)	10, 30, 478, 481, 1779, 2378, 2529
BseSI	GKGCMC	2 cut(s)	792, 1302
BseYI	CCCAGC	1 cut(s)	1021
BsgI	GTGCAG	1 cut(s)	2445
Bsh1236I	CGCG	4 cut(s)	695, 1652, 1654, 2338
BshFI	GGCC	9 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792, 2615
BshNI	GGYRCC	2 cut(s)	292, 1261
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	792, 2832
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	1209, 1806
BslFI	GGGAC	3 cut(s)	82, 319, 358
BslI	CCNNNNNNNGG	6 cut(s)	1002, 1275, 1431, 1940, 2622, 2915
BsmAI	GTCTC	4 cut(s)	327, 479, 857, 2202
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	3 cut(s)	82, 319, 358
BsmI	GAATGC	2 cut(s)	1612, 1886
BsnI	GGCC	9 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792, 2615
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	792, 1302, 2832
Bsp13I	TCCGGA	1 cut(s)	1805
Bsp1407I	TGTACA	2 cut(s)	1063, 2680
Bsp143I	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
Bsp1720I	GCTNAGC	1 cut(s)	1017
Bsp19I	CCATGG	2 cut(s)	362, 1333
BspANI	GGCC	9 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792, 2615
BspCNI	CTCAG	7 cut(s)	61, 204, 453, 600, 885, 906, 1534
BspDI	ATCGAT	1 cut(s)	438
BspEI	TCCGGA	1 cut(s)	1805
BspFNI	CGCG	4 cut(s)	695, 1652, 1654, 2338
BspLI	GGNNCC	4 cut(s)	294, 558, 1263, 2223
BspMAI	CTGCAG	2 cut(s)	2131, 2729
BspMI	ACCTGC	3 cut(s)	1120, 1339, 2164
BspPI	GGATC	4 cut(s)	1187, 1345, 1964, 2799
BspT107I	GGYRCC	2 cut(s)	292, 1261
BspTI	CTTAAG	1 cut(s)	1637
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	3 cut(s)	618, 1488, 2083
BsrGI	TGTACA	2 cut(s)	1063, 2680
BsrI	ACTGG	4 cut(s)	215, 426, 957, 2436
BssHII	GCGCGC	1 cut(s)	1652
BssMI	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
BssT1I	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
Bst2UI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
Bst4CI	ACNGT	5 cut(s)	830, 1980, 2038, 2299, 2570
Bst6I	CTCTTC	4 cut(s)	125, 155, 175, 2198
BstAFI	CTTAAG	1 cut(s)	1637
BstAUI	TGTACA	2 cut(s)	1063, 2680
BstBAI	YACGTR	1 cut(s)	2465
BstC8I	GCNNGC	9 cut(s)	555, 566, 693, 1495, 1654, 2480, 2725, 2737, 2840
BstDSI	CCRYGG	3 cut(s)	362, 693, 1333
BstF5I	GGATG	8 cut(s)	348, 517, 886, 1726, 2055, 2071, 2597, 2737
BstFNI	CGCG	4 cut(s)	695, 1652, 1654, 2338
BstHHI	GCGC	4 cut(s)	673, 1654, 1656, 2338
BstKTI	GATC	8 cut(s)	1195, 1340, 1507, 1756, 1972, 2269, 2278, 2794
BstMAI	GTCTC	4 cut(s)	327, 479, 857, 2202
BstMBI	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 668, 1586, 2249, 2414, 2475
BstNI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
BstNSI	RCATGY	1 cut(s)	2784
BstSCI	CCNGG	5 cut(s)	288, 995, 1150, 1372, 1497
BstSFI	CTRYAG	3 cut(s)	2127, 2725, 2833
BstSLI	GKGCMC	2 cut(s)	792, 1302
BstUI	CGCG	4 cut(s)	695, 1652, 1654, 2338
BstV2I	GAAGAC	5 cut(s)	73, 848, 872, 1384, 2540
BstX2I	RGATCY	3 cut(s)	1337, 1969, 2791
BstXI	CCANNNNNNTGG	1 cut(s)	2066
BstYI	RGATCY	3 cut(s)	1337, 1969, 2791
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	2 cut(s)	1000, 2892
BsuRI	GGCC	9 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792, 2615
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	3 cut(s)	362, 693, 1333
BtgZI	GCGATG	1 cut(s)	1828
BtrI	CACGTC	1 cut(s)	2788
BtsCI	GGATG	8 cut(s)	348, 517, 886, 1726, 2055, 2071, 2597, 2737
BtsIMutI	CAGTG	4 cut(s)	605, 1629, 1985, 2429
BveI	ACCTGC	3 cut(s)	1120, 1339, 2164
Cac8I	GCNNGC	9 cut(s)	555, 566, 693, 1495, 1654, 2480, 2725, 2737, 2840
CaiI	CAGNNNCTG	1 cut(s)	2611
CfoI	GCGC	4 cut(s)	673, 1654, 1656, 2338
Cfr13I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
Cfr42I	CCGCGG	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	7 cut(s)	293, 451, 1064, 1329, 1523, 2189, 2681
CviQI	GTAC	7 cut(s)	293, 451, 1064, 1329, 1523, 2189, 2681
DpnI	GATC	8 cut(s)	1194, 1339, 1506, 1755, 1971, 2268, 2277, 2793
DpnII	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
DrdI	GACNNNNNNGTC	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	849
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	801, 1790
Eam1104I	CTCTTC	4 cut(s)	125, 155, 175, 2198
Eam1105I	GACNNNNNGTC	1 cut(s)	849
EarI	CTCTTC	4 cut(s)	125, 155, 175, 2198
EciI	GGCGGA	2 cut(s)	497, 1447
Ecl136II	GAGCTC	1 cut(s)	2830
Eco130I	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
Eco147I	AGGCCT	2 cut(s)	581, 1497
Eco24I	GRGCYC	1 cut(s)	2832
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	1094, 2221
Eco53kI	GAGCTC	1 cut(s)	2830
Eco57I	CTGAAG	7 cut(s)	106, 1803, 1841, 1986, 2292, 2493, 2588
Eco72I	CACGTG	1 cut(s)	2465
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	2830
EcoO109I	RGGNCCY	2 cut(s)	1402, 2221
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
EcoT14I	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
EcoT22I	ATGCAT	3 cut(s)	723, 1728, 2782
EcoT38I	GRGCYC	1 cut(s)	2832
ErhI	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
Esp3I	CGTCTC	1 cut(s)	479
FaqI	GGGAC	3 cut(s)	82, 319, 358
FauI	CCCGC	2 cut(s)	700, 2616
FauNDI	CATATG	1 cut(s)	1233
FokI	GGATG	8 cut(s)	335, 524, 893, 1713, 2042, 2078, 2584, 2744
FriOI	GRGCYC	1 cut(s)	2832
FspBI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
GlaI	GCGC	4 cut(s)	672, 1653, 1655, 2337
GsaI	CCCAGC	1 cut(s)	1025
GsuI	CTGGAG	6 cut(s)	82, 192, 309, 443, 839, 2166
HaeIII	GGCC	9 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792, 2615
HapII	CCGG	2 cut(s)	1209, 1806
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	4 cut(s)	673, 1654, 1656, 2338
Hin6I	GCGC	4 cut(s)	671, 1652, 1654, 2336
HinP1I	GCGC	4 cut(s)	671, 1652, 1654, 2336
HincII	GTYRAC	2 cut(s)	1959, 2134
HindII	GTYRAC	2 cut(s)	1959, 2134
HindIII	AAGCTT	3 cut(s)	1595, 1862, 2866
HpaI	GTTAAC	1 cut(s)	1959
HpaII	CCGG	2 cut(s)	1209, 1806
HphI	GGTGA	8 cut(s)	292, 302, 751, 2019, 2299, 2392, 2498, 2930
Hpy166II	GTNNAC	9 cut(s)	790, 1097, 1959, 2134, 2342, 2400, 2579, 2683, 2699
Hpy8I	GTNNAC	9 cut(s)	790, 1097, 1959, 2134, 2342, 2400, 2579, 2683, 2699
Hpy99I	CGWCG	1 cut(s)	263
HpyCH4III	ACNGT	5 cut(s)	830, 1980, 2038, 2299, 2570
HpyCH4IV	ACGT	5 cut(s)	922, 1455, 2328, 2464, 2787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 668, 1586, 2249, 2414, 2475
HpySE526I	ACGT	5 cut(s)	922, 1455, 2328, 2464, 2787
HspAI	GCGC	4 cut(s)	671, 1652, 1654, 2336
Kpn2I	TCCGGA	1 cut(s)	1805
KpnI	GGTACC	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	1959
KspI	CCGCGG	1 cut(s)	696
Kzo9I	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
LmnI	GCTCC	3 cut(s)	562, 628, 2827
LweI	GCATC	4 cut(s)	1374, 1476, 1735, 2722
MaeI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
MaeII	ACGT	5 cut(s)	922, 1455, 2328, 2464, 2787
MaeIII	GTNAC	6 cut(s)	1625, 2320, 2425, 2630, 2783, 2918
MalI	GATC	8 cut(s)	1194, 1339, 1506, 1755, 1971, 2268, 2277, 2793
MboI	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
MfeI	CAATTG	2 cut(s)	1082, 2962
MflI	RGATCY	3 cut(s)	1337, 1969, 2791
MhlI	GDGCHC	3 cut(s)	792, 1302, 2832
MlsI	TGGCCA	1 cut(s)	803
MluNI	TGGCCA	1 cut(s)	803
MlyI	GAGTC	8 cut(s)	61, 233, 434, 1776, 2265, 2530, 2756, 2767
MmeI	TCCRAC	4 cut(s)	56, 159, 165, 2510
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	3 cut(s)	723, 1728, 2782
MroI	TCCGGA	1 cut(s)	1805
MroXI	GAANNNNTTC	1 cut(s)	1515
MscI	TGGCCA	1 cut(s)	803
MslI	CAYNNNNRTG	5 cut(s)	797, 1905, 2064, 2708, 2781
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	3 cut(s)	695, 2126, 2623
MspCI	CTTAAG	1 cut(s)	1637
MspI	CCGG	2 cut(s)	1209, 1806
MspR9I	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
MunI	CAATTG	2 cut(s)	1082, 2962
Mva1269I	GAATGC	2 cut(s)	1612, 1886
MvaI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
MvnI	CGCG	4 cut(s)	695, 1652, 1654, 2338
MwoI	GCNNNNNNNGC	6 cut(s)	11, 668, 1586, 2249, 2414, 2475
NcoI	CCATGG	2 cut(s)	362, 1333
NdeI	CATATG	1 cut(s)	1233
NdeII	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
NlaIV	GGNNCC	4 cut(s)	294, 558, 1263, 2223
NmeAIII	GCCGAG	1 cut(s)	1736
NmuCI	GTSAC	4 cut(s)	1625, 2425, 2783, 2918
NsiI	ATGCAT	3 cut(s)	723, 1728, 2782
NspI	RCATGY	1 cut(s)	2784
PaeR7I	CTCGAG	1 cut(s)	269
PasI	CCCWGGG	1 cut(s)	996
PauI	GCGCGC	1 cut(s)	1652
PceI	AGGCCT	2 cut(s)	581, 1497
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	2 cut(s)	1612, 1886
PdmI	GAANNNNTTC	1 cut(s)	1515
PfeI	GAWTC	8 cut(s)	329, 342, 751, 823, 1240, 1738, 1825, 1919
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	1275
PfoI	TCCNGGA	1 cut(s)	1372
PleI	GAGTC	8 cut(s)	60, 233, 433, 1775, 2264, 2530, 2756, 2767
PmaCI	CACGTG	1 cut(s)	2465
PmlI	CACGTG	1 cut(s)	2465
PpsI	GAGTC	8 cut(s)	60, 233, 433, 1775, 2264, 2530, 2756, 2767
Ppu21I	YACGTR	1 cut(s)	2465
PpuMI	RGGWCCY	1 cut(s)	2221
PshBI	ATTAAT	1 cut(s)	1437
PsiI	TTATAA	2 cut(s)	2378, 2591
Psp124BI	GAGCTC	1 cut(s)	2832
Psp5II	RGGWCCY	1 cut(s)	2221
Psp6I	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
PspCI	CACGTG	1 cut(s)	2465
PspFI	CCCAGC	1 cut(s)	1021
PspGI	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
PspN4I	GGNNCC	4 cut(s)	294, 558, 1263, 2223
PspPI	GGNCC	4 cut(s)	706, 1094, 1402, 2221
PspPPI	RGGWCCY	1 cut(s)	2221
PstI	CTGCAG	2 cut(s)	2131, 2729
PstNI	CAGNNNCTG	1 cut(s)	2611
PsuI	RGATCY	3 cut(s)	1337, 1969, 2791
PsyI	GACNNNGTC	1 cut(s)	242
PteI	GCGCGC	1 cut(s)	1652
PvuII	CAGCTG	1 cut(s)	2126
RsaI	GTAC	7 cut(s)	294, 452, 1065, 1330, 1524, 2190, 2682
RsaNI	GTAC	7 cut(s)	293, 451, 1064, 1329, 1523, 2189, 2681
RseI	CAYNNNNRTG	5 cut(s)	797, 1905, 2064, 2708, 2781
SacI	GAGCTC	1 cut(s)	2832
SacII	CCGCGG	1 cut(s)	696
Sau3AI	GATC	8 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275, 2791
Sau96I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
SbfI	CCTGCAGG	1 cut(s)	2729
SchI	GAGTC	8 cut(s)	61, 233, 434, 1776, 2265, 2530, 2756, 2767
ScrFI	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
SdaI	CCTGCAGG	1 cut(s)	2729
SduI	GDGCHC	3 cut(s)	792, 1302, 2832
SfaNI	GCATC	4 cut(s)	1374, 1476, 1735, 2722
SfcI	CTRYAG	3 cut(s)	2127, 2725, 2833
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	696
SgrBI	CCGCGG	1 cut(s)	696
SinI	GGWCC	2 cut(s)	1094, 2221
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	5 cut(s)	797, 1905, 2064, 2708, 2781
SmlI	CTYRAG	3 cut(s)	269, 1637, 2849
SmoI	CTYRAG	3 cut(s)	269, 1637, 2849
Sse8387I	CCTGCAGG	1 cut(s)	2729
SseBI	AGGCCT	2 cut(s)	581, 1497
SspI	AATATT	1 cut(s)	1369
SspMI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
SstI	GAGCTC	1 cut(s)	2832
StuI	AGGCCT	2 cut(s)	581, 1497
StyD4I	CCNGG	5 cut(s)	288, 995, 1150, 1372, 1497
StyI	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
TaaI	ACNGT	5 cut(s)	830, 1980, 2038, 2299, 2570
TaiI	ACGT	5 cut(s)	925, 1458, 2331, 2467, 2790
TaqI	TCGA	6 cut(s)	261, 270, 438, 1407, 1762, 2265
TatI	WGTACW	3 cut(s)	450, 1063, 2680
TauI	GCSGC	4 cut(s)	676, 875, 1142, 1792
TfiI	GAWTC	8 cut(s)	329, 342, 751, 823, 1240, 1738, 1825, 1919
TscAI	CASTG	4 cut(s)	612, 1636, 1985, 2436
TseFI	GTSAC	4 cut(s)	1625, 2425, 2783, 2918
Tsp45I	GTSAC	4 cut(s)	1625, 2425, 2783, 2918
TspDTI	ATGAA	9 cut(s)	296, 337, 897, 1004, 1676, 1817, 1857, 2216, 2813
TspGWI	ACGGA	2 cut(s)	232, 503
TspRI	CASTG	4 cut(s)	612, 1636, 1985, 2436
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	1275
Vha464I	CTTAAG	1 cut(s)	1637
VneI	GTGCAC	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	1094, 2221
VspI	ATTAAT	1 cut(s)	1437
XapI	RAATTY	7 cut(s)	274, 284, 305, 1557, 1775, 2674, 2854
XceI	RCATGY	1 cut(s)	2784
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1088, 2462
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	1515
XspI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
Zsp2I	ATGCAT	3 cut(s)	723, 1728, 2782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.