RchiOBHm_Chr2g0090271

PP-loop family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008644
Physical Location & Seq
Reverse (-)
4144931 .. 4148575
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46552

Sequence Viewer

Length: 2043 bp
ATGGCGGGAGGGGTTATCCTATCGTCCCAAACCACAACCCAAACCTTACTCTTTTCCATTCCCAAAATACCCTTCCCACTATGGAAGCTCCCCTTCATTTCCCGCCAATTTTCCTGCAAGTGCTCCCAAACCACCCAAGTCGCAGCAGCAGTGGACTTGGCCAAGTACAAAGAAGCTTTCTCTAGACGAATGGACATGGCCGGCCTCAAGCCCCACCACCGAATCGCTATTGGAGTTTCTGGAGGTCCGGATAGTATGGCCTTGTGTGCTTTAACTGCGTACTGGAAAGGACAGGGGTATGATGGTAAATGTGATGAGGGATTCATTGATGGGGTTTTGGCTATAATTGTGGATCATGGGCTGCGAGAAGAGAGCACGGAAGAGGCCAGCATTGTTTCCAATCGTGTCGCGAAAATGGGAATCAGAAGTGATGTTGCCTGTTGTGATTGGGAGGATGGTAAGCCGAAACAAGGTCATGTGCAAGAAGCAGCTCGCGAAATGAGGTACCAGATATTTCAGAACGTTTGTATCAAGAACCAGATTGGTGTGTTACTTACGGCACATCATGCTGATGACCAGGCTGAGTTATTTGTTATCAGACTATCTCGCAATAGCGGTATTCTTGGACTTGCTGGTATGCCTTTCACATCTCAAATTTTCTCCTCGCACACCCATTCTCATACTGAAGTTTCTAGAAACTATGGTATTCTTCTTGTGAGACCACTCCTGGATTTTTCAAAAGAAGATATGTACAAGATATGCCAAGGGAGTGATCAGGAATGGGTGGAAGACCCAACAAATCAAAGCCTGTTATATGCTCGTAATAGAATTCGAATGTCCTTAAGGGACGCATCATGTGCATTCAAAAATGAGCTACAAGCAGTAATAACTGCTTGTCGGAAAACACGCGTATATATTGATCATGTTTGCCGTGCTTTGATGTCTAAAGCAGTGACCGTTTCTCATCTAGGATATGCGGTTATTGATTTAGAGATTCTTAATCAATCAAAAGTGGAGGACATATGCCTGTCAAAGTTCATTTCCTTAGTTTTGCAGTTCATCTCACAAAGGCACAGACCACTTAGAGGTAATACTTCAAAATTGCTTGTTGGTTACCTGCGTAGTTTCCCATGCAAGACATCTGTTACTGCAGCTGGCTGCTTCCTTTCTCCAGCTCCTGGGTCTAGAGGCACAAAAGCCCTGGTGTGCTGTTCTGTTGATTCTCCTCTGCCTTCAAATATAGGGTTATCCCATCAACACTTTCAAGCAGTACAAGAACACTCTACTCCAGATGAGATAGAGCAAATTATCGCTGATGGCAAATCCTATGCAGATCACTTGGTTCCAAATGCATCAGATGTGCCTTTCTTAGAAGTAACATCTAAATCTGTTTTAACTGAAGCGAGGAGGCTTGGTATGATTAGTGAGGCAACCCATACAAATATTCTTTCATTGCAGAAGGAAGAGATCGAGCATTTCAAGTCCAAGAGTGAAGTAAAAGCTGACTACAAGTCAAAGCATGGAGTCAAATCTATTAGTACATCACCCAGTGAACCACTTCCCCCCGGGCAAATATGTTGCTTCATGAACCGATTTTTTATCACATGGAAACTGAGTGAAGTTTCTGAGGAAGCTTTGGAGGGGGAAAGTCGGTGTGGTGGCAAATCTTGTATTGGCCATGACACAGTGCTTGAGGTGCGGAACATGAGTGAACAGGATTGGCTGTATCTTTCCGACTTGTCAAAGTCTCATACTTCGGGGAACCTTCAAGAACAAAGCAACTCTTTGGATAGGAAGGTAGAACAAAGAAAAGAGGAGACAGACACTTCTCTAGACTATGCAAGGATTTCAGCACAAAGAGCTCTTCAATCCCTGAAATCTATTCCTGCTGCTGCAAGAAGGGGCCTGCCTGTTCTGGTCAATAATCAAGGACTTCTGCTAAGCATACCAAGCATCGACTTCCAAGGCTGCTCATGCTTAATGGTCTCTGCGACATTCAAGCCAAAAGTACCACTTGGGGGAGACCATAGTTCGTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP_bind_3

Protein Analysis

680

Amino Acids

75.09

Weight (kDa)

7.77

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_3 PF01171 75 - 279 9.3e-52 PP-loop domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1125
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AccB7I CCANNNNNTGG 1 cut(s) 1178
AccII CGCG 3 cut(s) 410, 495, 909
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 5 cut(s) 5, 103, 615, 977, 1699
AclI AACGTT 1 cut(s) 522
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 3 cut(s) 159, 198, 1675
AcsI RAATTY 2 cut(s) 654, 828
AcuI CTGAAG 2 cut(s) 705, 1419
AdeI CACNNNGTG 1 cut(s) 1550
AfaI GTAC 7 cut(s) 167, 281, 506, 752, 1272, 1540, 2010
AfiI CCNNNNNNNGG 4 cut(s) 470, 1085, 1178, 2018
AflII CTTAAG 1 cut(s) 841
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 9 cut(s) 738, 865, 1098, 1236, 1265, 1480, 1769, 1868, 1999
AhdI GACNNNNNGTC 1 cut(s) 1510
AjnI CCWGG 4 cut(s) 576, 726, 1177, 1200
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 9 cut(s) 88, 176, 491, 874, 1154, 1175, 1502, 1634, 1862
AluI AGCT 9 cut(s) 88, 176, 491, 874, 1154, 1175, 1502, 1634, 1862
Alw21I GWGCWC 3 cut(s) 125, 377, 1864
Alw26I GTCTC 5 cut(s) 712, 1752, 1811, 1990, 2016
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 1178
Ama87I CYCGRG 1 cut(s) 1565
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 7 cut(s) 159, 198, 202, 258, 384, 1675, 1903
ApeKI GCWGC 9 cut(s) 143, 146, 361, 488, 1151, 1158, 1889, 1892, 1968
ApoI RAATTY 2 cut(s) 654, 828
Asp700I GAANNNNTTC 1 cut(s) 1557
Asp718I GGTACC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 245, 1903
AsuC2I CCSGG 2 cut(s) 1566, 1567
AsuHPI GGTGA 1 cut(s) 1536
AsuII TTCGAA 1 cut(s) 832
AvaI CYCGRG 1 cut(s) 1565
AvaII GGWCC 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 511, 544
BalI TGGCCA 2 cut(s) 161, 1677
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 1864
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 3 cut(s) 125, 377, 1864
BbvI GCAGC 9 cut(s) 155, 158, 348, 500, 1145, 1163, 1876, 1879, 1955
BccI CCATC 5 cut(s) 296, 323, 449, 1260, 1310
BceAI ACGGC 2 cut(s) 573, 915
BciT130I CCWGG 4 cut(s) 578, 728, 1179, 1202
BclI TGATCA 2 cut(s) 772, 919
BcnI CCSGG 2 cut(s) 1566, 1567
BcoDI GTCTC 5 cut(s) 712, 1752, 1811, 1990, 2016
BfaI CTAG 6 cut(s) 183, 693, 968, 1185, 1832, 2041
BfmI CTRYAG 1 cut(s) 1149
BfrI CTTAAG 1 cut(s) 841
BfuAI ACCTGC 1 cut(s) 1125
BisI GCNGC 9 cut(s) 144, 147, 362, 489, 1152, 1159, 1890, 1893, 1969
BlpI GCTNAGC 1 cut(s) 1940
BlsI GCNGC 9 cut(s) 145, 148, 363, 490, 1153, 1160, 1891, 1894, 1970
Bme1390I CCNGG 6 cut(s) 578, 728, 1179, 1202, 1566, 1567
Bme18I GGWCC 1 cut(s) 245
BmeRI GACNNNNNGTC 1 cut(s) 1510
BmeT110I CYCGRG 1 cut(s) 1565
BmgT120I GGNCC 2 cut(s) 245, 1903
BmiI GGNNCC 4 cut(s) 506, 1344, 1763, 1904
BmrFI CCNGG 6 cut(s) 578, 728, 1179, 1202, 1566, 1567
BmrI ACTGGG 1 cut(s) 1542
BmsI GCATC 3 cut(s) 860, 1361, 1962
BmuI ACTGGG 1 cut(s) 1542
BpiI GAAGAC 1 cut(s) 795
BpmI CTGGAG 3 cut(s) 261, 1155, 1272
Bpu1102I GCTNAGC 1 cut(s) 1940
Bpu14I TTCGAA 1 cut(s) 832
BpuEI CTTGAG 2 cut(s) 191, 1712
BpuMI CCSGG 2 cut(s) 1566, 1567
BsaI GGTCTC 3 cut(s) 712, 1990, 2016
BsaJI CCNNGG 6 cut(s) 763, 1178, 1200, 1564, 1565, 1963
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 1399, 1429
Bsc4I CCNNNNNNNGG 4 cut(s) 470, 1085, 1178, 2018
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 287, 1548
Bse3DI GCAATG 1 cut(s) 1451
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 4 cut(s) 578, 728, 1179, 1202
BseDI CCNNGG 6 cut(s) 763, 1178, 1200, 1564, 1565, 1963
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 4 cut(s) 470, 1085, 1178, 2018
BseMI GCAATG 1 cut(s) 1451
BseMII CTCAG 3 cut(s) 573, 1604, 1617
BseNI ACTGG 2 cut(s) 287, 1548
BseRI GAGGAG 4 cut(s) 652, 1215, 1420, 1829
BseXI GCAGC 9 cut(s) 155, 158, 348, 500, 1145, 1163, 1876, 1879, 1955
Bsh1236I CGCG 3 cut(s) 410, 495, 909
BshFI GGCC 7 cut(s) 161, 200, 204, 260, 386, 1677, 1905
BshNI GGYRCC 1 cut(s) 504
BsiHKAI GWGCWC 3 cut(s) 125, 377, 1864
BsiHKCI CYCGRG 1 cut(s) 1565
BsiSI CCGG 3 cut(s) 201, 248, 1566
BslFI GGGAC 2 cut(s) 10, 860
BslI CCNNNNNNNGG 4 cut(s) 470, 1085, 1178, 2018
BsmAI GTCTC 5 cut(s) 712, 1752, 1811, 1990, 2016
BsmFI GGGAC 2 cut(s) 10, 860
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 7 cut(s) 161, 200, 204, 260, 386, 1677, 1905
Bso31I GGTCTC 3 cut(s) 712, 1990, 2016
BsoBI CYCGRG 1 cut(s) 1565
Bsp119I TTCGAA 1 cut(s) 832
Bsp1286I GDGCHC 3 cut(s) 125, 377, 1864
Bsp13I TCCGGA 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 5 cut(s) 352, 772, 919, 1333, 1467
Bsp1720I GCTNAGC 1 cut(s) 1940
Bsp68I TCGCGA 2 cut(s) 410, 495
BspACI CCGC 5 cut(s) 5, 103, 615, 977, 1699
BspANI GGCC 7 cut(s) 161, 200, 204, 260, 386, 1677, 1905
BspCNI CTCAG 3 cut(s) 574, 1605, 1618
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 3 cut(s) 410, 495, 909
BspHI TCATGA 1 cut(s) 1584
BspLI GGNNCC 4 cut(s) 506, 1344, 1763, 1904
BspMAI CTGCAG 1 cut(s) 1153
BspMI ACCTGC 1 cut(s) 1125
BspPI GGATC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 1869
BspT104I TTCGAA 1 cut(s) 832
BspT107I GGYRCC 1 cut(s) 504
BspTI CTTAAG 1 cut(s) 841
BspTNI GGTCTC 3 cut(s) 712, 1990, 2016
BsrDI GCAATG 1 cut(s) 1451
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 2 cut(s) 287, 1548
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 6 cut(s) 763, 1178, 1200, 1564, 1565, 1963
BssMI GATC 5 cut(s) 352, 772, 919, 1333, 1467
BssT1I CCWWGG 2 cut(s) 763, 1963
Bst2UI CCWGG 4 cut(s) 578, 728, 1179, 1202
Bst4CI ACNGT 2 cut(s) 958, 1687
Bst6I CTCTTC 4 cut(s) 363, 375, 1458, 1869
BstAFI CTTAAG 1 cut(s) 841
BstAPI GCANNNNNTGC 2 cut(s) 566, 857
BstAUI TGTACA 1 cut(s) 750
BstBI TTCGAA 1 cut(s) 832
BstC8I GCNNGC 5 cut(s) 202, 388, 493, 1156, 1907
BstDEI CTNAG 7 cut(s) 582, 1045, 1082, 1369, 1613, 1626, 1940
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 3 cut(s) 410, 495, 909
BstKTI GATC 5 cut(s) 355, 775, 922, 1336, 1470
BstMAI GTCTC 5 cut(s) 712, 1752, 1811, 1990, 2016
BstMBI GATC 5 cut(s) 352, 772, 919, 1333, 1467
BstMWI GCNNNNNNNGC 8 cut(s) 266, 275, 566, 857, 1696, 1859, 1950, 1974
BstNI CCWGG 4 cut(s) 578, 728, 1179, 1202
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 6 cut(s) 576, 726, 1177, 1200, 1564, 1565
BstSFI CTRYAG 1 cut(s) 1149
BstUI CGCG 3 cut(s) 410, 495, 909
BstV1I GCAGC 9 cut(s) 155, 158, 348, 500, 1145, 1163, 1876, 1879, 1955
BstV2I GAAGAC 1 cut(s) 795
BsuRI GGCC 7 cut(s) 161, 200, 204, 260, 386, 1677, 1905
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 2 cut(s) 156, 957
BtsIMutI CAGTG 4 cut(s) 156, 957, 1555, 1692
BtuMI TCGCGA 2 cut(s) 410, 495
BveI ACCTGC 1 cut(s) 1125
Cac8I GCNNGC 5 cut(s) 202, 388, 493, 1156, 1907
CaiI CAGNNNCTG 1 cut(s) 1178
CciI TCATGA 1 cut(s) 1584
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 245, 1903
Cfr9I CCCGGG 1 cut(s) 1565
CseI GACGC 1 cut(s) 857
Csp6I GTAC 7 cut(s) 166, 280, 505, 751, 1271, 1539, 2009
CviQI GTAC 7 cut(s) 166, 280, 505, 751, 1271, 1539, 2009
DdeI CTNAG 7 cut(s) 582, 1045, 1082, 1369, 1613, 1626, 1940
DpnI GATC 5 cut(s) 354, 774, 921, 1335, 1469
DpnII GATC 5 cut(s) 352, 772, 919, 1333, 1467
DraIII CACNNNGTG 1 cut(s) 1550
DriI GACNNNNNGTC 1 cut(s) 1510
EaeI YGGCCR 3 cut(s) 159, 198, 1675
Eam1104I CTCTTC 4 cut(s) 363, 375, 1458, 1869
Eam1105I GACNNNNNGTC 1 cut(s) 1510
EarI CTCTTC 4 cut(s) 363, 375, 1458, 1869
Ecl136II GAGCTC 1 cut(s) 1862
Eco130I CCWWGG 2 cut(s) 763, 1963
Eco24I GRGCYC 1 cut(s) 1864
Eco31I GGTCTC 3 cut(s) 712, 1990, 2016
Eco47I GGWCC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 1862
Eco57I CTGAAG 2 cut(s) 705, 1419
Eco88I CYCGRG 1 cut(s) 1565
Eco91I GGTNACC 1 cut(s) 1112
EcoICRI GAGCTC 1 cut(s) 1862
EcoO109I RGGNCCY 1 cut(s) 1903
EcoO65I GGTNACC 1 cut(s) 1112
EcoRI GAATTC 1 cut(s) 828
EcoRII CCWGG 4 cut(s) 576, 726, 1177, 1200
EcoT14I CCWWGG 2 cut(s) 763, 1963
EcoT22I ATGCAT 1 cut(s) 1354
EcoT38I GRGCYC 1 cut(s) 1864
ErhI CCWWGG 2 cut(s) 763, 1963
FalI AAGNNNNNCTT 6 cut(s) 77, 109, 1768, 1800, 1998, 2030
FaqI GGGAC 2 cut(s) 10, 860
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 1022
FbaI TGATCA 2 cut(s) 772, 919
Fnu4HI GCNGC 9 cut(s) 144, 147, 362, 489, 1152, 1159, 1890, 1893, 1969
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 1864
FseI GGCCGGCC 1 cut(s) 204
Fsp4HI GCNGC 9 cut(s) 144, 147, 362, 489, 1152, 1159, 1890, 1893, 1969
FspBI CTAG 6 cut(s) 183, 693, 968, 1185, 1832, 2041
GluI GCNGC 9 cut(s) 144, 147, 362, 489, 1152, 1159, 1890, 1893, 1969
GsuI CTGGAG 3 cut(s) 261, 1155, 1272
HaeIII GGCC 7 cut(s) 161, 200, 204, 260, 386, 1677, 1905
HapII CCGG 3 cut(s) 201, 248, 1566
HgaI GACGC 1 cut(s) 857
HindIII AAGCTT 2 cut(s) 174, 1632
HinfI GANTC 6 cut(s) 222, 321, 420, 994, 1220, 1524
HpaII CCGG 3 cut(s) 201, 248, 1566
HphI GGTGA 1 cut(s) 1536
Hpy166II GTNNAC 3 cut(s) 154, 1553, 1712
Hpy188I TCNGA 7 cut(s) 425, 519, 599, 900, 1357, 1627, 1735
Hpy8I GTNNAC 3 cut(s) 154, 1553, 1712
HpyAV CCTTC 7 cut(s) 82, 103, 1242, 1453, 1775, 1789, 1893
HpyCH4III ACNGT 2 cut(s) 958, 1687
HpyCH4IV ACGT 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 8 cut(s) 266, 275, 566, 857, 1696, 1859, 1950, 1974
HpyF3I CTNAG 7 cut(s) 582, 1045, 1082, 1369, 1613, 1626, 1940
HpySE526I ACGT 1 cut(s) 522
Kpn2I TCCGGA 1 cut(s) 247
KpnI GGTACC 1 cut(s) 508
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Ksp22I TGATCA 2 cut(s) 772, 919
Kzo9I GATC 5 cut(s) 352, 772, 919, 1333, 1467
LguI GCTCTTC 1 cut(s) 1869
LmnI GCTCC 3 cut(s) 93, 128, 1180
Lsp1109I GCAGC 9 cut(s) 155, 158, 348, 500, 1145, 1163, 1876, 1879, 1955
LweI GCATC 3 cut(s) 860, 1361, 1962
MaeI CTAG 6 cut(s) 183, 693, 968, 1185, 1832, 2041
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 5 cut(s) 549, 952, 1112, 1144, 1375
MalI GATC 5 cut(s) 354, 774, 921, 1335, 1469
MboI GATC 5 cut(s) 352, 772, 919, 1333, 1467
MboII GAAGA 7 cut(s) 380, 392, 701, 755, 800, 1475, 1856
MhlI GDGCHC 3 cut(s) 125, 377, 1864
MlsI TGGCCA 2 cut(s) 161, 1677
MluCI AATT 6 cut(s) 107, 345, 654, 828, 1100, 1305
MluI ACGCGT 1 cut(s) 907
MluNI TGGCCA 2 cut(s) 161, 1677
MlyI GAGTC 1 cut(s) 1533
MmeI TCCRAC 2 cut(s) 878, 1758
Mox20I TGGCCA 2 cut(s) 161, 1677
Mph1103I ATGCAT 1 cut(s) 1354
MroI TCCGGA 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 1557
MscI TGGCCA 2 cut(s) 161, 1677
MseI TTAA 5 cut(s) 272, 842, 999, 1394, 1979
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 2 cut(s) 161, 1677
MspA1I CMGCKG 1 cut(s) 1154
MspCI CTTAAG 1 cut(s) 841
MspI CCGG 3 cut(s) 201, 248, 1566
MspR9I CCNGG 6 cut(s) 578, 728, 1179, 1202, 1566, 1567
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 4 cut(s) 578, 728, 1179, 1202
MvnI CGCG 3 cut(s) 410, 495, 909
MwoI GCNNNNNNNGC 8 cut(s) 266, 275, 566, 857, 1696, 1859, 1950, 1974
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 1566, 1567
NdeI CATATG 1 cut(s) 1022
NdeII GATC 5 cut(s) 352, 772, 919, 1333, 1467
NgoMIV GCCGGC 1 cut(s) 200
NlaIV GGNNCC 4 cut(s) 506, 1344, 1763, 1904
NmuCI GTSAC 1 cut(s) 952
NruI TCGCGA 2 cut(s) 410, 495
NsiI ATGCAT 1 cut(s) 1354
NspV TTCGAA 1 cut(s) 832
PagI TCATGA 1 cut(s) 1584
PciSI GCTCTTC 1 cut(s) 1869
PctI GAATGC 1 cut(s) 860
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 1557
PfeI GAWTC 5 cut(s) 222, 321, 420, 994, 1220
PflMI CCANNNNNTGG 1 cut(s) 1178
PfoI TCCNGGA 1 cut(s) 726
PkrI GCNGC 9 cut(s) 145, 148, 363, 490, 1153, 1160, 1891, 1894, 1970
PleI GAGTC 1 cut(s) 1532
PpsI GAGTC 1 cut(s) 1532
Psp124BI GAGCTC 1 cut(s) 1864
Psp1406I AACGTT 1 cut(s) 522
Psp6I CCWGG 4 cut(s) 576, 726, 1177, 1200
PspEI GGTNACC 1 cut(s) 1112
PspGI CCWGG 4 cut(s) 576, 726, 1177, 1200
PspN4I GGNNCC 4 cut(s) 506, 1344, 1763, 1904
PspPI GGNCC 2 cut(s) 245, 1903
PstI CTGCAG 1 cut(s) 1153
PstNI CAGNNNCTG 1 cut(s) 1178
PvuII CAGCTG 1 cut(s) 1154
RigI GGCCGGCC 1 cut(s) 204
RruI TCGCGA 2 cut(s) 410, 495
RsaI GTAC 7 cut(s) 167, 281, 506, 752, 1272, 1540, 2010
RsaNI GTAC 7 cut(s) 166, 280, 505, 751, 1271, 1539, 2009
RseI CAYNNNNRTG 1 cut(s) 570
SacI GAGCTC 1 cut(s) 1864
SapI GCTCTTC 1 cut(s) 1869
SaqAI TTAA 5 cut(s) 272, 842, 999, 1394, 1979
SatI GCNGC 9 cut(s) 144, 147, 362, 489, 1152, 1159, 1890, 1893, 1969
Sau3AI GATC 5 cut(s) 352, 772, 919, 1333, 1467
Sau96I GGNCC 2 cut(s) 245, 1903
SchI GAGTC 1 cut(s) 1533
ScrFI CCNGG 6 cut(s) 578, 728, 1179, 1202, 1566, 1567
SduI GDGCHC 3 cut(s) 125, 377, 1864
SfaNI GCATC 3 cut(s) 860, 1361, 1962
SfcI CTRYAG 1 cut(s) 1149
SfuI TTCGAA 1 cut(s) 832
SinI GGWCC 1 cut(s) 245
SmaI CCCGGG 1 cut(s) 1567
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 3 cut(s) 206, 841, 1691
SmoI CTYRAG 3 cut(s) 206, 841, 1691
Sse9I AATT 6 cut(s) 107, 345, 654, 828, 1100, 1305
SsiI CCGC 5 cut(s) 5, 103, 615, 977, 1699
SspI AATATT 1 cut(s) 1444
SspMI CTAG 6 cut(s) 183, 693, 968, 1185, 1832, 2041
SstI GAGCTC 1 cut(s) 1864
StyD4I CCNGG 6 cut(s) 576, 726, 1177, 1200, 1564, 1565
StyI CCWWGG 2 cut(s) 763, 1963
TaaI ACNGT 2 cut(s) 958, 1687
TaiI ACGT 1 cut(s) 525
TaqI TCGA 3 cut(s) 832, 1470, 1956
TasI AATT 6 cut(s) 107, 345, 654, 828, 1100, 1305
TatI WGTACW 4 cut(s) 165, 750, 1270, 1538
TfiI GAWTC 5 cut(s) 222, 321, 420, 994, 1220
Tru1I TTAA 5 cut(s) 272, 842, 999, 1394, 1979
Tru9I TTAA 5 cut(s) 272, 842, 999, 1394, 1979
TscAI CASTG 4 cut(s) 156, 957, 1555, 1692
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 9 cut(s) 143, 146, 361, 488, 1151, 1158, 1889, 1892, 1968
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 8 cut(s) 85, 313, 1027, 1048, 1440, 1573, 1601, 2026
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 1565
TspRI CASTG 4 cut(s) 156, 957, 1555, 1692
Van91I CCANNNNNTGG 1 cut(s) 1178
Vha464I CTTAAG 1 cut(s) 841
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 2 cut(s) 654, 828
XbaI TCTAGA 4 cut(s) 182, 692, 1184, 1831
XmaI CCCGGG 1 cut(s) 1565
XmnI GAANNNNTTC 1 cut(s) 1557
XspI CTAG 6 cut(s) 183, 693, 968, 1185, 1832, 2041
Zsp2I ATGCAT 1 cut(s) 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.