Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019613.1

Orthogroup ID

OG0009569

Physical Location & Seq

Genomic Coordinates Reverse (-)

2533 .. 3646

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019613.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 676 bp

ataccttactctattgcaaatttatcttaatccgaagagaacaaccaagaactttgagaagcggattacgaatttggtatcgccgcagaacataggaacaccaaaggttggttctgcaaatacagttaaaagtaaaggaggtcgtggagccaagaaaattgctgcaatagaggtggcagatgacataagagtcggtcaaagtggcactgacagtagcaggagtgatggagatgcagatgcagatgcagacgagtctggtgaggaaggagggtcagcaatcatgcttgatgaggttcttgatttgttgagcagaaggtgggacagaataaatggagctcaagctctcaaacttttgccaagggagactaaactacagaacatgcttccgtttatgggacctcttttgagaaaatccagtgaagcttacaggaacctttcagtgataaaaagtttaagacaaagcgataacctgcaggttaaagaagaactctacgaaaaaaggaaaggggtggtaaagatcacgagtgacagcatgtgctccctctgcagaaagaaaatagggacaagtgtttttgctgtgtatccgaatgggagtacaatagtgcattttgtttgcttcagagactcccagagtatgaaagccgtgggcagaggatcacccttaaagaagcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009506 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030054 GO:0030897 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032991 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061919 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0098876 GO:0099023 GO:1902774 GO:1990126

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

224

Amino Acids

24.65

Weight (kDa)

9.75

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36630 AT4G36630
fragaria_vesca	FvH4_1g13311
malus_domestica	MD02G1147600.v1.1 MD15G1261900.v1.1
prunus_persica	Prupe.7G154500_v2.0.a1
pyrus_communis	pycom02g11660 pycom15g22910
rosa_chinensis	RchiOBHm_Chr2g0101111 RchiOBHm_Chr2g0101581
rosa_laevigata	RLG00000017092
rosa_multiflora	Rmu_sc0006153.1_g000006 Rmu_sc0019613.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141170
rosa_rugosa	Rorug02G0097300 Rorug02G0100900
rosa_samantha	Rh2AG148200 Rh2BG153600 Rh2CG149800 Rh2CG153900 Rh2DG153900
rosa_wichuraiana	Rw2G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	189
Acc36I	ACCTGC	2 cut(s)	464, 478
AccB7I	CCANNNNNTGG	1 cut(s)	108
AciI	CCGC	2 cut(s)	62, 84
AclWI	GGATC	1 cut(s)	662
AcsI	RAATTY	2 cut(s)	19, 71
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	108, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	336, 342, 423
AluI	AGCT	3 cut(s)	336, 342, 423
Alw21I	GWGCWC	2 cut(s)	338, 540
Alw26I	GTCTC	2 cut(s)	357, 616
AlwI	GGATC	1 cut(s)	662
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	19, 71
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	270, 649
AvaII	GGWCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	521
Bbv12I	GWGCWC	2 cut(s)	338, 540
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	357, 616
BfmI	CTRYAG	3 cut(s)	372, 471, 545
BfuAI	ACCTGC	2 cut(s)	464, 478
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	2 cut(s)	84, 163
BlsI	GCNGC	2 cut(s)	85, 164
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	3 cut(s)	149, 397, 432
BmsI	GCATC	3 cut(s)	221, 227, 233
BpuEI	CTTGAG	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	357, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 393
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	357, 643
BseLI	CCNNNNNNNGG	2 cut(s)	108, 393
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	338, 540
BslFI	GGGAC	3 cut(s)	333, 409, 575
BslI	CCNNNNNNNGG	2 cut(s)	108, 393
BsmAI	GTCTC	2 cut(s)	357, 616
BsmFI	GGGAC	3 cut(s)	333, 409, 575
Bsp1286I	GDGCHC	2 cut(s)	338, 540
Bsp143I	GATC	2 cut(s)	517, 654
BspACI	CCGC	2 cut(s)	62, 84
BspLI	GGNNCC	3 cut(s)	149, 397, 432
BspMAI	CTGCAG	2 cut(s)	475, 549
BspMI	ACCTGC	2 cut(s)	464, 478
BspPI	GGATC	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	357, 643
BssMI	GATC	2 cut(s)	517, 654
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	125, 213
Bst6I	CTCTTC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	643
BstKTI	GATC	2 cut(s)	520, 657
BstMAI	GTCTC	2 cut(s)	357, 616
BstMBI	GATC	2 cut(s)	517, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNSI	RCATGY	2 cut(s)	383, 536
BstSFI	CTRYAG	3 cut(s)	372, 471, 545
BstV1I	GCAGC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	592
BtgI	CCRYGG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	205, 422, 445
BveI	ACCTGC	2 cut(s)	464, 478
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	595
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	3 cut(s)	281, 380, 533
CviJI	RGCY	5 cut(s)	150, 336, 342, 423, 642
CviKI_1	RGCY	5 cut(s)	150, 336, 342, 423, 642
CviQI	GTAC	1 cut(s)	595
DpnI	GATC	2 cut(s)	519, 656
DpnII	GATC	2 cut(s)	517, 654
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	3 cut(s)	284, 383, 536
FaiI	YATR	7 cut(s)	93, 186, 282, 381, 393, 534, 636
FaqI	GGGAC	3 cut(s)	333, 409, 575
FatI	CATG	3 cut(s)	280, 379, 532
Fnu4HI	GCNGC	2 cut(s)	84, 163
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	84, 163
GluI	GCNGC	2 cut(s)	84, 163
Hin1II	CATG	3 cut(s)	284, 383, 536
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	3 cut(s)	190, 252, 624
HphI	GGTGA	2 cut(s)	270, 649
Hpy188I	TCNGA	3 cut(s)	34, 586, 621
Hpy188III	TCNNGA	2 cut(s)	297, 521
HpyAV	CCTTC	2 cut(s)	258, 307
HpyCH4III	ACNGT	2 cut(s)	125, 213
HpyCH4V	TGCA	9 cut(s)	17, 117, 165, 234, 240, 246, 473, 547, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
Hsp92II	CATG	3 cut(s)	284, 383, 536
Kzo9I	GATC	2 cut(s)	517, 654
LmnI	GCTCC	3 cut(s)	147, 333, 543
LpnPI	CCDG	7 cut(s)	203, 241, 413, 428, 459, 483, 642
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	3 cut(s)	221, 227, 233
MaeIII	GTNAC	1 cut(s)	525
MalI	GATC	2 cut(s)	519, 656
MboI	GATC	2 cut(s)	517, 654
MboII	GAAGA	2 cut(s)	47, 495
MhlI	GDGCHC	2 cut(s)	338, 540
MluCI	AATT	3 cut(s)	19, 71, 157
MlyI	GAGTC	3 cut(s)	199, 261, 618
MnlI	CCTC	8 cut(s)	132, 164, 254, 261, 284, 409, 552, 645
MseI	TTAA	5 cut(s)	28, 127, 453, 478, 663
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	2 cut(s)	517, 654
NlaIII	CATG	3 cut(s)	284, 383, 536
NlaIV	GGNNCC	3 cut(s)	149, 397, 432
NmuCI	GTSAC	1 cut(s)	525
NspI	RCATGY	2 cut(s)	383, 536
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	85, 164
PleI	GAGTC	3 cut(s)	198, 260, 618
PpsI	GAGTC	3 cut(s)	198, 260, 618
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	149, 397, 432
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
PstI	CTGCAG	2 cut(s)	475, 549
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	5 cut(s)	28, 127, 453, 478, 663
SatI	GCNGC	2 cut(s)	84, 163
Sau3AI	GATC	2 cut(s)	517, 654
Sau96I	GGNCC	1 cut(s)	396
SbfI	CCTGCAGG	1 cut(s)	475
SchI	GAGTC	3 cut(s)	199, 261, 618
SdaI	CCTGCAGG	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	338, 540
SfaNI	GCATC	3 cut(s)	221, 227, 233
SfcI	CTRYAG	3 cut(s)	372, 471, 545
SinI	GGWCC	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse8387I	CCTGCAGG	1 cut(s)	475
Sse9I	AATT	3 cut(s)	19, 71, 157
SsiI	CCGC	2 cut(s)	62, 84
SstI	GAGCTC	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	125, 213
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	19, 71, 157
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	5 cut(s)	28, 127, 453, 478, 663
Tru9I	TTAA	5 cut(s)	28, 127, 453, 478, 663
TscAI	CASTG	3 cut(s)	212, 422, 445
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	1 cut(s)	651
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	3 cut(s)	212, 422, 445
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	19, 71
XceI	RCATGY	2 cut(s)	383, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.