Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009569

Physical Location & Seq

Genomic Coordinates Forward (+)

8581405 .. 8582252

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTGATTGATGATGGAACTGAGGAGGTTGTAAGGGAATCGGAGTGCCCTAATTGTAATAGAATGTTCTGTGCGCAATGCAAAGTTCCTTGGCATGGCTGCACGGAGTTCCAGAAATTGAATAAGGATGAGAGGGAAAAGGAGGATATCATGTTCATGAACATTGCACAGAATAATCAATGGAGAAGATGTCCAAACTGTAGGGTATATGTGGAAAAATGGACAGGTGCGGAAATTCGTTCTCCTACAAAAGTGGACAGCAAATTTCAAGTAAATATATTATCCCTGGGCAGAGCTTGCCCTGGGGTGGTGCAGGTGGTACAGACGCTATTCGTCGTGGCTTCTTCATTTTCGTGGCGGACATCAGACAGAAGTACCTGGGGGAACATCCTAACAACTGTTCGGGTCGCTGCCGTCGGTAAAGCTGCTAGTGAAAAATGGAAATCCTTGTCTCGTACTGAGAAAGAATCTTACGTGGCCATGTCACAGAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009506 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030054 GO:0030897 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032991 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061919 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0098876 GO:0099023 GO:1902774 GO:1990126

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

165

Amino Acids

18.96

Weight (kDa)

8.81

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36630 AT4G36630
fragaria_vesca	FvH4_1g13311
malus_domestica	MD02G1147600.v1.1 MD15G1261900.v1.1
prunus_persica	Prupe.7G154500_v2.0.a1
pyrus_communis	pycom02g11660 pycom15g22910
rosa_chinensis	RchiOBHm_Chr2g0101111 RchiOBHm_Chr2g0101581
rosa_laevigata	RLG00000017092
rosa_multiflora	Rmu_sc0006153.1_g000006 Rmu_sc0019613.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141170
rosa_rugosa	Rorug02G0097300 Rorug02G0100900
rosa_samantha	Rh2AG148200 Rh2BG153600 Rh2CG149800 Rh2CG153900 Rh2DG153900
rosa_wichuraiana	Rw2G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc16I	TGCGCA	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	304
AciI	CCGC	2 cut(s)	230, 358
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	234, 263
AfaI	GTAC	3 cut(s)	321, 376, 457
AfiI	CCNNNNNNNGG	2 cut(s)	95, 307
AgsI	TTSAA	2 cut(s)	121, 269
AjnI	CCWGG	3 cut(s)	285, 301, 377
AleI	CACNNNNGTG	1 cut(s)	490
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	296, 425
AluI	AGCT	2 cut(s)	296, 425
Alw26I	GTCTC	1 cut(s)	456
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	3 cut(s)	99, 410, 425
ApoI	RAATTY	2 cut(s)	234, 263
AspLEI	GCGC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	358, 391
BalI	TGGCCA	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	86, 397, 412
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	3 cut(s)	287, 303, 379
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	3 cut(s)	100, 411, 426
BlsI	GCNGC	3 cut(s)	101, 412, 427
Bme1390I	CCNGG	3 cut(s)	287, 303, 379
BmrFI	CCNGG	3 cut(s)	287, 303, 379
BsaAI	YACGTR	1 cut(s)	475
BsaJI	CCNNGG	6 cut(s)	89, 285, 286, 301, 302, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 307
Bse3DI	GCAATG	2 cut(s)	83, 162
BseBI	CCWGG	3 cut(s)	287, 303, 379
BseDI	CCNNGG	6 cut(s)	89, 285, 286, 301, 302, 378
BseGI	GGATG	2 cut(s)	133, 387
BseLI	CCNNNNNNNGG	2 cut(s)	95, 307
BseMI	GCAATG	2 cut(s)	83, 162
BseMII	CTCAG	2 cut(s)	12, 450
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	86, 397, 412
BsgI	GTGCAG	2 cut(s)	85, 332
BshFI	GGCC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	95, 307
BsmAI	GTCTC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	50
BspACI	CCGC	2 cut(s)	230, 358
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	13, 451
BspHI	TCATGA	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	83, 162
BssECI	CCNNGG	6 cut(s)	89, 285, 286, 301, 302, 378
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	287, 303, 379
Bst4CI	ACNGT	2 cut(s)	200, 400
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	21, 459
BstF5I	GGATG	2 cut(s)	133, 387
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	3 cut(s)	287, 303, 379
BstSCI	CCNGG	3 cut(s)	285, 301, 377
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	86, 397, 412
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	133, 387
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	320, 375, 456
CviAII	CATG	4 cut(s)	95, 151, 157, 481
CviJI	RGCY	5 cut(s)	99, 296, 341, 425, 479
CviKI_1	RGCY	5 cut(s)	99, 296, 341, 425, 479
CviQI	GTAC	3 cut(s)	320, 375, 456
DdeI	CTNAG	2 cut(s)	21, 459
EaeI	YGGCCR	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	148
EcoRII	CCWGG	3 cut(s)	285, 301, 377
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	4 cut(s)	98, 154, 160, 484
FaiI	YATR	7 cut(s)	96, 152, 158, 208, 210, 278, 482
FatI	CATG	4 cut(s)	94, 150, 156, 480
Fnu4HI	GCNGC	3 cut(s)	100, 411, 426
FokI	GGATG	2 cut(s)	140, 374
Fsp4HI	GCNGC	3 cut(s)	100, 411, 426
FspBI	CTAG	1 cut(s)	429
FspI	TGCGCA	1 cut(s)	75
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	100, 411, 426
HaeIII	GGCC	1 cut(s)	479
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	4 cut(s)	98, 154, 160, 484
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	38, 467
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	43, 367
Hpy188III	TCNNGA	2 cut(s)	112, 157
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	338, 419
HpyCH4III	ACNGT	2 cut(s)	200, 400
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	4 cut(s)	81, 102, 167, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	2 cut(s)	21, 459
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	98, 154, 160, 484
HspAI	GCGC	1 cut(s)	74
LpnPI	CCDG	9 cut(s)	125, 210, 272, 288, 299, 299, 315, 364, 391
Lsp1109I	GCAGC	3 cut(s)	86, 397, 412
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	483
MboII	GAAGA	2 cut(s)	198, 336
MhlI	GDGCHC	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	4 cut(s)	52, 116, 234, 263
MluNI	TGGCCA	1 cut(s)	479
MnlI	CCTC	4 cut(s)	16, 19, 126, 136
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
MslI	CAYNNNNRTG	3 cut(s)	155, 352, 490
Msp20I	TGGCCA	1 cut(s)	479
MspR9I	CCNGG	3 cut(s)	287, 303, 379
MvaI	CCWGG	3 cut(s)	287, 303, 379
MwoI	GCNNNNNNNGC	1 cut(s)	297
NlaIII	CATG	4 cut(s)	98, 154, 160, 484
NmuCI	GTSAC	1 cut(s)	483
NsbI	TGCGCA	1 cut(s)	75
OliI	CACNNNNGTG	1 cut(s)	490
PagI	TCATGA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	304
PasI	CCCWGGG	2 cut(s)	286, 302
PfeI	GAWTC	2 cut(s)	38, 467
PkrI	GCNGC	3 cut(s)	101, 412, 427
Ppu21I	YACGTR	1 cut(s)	475
Psp6I	CCWGG	3 cut(s)	285, 301, 377
PspGI	CCWGG	3 cut(s)	285, 301, 377
RsaI	GTAC	3 cut(s)	321, 376, 457
RsaNI	GTAC	3 cut(s)	320, 375, 456
RseI	CAYNNNNRTG	3 cut(s)	155, 352, 490
SatI	GCNGC	3 cut(s)	100, 411, 426
ScrFI	CCNGG	3 cut(s)	287, 303, 379
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	7 cut(s)	30, 229, 298, 318, 380, 427, 477
SfcI	CTRYAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	3 cut(s)	155, 352, 490
Sse9I	AATT	4 cut(s)	52, 116, 234, 263
SsiI	CCGC	2 cut(s)	230, 358
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	285, 301, 377
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	200, 400
TaiI	ACGT	1 cut(s)	477
TasI	AATT	4 cut(s)	52, 116, 234, 263
TfiI	GAWTC	2 cut(s)	38, 467
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	3 cut(s)	99, 410, 425
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	3 cut(s)	145, 173, 336
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	2 cut(s)	234, 263
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.