Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009569

Physical Location & Seq

Genomic Coordinates Reverse (-)

22376573 .. 22382666

Gene Structure 6094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1261900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGTACACAGTGCCTATGATTCCTTCGAGCTCATCGGTGACTGCTCGACGAAGATCGAAGCCATCGAATCCTACGGTCCGAAGCTCCTCCTCGGCTGCTCCGATGGATCTCTCAAAATCTATGCTCCGGACTCCTCCGGCTCCGACCGCTCTCCGCCGTCTGATTACCACGCGCACAAGCTCCAGAAGGAACCGTACGCGCTTGAGAGGAACGTCGCCGGTTTCTCAAAGAAGCCCTTGGTTTCAATGGAGGTCCTGGAATCCCGAGAGCTCCTACTTTCCCTCTCGGAGTCGATTGCGTTTCACGGCCTCCCGAACCTGGGCACCATCGCCGTGATCACGAAGGCGAAGGGCGCCAATGTCTACTCGTGGGACGACCGCAGAGGATTCCTCTGCTTCGCGAGGCAGAAGCGGGTCTGTATTTTCCGGCACGACGGTGGACGAGGGTTTGTGGAAGTGAAGGAATTTGGGGTCCCGGATGTGGTGAAGTCGATGTCATGGTGTGGAGAAAATATATGCGTAGGGATTAGAAGAGAGTATATGATACTGAATTCTACAAATGGTGCATTGTCTGAGGTGTTTCCTTCGGGGAGAATAGCACCGCCGCTGGTGGTTTCTTTTCCTTCCGGAGAGCTTCTTCTCGGAAAGGATAACATCGGGGTTTTTGTGGACCAAAACGGGAAGCTTTGTCAAGAAGGCAGGGTTTGTTGGTCGGATCCCCCGAATGTTGTTGTTATTCAGAAGCCATATGCAATTGCTCTATTACCAAGATATGTTGAGGTTCGGTCGCTCCGGGATCCCTATCCATTGATACAGACGGTTGTTCTTAGAAATGCTCGTCGTATTCTACAGAGCAATAATGCTGTAATTGTTGCATTAGAGAATGCTGTTTATGGTCTCTTCCCTGTTCCTCTTGGTGCCCAGATTGTACAATTAACAGCATCTGGTGATTTTGATGAAGCGTTGGCATTGTGTAAGATGCTTCCTCCAGAAGAAGCAAGTCTTAGAGCTGCAAAGGAGGCCTCAATTCATATGAGATATGCTCATCATCTTTTTGATAATGGGGCCTATGAAGACGCCATGGAGCACTTTTTAGCATCTCAAGTAGACATAACCTATGTTCTTTCTTTGTATCCATCTATTGTTCTTCCGAAGACAACTATGGTTGCTGTGCCAGAGAAGCTAATGGATATTTCTGGGGATTCATCATACCTCTCAAGAGGTTCGTCTGGTTTATCAGATGATATGGAACACTCTCTTCCGTCTGTACTGGAATCTGAGGAGAGTGCAGCACTCGAGTCCAAAAAAATGAGCCATAACACTCTCATGGCTCTCATAAAGTTCTTACAGAAAAAAAGATATGGCATCATTGAAAAGGCCACTGCTGAGGGAACTGAAGAGGTTGTTTTAGATGCTGTTGGAGACAATTTTGTCTCCTATGAATCTAGGTTTAAGAAATCAAACAAGGGGCGCGGCAGTGTTCCAATTACCTCTGGTGCTAGGGAGATGGCTGCAATCCTGGATACAGTACTACTCCAAGCTCTACTTCTTACTGGACAGGCTTCAGTGGCTTTGGAATTACTGAAAGGTCTTAACTACTGTGAAGTAAAAATATGTGAGGAGATACTCCAGAAAAATAATCATTACGCTGCTTTGTTAGAACTTTACAGGTGCAATTCAATGCACCATGAAGCTCTAAAACTTTTGCATCAATTGGTAGAAGATTCTAAATCTAACCAAGTGCAAACTGAACTGATCCAAAAGTTAAAGCCTGAGTCAATTGTTGAATATCTCAAGCCTCTGTGTGGGACTGATCCCATGCTTGTCCTGGAGTATTCAATGCTTGTTCTTGAAAGTTGTCCAACACAAACAATTCAGCTCTTTCTGAATGGGAATATTCCAGCAGACCTGGTCAACTCTTACTTGAAGCAGCATGCTCCAAACTTGCAGGCCACATACTTAGAGCTTATGCTTGCAATGGATGAAAACGGGGTCTCCGGAAATCTGCAAAATGAAATGGTACATATCTATCTATCAGAAGTACTTGATTGGTATGCAGATTTAAGCGCTCAGCAGAAATGGGATGAGCAAACTTACTCCTCAACAAGAAAGAAATTATTGTCTGCTTTAGAGAGTATCTCAGGATATAGTCCGGAGGTTTTGTTGAAACGTCTTCCAGCGGATGCTTTATACGAAGAGCGTGCAATTTTGTTGGGAAAAATGAACCAACATGAGCTTGCCTTATCTCTCTATGTTCATAAGCTTCATGTTCCTGAGCTGGCACTGTCCTATTGTGATCGCATGTATGAGTCCTTAGTTCATCAACCATCTTCAAGATCTTCCGGCAATATATACCTAACTCTATTACAAATTTATCTTAATCCGAGGAAAACAACCAAGAACTTTGAGAAGCGAATTACAAATTTAGTATCACCTCAGAATATCGGTACACCAAAGGTTGGTTCTGCAAATACAGTTAAAAGTAAAGGAGGTCGTGGTGCTAAAAAAATTGCTGCAATAGAGGTGGCACCTGACATAAGAGTCAGTCAAAGTAGCACTGACAGTAGCAGGAGTGATGGAGATGCAGAGGAATATAGCGAGGAAGGAGGGTCAACAATCATGCTTGATGAGGTCCTCGATTTGTTGAGCCGAAGGTGGGACAGAATTAATGGAGCTCAGGCACTTAAACTTTTGCCAAGGGAAACTAAGCTACAGCACTTGCTTCCATTTATGGGACCTCTGTTGAGAAAATCCAGTGAAGCGTACAGGAACCTTTCGGTGATCAAGAGTTTGAGGCAAAGTGAGAACCTGCAGGTTAAAGATGAACTCTATGAACAAAGGAAAGGGGTGGTGAAGATCACCAGTGATAGCATGTGCTCCCTTTGCAGGAAGAAAATAGGAACAAGTGTCTTTGCCGTGTATCCAAACGGGAAAACACTAGTGCACTTTGTGTGCTTTAGAGACTCGCAAAGTATGAAAACCGTGGGCAGAGGATCGCCGCTATGGAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009506 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030054 GO:0030897 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032991 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061919 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0098876 GO:0099023 GO:1902774 GO:1990126

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

1005

Amino Acids

111.55

Weight (kDa)

6.57

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNH	PF00780	29 - 280	2.7e-20	CNH domain
Clathrin	PF00637	504 - 598	1.1e-06	Region in Clathrin and VPS
Vps39_1	PF10366	507 - 617	1e-24	Vacuolar sorting protein 39 domain 1
zf-Vps39_C	PF10367	950 - 988	1.8e-17	Vacuolar sorting protein 39 C-terminal zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36630 AT4G36630
fragaria_vesca	FvH4_1g13311
malus_domestica	MD02G1147600.v1.1 MD15G1261900.v1.1
prunus_persica	Prupe.7G154500_v2.0.a1
pyrus_communis	pycom02g11660 pycom15g22910
rosa_chinensis	RchiOBHm_Chr2g0101111 RchiOBHm_Chr2g0101581
rosa_laevigata	RLG00000017092
rosa_multiflora	Rmu_sc0006153.1_g000006 Rmu_sc0019613.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141170
rosa_rugosa	Rorug02G0097300 Rorug02G0100900
rosa_samantha	Rh2AG148200 Rh2BG153600 Rh2CG149800 Rh2CG153900 Rh2DG153900
rosa_wichuraiana	Rw2G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1430, 2540
Acc36I	ACCTGC	2 cut(s)	2803, 2817
AccB1I	GGYRCC	4 cut(s)	323, 353, 917, 2527
AccB7I	CCANNNNNTGG	1 cut(s)	2459
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	2 cut(s)	363, 1107
AccII	CGCG	4 cut(s)	173, 200, 401, 1473
AccIII	TCCGGA	4 cut(s)	127, 626, 1997, 2152
AciI	CCGC	9 cut(s)	148, 155, 379, 412, 602, 605, 1473, 2180, 2999
AclWI	GGATC	8 cut(s)	115, 710, 723, 791, 804, 1750, 1808, 3001
AcsI	RAATTY	4 cut(s)	464, 550, 2370, 2422
AcuI	CTGAAG	2 cut(s)	1416, 1548
AcyI	GRCGYC	2 cut(s)	354, 1077
AdeI	CACNNNGTG	1 cut(s)	2950
AfaI	GTAC	9 cut(s)	6, 197, 930, 1269, 1530, 2022, 2043, 2449, 2765
AfeI	AGCGCT	1 cut(s)	2068
AfiI	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1805, 2459, 2656, 2732, 2886
AgsI	TTSAA	9 cut(s)	246, 1373, 1680, 1787, 1839, 1853, 1927, 2167, 2334
AhlI	ACTAGT	1 cut(s)	2938
AjnI	CCWGG	5 cut(s)	255, 318, 1518, 1827, 1908
AjuI	GAANNNNNNNTTGG	4 cut(s)	1530, 1562, 2446, 2478
AleI	CACNNNNGTG	1 cut(s)	435
Alw21I	GWGCWC	6 cut(s)	33, 273, 1089, 2677, 2879, 2946
Alw26I	GTCTC	5 cut(s)	902, 1416, 1438, 1999, 2955
Alw44I	GTGCAC	1 cut(s)	2942
AlwI	GGATC	8 cut(s)	115, 710, 723, 791, 804, 1750, 1808, 3001
AlwNI	CAGNNNCTG	1 cut(s)	944
Ama87I	CYCGRG	2 cut(s)	264, 1295
Aor13HI	TCCGGA	4 cut(s)	127, 626, 1997, 2152
Aor51HI	AGCGCT	1 cut(s)	2068
AoxI	GGCC	5 cut(s)	307, 1020, 1065, 1377, 1950
ApaLI	GTGCAC	1 cut(s)	2942
ApeKI	GCWGC	7 cut(s)	96, 1010, 1289, 1511, 1649, 1930, 2513
ApoI	RAATTY	4 cut(s)	464, 550, 2370, 2422
AseI	ATTAAT	1 cut(s)	2667
AspLEI	GCGC	5 cut(s)	175, 202, 356, 1473, 2069
AspS9I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2632, 2735
AsuC2I	CCSGG	2 cut(s)	476, 794
AsuHPI	GGTGA	7 cut(s)	50, 496, 959, 2424, 2791, 2851, 2863
AvaI	CYCGRG	2 cut(s)	264, 1295
AvaII	GGWCC	6 cut(s)	77, 253, 472, 670, 2632, 2735
BaeGI	GKGCMC	3 cut(s)	326, 922, 2946
BamHI	GGATCC	2 cut(s)	715, 796
BanI	GGYRCC	4 cut(s)	323, 353, 917, 2527
BanII	GRGCYC	3 cut(s)	33, 273, 2677
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
BauI	CACGAG	1 cut(s)	367
BbsI	GAAGAC	3 cut(s)	1080, 1160, 2165
Bbv12I	GWGCWC	6 cut(s)	33, 273, 1089, 2677, 2879, 2946
BbvCI	CCTCAGC	1 cut(s)	1386
BbvI	GCAGC	7 cut(s)	83, 997, 1301, 1498, 1636, 1942, 2500
BccI	CCATC	7 cut(s)	71, 98, 335, 1144, 1501, 2335, 2570
BceAI	ACGGC	4 cut(s)	142, 317, 322, 2900
BcgI	CGANNNNNNTGC	2 cut(s)	2183, 2217
BciT130I	CCWGG	5 cut(s)	257, 320, 1520, 1829, 1910
BciVI	GTATCC	3 cut(s)	1143, 1516, 2931
BclI	TGATCA	2 cut(s)	336, 2781
BcnI	CCSGG	2 cut(s)	476, 794
BcoDI	GTCTC	5 cut(s)	902, 1416, 1438, 1999, 2955
BcuI	ACTAGT	1 cut(s)	2938
BfaI	CTAG	3 cut(s)	1446, 1500, 2939
BfmI	CTRYAG	3 cut(s)	848, 2711, 2810
BfoI	RGCGCY	2 cut(s)	357, 2070
BfuAI	ACCTGC	2 cut(s)	2803, 2817
BfuI	GTATCC	3 cut(s)	1143, 1516, 2931
BglII	AGATCT	1 cut(s)	2336
BlpI	GCTNAGC	1 cut(s)	2070
BmcAI	AGTACT	2 cut(s)	1530, 2043
Bme1390I	CCNGG	7 cut(s)	257, 320, 476, 794, 1520, 1829, 1910
Bme18I	GGWCC	6 cut(s)	77, 253, 472, 670, 2632, 2735
BmeT110I	CYCGRG	2 cut(s)	264, 1295
BmgT120I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2632, 2735
BmrFI	CCNGG	7 cut(s)	257, 320, 476, 794, 1520, 1829, 1910
BmsI	GCATC	8 cut(s)	950, 969, 1106, 1374, 1402, 1717, 2173, 2572
BpiI	GAAGAC	3 cut(s)	1080, 1160, 2165
BplI	GAGNNNNNCTC	6 cut(s)	375, 407, 1027, 1059, 2123, 2155
BpmI	CTGGAG	4 cut(s)	167, 972, 1613, 1850
Bpu10I	CCTNAGC	3 cut(s)	1386, 2274, 2676
Bpu1102I	GCTNAGC	1 cut(s)	2070
BpuEI	CTTGAG	4 cut(s)	224, 1086, 1201, 1778
BpuMI	CCSGG	2 cut(s)	476, 794
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	2 cut(s)	354, 1077
BsaI	GGTCTC	2 cut(s)	902, 1999
BsaJI	CCNNGG	7 cut(s)	91, 237, 319, 1080, 2384, 2696, 2982
BsaWI	WCCGGW	4 cut(s)	127, 626, 1997, 2152
BsaXI	ACNNNNNCTCC	4 cut(s)	1979, 2009, 2147, 2177
Bsc4I	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1805, 2459, 2656, 2732, 2886
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	4 cut(s)	1275, 1558, 2754, 2862
Bse3DI	GCAATG	1 cut(s)	1983
Bse8I	GATNNNNATC	1 cut(s)	801
BseAI	TCCGGA	4 cut(s)	127, 626, 1997, 2152
BseBI	CCWGG	5 cut(s)	257, 320, 1520, 1829, 1910
BseDI	CCNNGG	7 cut(s)	91, 237, 319, 1080, 2384, 2696, 2982
BseGI	GGATG	4 cut(s)	484, 1987, 2089, 2188
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1805, 2459, 2656, 2732, 2886
BseMI	GCAATG	1 cut(s)	1983
BseMII	CTCAG	9 cut(s)	564, 1269, 1377, 1764, 2084, 2154, 2265, 2450, 2690
BseNI	ACTGG	4 cut(s)	1275, 1558, 2754, 2862
BseRI	GAGGAG	6 cut(s)	77, 80, 124, 1295, 1634, 2089
BseSI	GKGCMC	3 cut(s)	326, 922, 2946
BseXI	GCAGC	7 cut(s)	83, 997, 1301, 1498, 1636, 1942, 2500
BsgI	GTGCAG	1 cut(s)	1308
Bsh1236I	CGCG	4 cut(s)	173, 200, 401, 1473
Bsh1285I	CGRYCG	3 cut(s)	148, 379, 788
BshFI	GGCC	5 cut(s)	309, 1022, 1067, 1379, 1952
BshNI	GGYRCC	4 cut(s)	323, 353, 917, 2527
BsiEI	CGRYCG	3 cut(s)	148, 379, 788
BsiHKAI	GWGCWC	6 cut(s)	33, 273, 1089, 2677, 2879, 2946
BsiHKCI	CYCGRG	2 cut(s)	264, 1295
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	5 cut(s)	386, 458, 1822, 2672, 2748
BslI	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1805, 2459, 2656, 2732, 2886
BsmAI	GTCTC	5 cut(s)	902, 1416, 1438, 1999, 2955
BsmFI	GGGAC	5 cut(s)	386, 458, 1822, 2672, 2748
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	5 cut(s)	309, 1022, 1067, 1379, 1952
Bso31I	GGTCTC	2 cut(s)	902, 1999
BsoBI	CYCGRG	2 cut(s)	264, 1295
Bsp1286I	GDGCHC	8 cut(s)	33, 273, 326, 922, 1089, 2677, 2879, 2946
Bsp13I	TCCGGA	4 cut(s)	127, 626, 1997, 2152
Bsp1407I	TGTACA	1 cut(s)	928
Bsp1720I	GCTNAGC	1 cut(s)	2070
Bsp19I	CCATGG	1 cut(s)	1080
Bsp68I	TCGCGA	1 cut(s)	401
BspACI	CCGC	9 cut(s)	148, 155, 379, 412, 602, 605, 1473, 2180, 2999
BspANI	GGCC	5 cut(s)	309, 1022, 1067, 1379, 1952
BspCNI	CTCAG	9 cut(s)	565, 1270, 1378, 1765, 2083, 2153, 2266, 2449, 2689
BspEI	TCCGGA	4 cut(s)	127, 626, 1997, 2152
BspFNI	CGCG	4 cut(s)	173, 200, 401, 1473
BspMAI	CTGCAG	1 cut(s)	2814
BspMI	ACCTGC	2 cut(s)	2803, 2817
BspPI	GGATC	8 cut(s)	115, 710, 723, 791, 804, 1750, 1808, 3001
BspQI	GCTCTTC	1 cut(s)	2190
BspT107I	GGYRCC	4 cut(s)	323, 353, 917, 2527
BspTNI	GGTCTC	2 cut(s)	902, 1999
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	1983
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	928
BsrI	ACTGG	4 cut(s)	1275, 1558, 2754, 2862
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	7 cut(s)	91, 237, 319, 1080, 2384, 2696, 2982
BssNI	GRCGYC	2 cut(s)	354, 1077
BssSI	CACGAG	1 cut(s)	367
BssT1I	CCWWGG	3 cut(s)	237, 1080, 2696
Bst2BI	CACGAG	1 cut(s)	367
Bst2UI	CCWGG	5 cut(s)	257, 320, 1520, 1829, 1910
Bst6I	CTCTTC	5 cut(s)	526, 905, 1263, 1392, 2190
BstACI	GRCGYC	2 cut(s)	354, 1077
BstAUI	TGTACA	1 cut(s)	928
BstC8I	GCNNGC	6 cut(s)	1935, 1950, 1974, 2202, 2238, 2280
BstDSI	CCRYGG	2 cut(s)	1080, 2982
BstF5I	GGATG	4 cut(s)	484, 1987, 2089, 2188
BstFNI	CGCG	4 cut(s)	173, 200, 401, 1473
BstH2I	RGCGCY	2 cut(s)	357, 2070
BstHHI	GCGC	5 cut(s)	175, 202, 356, 1473, 2069
BstMAI	GTCTC	5 cut(s)	902, 1416, 1438, 1999, 2955
BstMCI	CGRYCG	3 cut(s)	148, 379, 788
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 353, 1019, 1180, 1568, 2883, 3007
BstNI	CCWGG	5 cut(s)	257, 320, 1520, 1829, 1910
BstNSI	RCATGY	3 cut(s)	1937, 2305, 2875
BstSCI	CCNGG	7 cut(s)	255, 318, 474, 792, 1518, 1827, 1908
BstSFI	CTRYAG	3 cut(s)	848, 2711, 2810
BstSLI	GKGCMC	3 cut(s)	326, 922, 2946
BstUI	CGCG	4 cut(s)	173, 200, 401, 1473
BstV1I	GCAGC	7 cut(s)	83, 997, 1301, 1498, 1636, 1942, 2500
BstV2I	GAAGAC	3 cut(s)	1080, 1160, 2165
BstX2I	RGATCY	4 cut(s)	107, 715, 796, 2336
BstYI	RGATCY	4 cut(s)	107, 715, 796, 2336
BsuI	GTATCC	3 cut(s)	1143, 1516, 2931
BsuRI	GGCC	5 cut(s)	309, 1022, 1067, 1379, 1952
BtgI	CCRYGG	2 cut(s)	1080, 2982
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	484, 1987, 2089, 2188
BtsI	GCAGTG	2 cut(s)	1380, 1483
BtsIMutI	CAGTG	8 cut(s)	16, 1380, 1483, 1572, 2282, 2556, 2761, 2869
BtuMI	TCGCGA	1 cut(s)	401
BveI	ACCTGC	2 cut(s)	2803, 2817
Cac8I	GCNNGC	6 cut(s)	1935, 1950, 1974, 2202, 2238, 2280
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	5 cut(s)	175, 202, 356, 1473, 2069
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2632, 2735
CpoI	CGGWCCG	1 cut(s)	77
CseI	GACGC	1 cut(s)	1085
CsiI	ACCWGGT	1 cut(s)	1908
Csp6I	GTAC	9 cut(s)	5, 196, 929, 1268, 1529, 2021, 2042, 2448, 2764
CspCI	CAANNNNNGTGG	2 cut(s)	2505, 2540
CspI	CGGWCCG	1 cut(s)	77
CviQI	GTAC	9 cut(s)	5, 196, 929, 1268, 1529, 2021, 2042, 2448, 2764
DinI	GGCGCC	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	2950
DrdI	GACNNNNNNGTC	2 cut(s)	1430, 2540
DseDI	GACNNNNNNGTC	2 cut(s)	1430, 2540
Eam1104I	CTCTTC	5 cut(s)	526, 905, 1263, 1392, 2190
EarI	CTCTTC	5 cut(s)	526, 905, 1263, 1392, 2190
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	3 cut(s)	31, 271, 2675
Eco130I	CCWWGG	3 cut(s)	237, 1080, 2696
Eco147I	AGGCCT	1 cut(s)	1022
Eco24I	GRGCYC	3 cut(s)	33, 273, 2677
Eco31I	GGTCTC	2 cut(s)	902, 1999
Eco47I	GGWCC	6 cut(s)	77, 253, 472, 670, 2632, 2735
Eco47III	AGCGCT	1 cut(s)	2068
Eco53kI	GAGCTC	3 cut(s)	31, 271, 2675
Eco57I	CTGAAG	2 cut(s)	1416, 1548
Eco88I	CYCGRG	2 cut(s)	264, 1295
EcoICRI	GAGCTC	3 cut(s)	31, 271, 2675
EcoO109I	RGGNCCY	5 cut(s)	253, 472, 1065, 2632, 2735
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	5 cut(s)	255, 318, 1518, 1827, 1908
EcoT14I	CCWWGG	3 cut(s)	237, 1080, 2696
EcoT38I	GRGCYC	3 cut(s)	33, 273, 2677
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	3 cut(s)	237, 1080, 2696
FalI	AAGNNNNNCTT	6 cut(s)	221, 253, 987, 1019, 1530, 1562
FaqI	GGGAC	5 cut(s)	386, 458, 1822, 2672, 2748
FauI	CCCGC	1 cut(s)	405
FauNDI	CATATG	2 cut(s)	748, 1032
FbaI	TGATCA	2 cut(s)	336, 2781
FblI	GTMKAC	2 cut(s)	363, 1107
FokI	GGATG	4 cut(s)	491, 1994, 2096, 2195
FriOI	GRGCYC	3 cut(s)	33, 273, 2677
FspBI	CTAG	3 cut(s)	1446, 1500, 2939
GlaI	GCGC	5 cut(s)	174, 201, 355, 1472, 2068
GsuI	CTGGAG	4 cut(s)	167, 972, 1613, 1850
HaeII	RGCGCY	2 cut(s)	357, 2070
HaeIII	GGCC	5 cut(s)	309, 1022, 1067, 1379, 1952
HgaI	GACGC	1 cut(s)	1085
HhaI	GCGC	5 cut(s)	175, 202, 356, 1473, 2069
Hin1I	GRCGYC	2 cut(s)	354, 1077
Hin6I	GCGC	5 cut(s)	173, 200, 354, 1471, 2067
HinP1I	GCGC	5 cut(s)	173, 200, 354, 1471, 2067
HincII	GTYRAC	2 cut(s)	1915, 2613
HindII	GTYRAC	2 cut(s)	1915, 2613
HindIII	AAGCTT	2 cut(s)	683, 2261
HphI	GGTGA	7 cut(s)	50, 496, 959, 2424, 2791, 2851, 2863
Hpy166II	GTNNAC	9 cut(s)	7, 364, 440, 670, 1108, 1915, 2450, 2613, 2944
Hpy8I	GTNNAC	9 cut(s)	7, 364, 440, 670, 1108, 1915, 2450, 2613, 2944
Hpy99I	CGWCG	4 cut(s)	52, 218, 437, 843
HpyCH4IV	ACGT	2 cut(s)	213, 2170
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 353, 1019, 1180, 1568, 2883, 3007
HpySE526I	ACGT	2 cut(s)	213, 2170
Hsp92I	GRCGYC	2 cut(s)	354, 1077
HspAI	GCGC	5 cut(s)	173, 200, 354, 1471, 2067
KasI	GGCGCC	1 cut(s)	353
KflI	GGGWCCC	1 cut(s)	472
Kpn2I	TCCGGA	4 cut(s)	127, 626, 1997, 2152
Ksp22I	TGATCA	2 cut(s)	336, 2781
LguI	GCTCTTC	1 cut(s)	2190
Lsp1109I	GCAGC	7 cut(s)	83, 997, 1301, 1498, 1636, 1942, 2500
LweI	GCATC	8 cut(s)	950, 969, 1106, 1374, 1402, 1717, 2173, 2572
MabI	ACCWGGT	1 cut(s)	1908
MaeI	CTAG	3 cut(s)	1446, 1500, 2939
MaeII	ACGT	2 cut(s)	213, 2170
MaeIII	GTNAC	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	150
MfeI	CAATTG	3 cut(s)	753, 1712, 1779
MflI	RGATCY	4 cut(s)	107, 715, 796, 2336
MhlI	GDGCHC	8 cut(s)	33, 273, 326, 922, 1089, 2677, 2879, 2946
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	7 cut(s)	125, 299, 1307, 1784, 2318, 2550, 2957
MmeI	TCCRAC	4 cut(s)	168, 693, 1399, 1886
MroI	TCCGGA	4 cut(s)	127, 626, 1997, 2152
MslI	CAYNNNNRTG	3 cut(s)	332, 435, 1325
MspA1I	CMGCKG	2 cut(s)	607, 2180
MspR9I	CCNGG	7 cut(s)	257, 320, 476, 794, 1520, 1829, 1910
MunI	CAATTG	3 cut(s)	753, 1712, 1779
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	5 cut(s)	257, 320, 1520, 1829, 1910
MvnI	CGCG	4 cut(s)	173, 200, 401, 1473
MwoI	GCNNNNNNNGC	7 cut(s)	147, 353, 1019, 1180, 1568, 2883, 3007
NarI	GGCGCC	1 cut(s)	354
NciI	CCSGG	2 cut(s)	476, 794
NcoI	CCATGG	1 cut(s)	1080
NdeI	CATATG	2 cut(s)	748, 1032
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	38
NruI	TCGCGA	1 cut(s)	401
NspI	RCATGY	3 cut(s)	1937, 2305, 2875
OliI	CACNNNNGTG	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	1937
PaeR7I	CTCGAG	1 cut(s)	1295
PceI	AGGCCT	1 cut(s)	1022
PciSI	GCTCTTC	1 cut(s)	2190
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 99, 719
PctI	GAATGC	1 cut(s)	889
PfeI	GAWTC	8 cut(s)	20, 68, 260, 387, 1202, 1274, 1442, 1724
Pfl23II	CGTACG	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	1910
PflMI	CCANNNNNTGG	1 cut(s)	2459
PfoI	TCCNGGA	5 cut(s)	255, 474, 792, 1518, 1827
PleI	GAGTC	7 cut(s)	125, 298, 1306, 1783, 2317, 2549, 2957
PluTI	GGCGCC	1 cut(s)	357
PpsI	GAGTC	7 cut(s)	125, 298, 1306, 1783, 2317, 2549, 2957
PpuMI	RGGWCCY	4 cut(s)	253, 472, 2632, 2735
PshBI	ATTAAT	1 cut(s)	2667
Psp124BI	GAGCTC	3 cut(s)	33, 273, 2677
Psp5II	RGGWCCY	4 cut(s)	253, 472, 2632, 2735
Psp6I	CCWGG	5 cut(s)	255, 318, 1518, 1827, 1908
PspGI	CCWGG	5 cut(s)	255, 318, 1518, 1827, 1908
PspLI	CGTACG	1 cut(s)	195
PspPI	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2632, 2735
PspPPI	RGGWCCY	4 cut(s)	253, 472, 2632, 2735
PspXI	VCTCGAGB	1 cut(s)	1295
PstI	CTGCAG	1 cut(s)	2814
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	4 cut(s)	107, 715, 796, 2336
PsyI	GACNNNGTC	1 cut(s)	1910
RruI	TCGCGA	1 cut(s)	401
RsaI	GTAC	9 cut(s)	6, 197, 930, 1269, 1530, 2022, 2043, 2449, 2765
RsaNI	GTAC	9 cut(s)	5, 196, 929, 1268, 1529, 2021, 2042, 2448, 2764
RseI	CAYNNNNRTG	3 cut(s)	332, 435, 1325
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SacI	GAGCTC	3 cut(s)	33, 273, 2677
SapI	GCTCTTC	1 cut(s)	2190
Sau96I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2632, 2735
SbfI	CCTGCAGG	1 cut(s)	2814
ScaI	AGTACT	2 cut(s)	1530, 2043
SchI	GAGTC	7 cut(s)	125, 299, 1307, 1784, 2318, 2550, 2957
ScrFI	CCNGG	7 cut(s)	257, 320, 476, 794, 1520, 1829, 1910
SdaI	CCTGCAGG	1 cut(s)	2814
SduI	GDGCHC	8 cut(s)	33, 273, 326, 922, 1089, 2677, 2879, 2946
SexAI	ACCWGGT	1 cut(s)	1908
SfaNI	GCATC	8 cut(s)	950, 969, 1106, 1374, 1402, 1717, 2173, 2572
SfcI	CTRYAG	3 cut(s)	848, 2711, 2810
SfoI	GGCGCC	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	1295
SinI	GGWCC	6 cut(s)	77, 253, 472, 670, 2632, 2735
SlaI	CTCGAG	1 cut(s)	1295
SmiMI	CAYNNNNRTG	3 cut(s)	332, 435, 1325
SmlI	CTYRAG	5 cut(s)	203, 1101, 1216, 1295, 1793
SmoI	CTYRAG	5 cut(s)	203, 1101, 1216, 1295, 1793
SpeI	ACTAGT	1 cut(s)	2938
SphI	GCATGC	1 cut(s)	1937
Sse8387I	CCTGCAGG	1 cut(s)	2814
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	9 cut(s)	148, 155, 379, 412, 602, 605, 1473, 2180, 2999
SspDI	GGCGCC	1 cut(s)	353
SspI	AATATT	1 cut(s)	1897
SspMI	CTAG	3 cut(s)	1446, 1500, 2939
SstI	GAGCTC	3 cut(s)	33, 273, 2677
StuI	AGGCCT	1 cut(s)	1022
StyD4I	CCNGG	7 cut(s)	255, 318, 474, 792, 1518, 1827, 1908
StyI	CCWWGG	3 cut(s)	237, 1080, 2696
TaiI	ACGT	2 cut(s)	216, 2173
TaqI	TCGA	8 cut(s)	27, 47, 57, 66, 293, 491, 1296, 2637
TaqII	GACCGA	1 cut(s)	774
TatI	WGTACW	4 cut(s)	928, 1267, 1528, 2041
TauI	GCSGC	3 cut(s)	607, 1476, 3001
TfiI	GAWTC	8 cut(s)	20, 68, 260, 387, 1202, 1274, 1442, 1724
TscAI	CASTG	8 cut(s)	16, 1387, 1483, 1572, 2289, 2563, 2761, 2869
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	7 cut(s)	96, 1010, 1289, 1511, 1649, 1930, 2513
Tsp45I	GTSAC	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	1251
TspRI	CASTG	8 cut(s)	16, 1387, 1483, 1572, 2289, 2563, 2761, 2869
Tth111I	GACNNNGTC	1 cut(s)	1910
Van91I	CCANNNNNTGG	1 cut(s)	2459
VneI	GTGCAC	1 cut(s)	2942
VpaK11BI	GGWCC	6 cut(s)	77, 253, 472, 670, 2632, 2735
VspI	ATTAAT	1 cut(s)	2667
XapI	RAATTY	4 cut(s)	464, 550, 2370, 2422
XceI	RCATGY	3 cut(s)	1937, 2305, 2875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1825
XhoI	CTCGAG	1 cut(s)	1295
XmiI	GTMKAC	2 cut(s)	363, 1107
XspI	CTAG	3 cut(s)	1446, 1500, 2939
ZrmI	AGTACT	2 cut(s)	1530, 2043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.