Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008476

Physical Location & Seq

Genomic Coordinates Reverse (-)

43255868 .. 43259950

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1358700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGAGAACACCGACGTGTTCTTAGGACTGCAGGACTTTCTGGAACGCATGCGTCAACCGTCGGCCGCCGATTTCGTCAAGTCTATAAAAAGCTTCATAGTGTCGTTTTCGAACAATGCTCCTGATCCGGAGAGGGACAGCGCCGCAGTGCAGGACTTCTTTGCCCGGATGGAAATCGATTTCAGGGCTCATCCACTTTGGGCTGGCTGTTCAGAGGAGGAGCTCGACAGCGCCGGCGAAGGACTGGAGAAGTATGTTATGACGAAGTTATTTCCTCGCGTATTTGCTTCACTTCCGGACGATGTGAAACTCGATGAGCAACTGTATGAGAAGATGGCTTTAGTACAACAGTTTATTCGGCCGGAAAATTTGGACATTAAGCCCACCTTTCAAAATGAGACTTCATGGCTGCTTGCACAAAAAGAACTGCAAAAGATCAATATGTACAAGGCACCGAGGGATAAGCTTGTGTGCATCCTTAATTGTTGCAAGGTTATTAATAACTTGCTCATGAAAGCTTCTGTTGCTTCCAATGAGAATCCCCCTGGAGCTGATGAATTTCTTCCTGTCCTAATTTATGTTACGTTAAAGGCAAACCCTCCACAACTGCACTTAAATTTATTGTATATACAAAGGTACAGGCGACAATCTCGATTAGTTGGTGAAGCATCCTATTTTTTCACAAACATGCTCTCCGTTGAATCCTTCATCTCAAATATTGACGCAAATGCCATTTCAATGGATGAATCTGAGTATGACAAGAACATGGAAACTGCTCGAGCACTTCTTTCTGGACTTTCAGCTGATCTGGACGGTCAGTATACTCAAAAAGGTCAATTTGCAGGATATGGAAATAGATCAGAGTCTATGGAAACCAGACATCAACATCCGAATGCCAACAAGGACCTAGCGGCACAATCCAGATCTTCTGAAACAAACTCCCGAGGGAAGAAGATACCCAATGAAAAAGATAACTCACCCTTTTCAAAGATTCCATCCCTTTCGGATTTGGAGAATAAGGGTGCAACGATCCTCGTGACCAATGATCAGGCGAACCAGGTTTTCCAGGAGTATCCATACTTGTTTGCGAATGTCGGTGACCTAACCATCAGTGATGTAGAAGACCTTCTTAATAATTACAAGCAACTTGCATTCAAATATGTTTGTCTTTCTAACGGGTTAGGCGTTACTGCTCCATCTTCTTACAATTCGCATACAGAGTTCCACCAGCATACTGAAACGGCAAAGCAACAGGAACTCTCTAGAGCTATAGAGCCGAATGATGAGACATCAAATGACACTGATACGACGGATGATGCTTTAAAGAAAGAGCCCCTTATTGATGATGAAAATTTGGAATCCAGATTGTCACAGGATCAAGAAGTTTCACCACAGAGTGGTACACATGAGGAGTACTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007049 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0017016 GO:0017048 GO:0019899 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0051020 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071840 GO:0090696 GO:0098772 GO:0099402 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VPS9

Protein Analysis

475

Amino Acids

53.56

Weight (kDa)

4.73

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5601	PF18151	27 - 91	2.9e-14	Domain of unknown function (DUF5601)
VPS9	PF02204	137 - 241	1.3e-30	Vacuolar sorting protein 9 (VPS9) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19770 AT3G19770 AT5G09320
fragaria_vesca	FvH4_5g38820 FvH4_5g38820
malus_domestica	MD00G1104300.v1.1 MD15G1358700.v1.1
prunus_persica	Prupe.1G506400_v2.0.a1 Prupe.1G506400_v2.0.a1
pyrus_communis	pycom08g14820 pycom15g32120
rosa_chinensis	RchiOBHm_Chr7g0240821
rosa_laevigata	RLG00000000622
rosa_multiflora	Rmu_sc0004821.1_g000014 Rmu_sc0010888.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219600
rosa_rugosa	Rorug07G0339300 Rorug07G0339300
rosa_samantha	Rh7AG493500 Rh7BG465500 Rh7CG512000 Rh7DG478700
rosa_wichuraiana	Rw7G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	1397
AccI	GTMKAC	1 cut(s)	821
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	2 cut(s)	127, 295
AciI	CCGC	3 cut(s)	66, 144, 911
AclWI	GGATC	3 cut(s)	119, 1024, 1383
AcoI	YGGCCR	2 cut(s)	63, 359
AcsI	RAATTY	4 cut(s)	367, 557, 616, 1351
AdeI	CACNNNGTG	1 cut(s)	1397
AfaI	GTAC	5 cut(s)	345, 446, 638, 1402, 1415
AfiI	CCNNNNNNNGG	1 cut(s)	1397
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	5 cut(s)	392, 701, 738, 987, 1156
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	3 cut(s)	544, 1056, 1065
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	7 cut(s)	93, 223, 466, 518, 551, 803, 1268
AluI	AGCT	7 cut(s)	93, 223, 466, 518, 551, 803, 1268
Alw21I	GWGCWC	2 cut(s)	225, 784
Alw26I	GTCTC	2 cut(s)	392, 1280
AlwI	GGATC	3 cut(s)	119, 1024, 1383
Ama87I	CYCGRG	2 cut(s)	777, 942
Aor13HI	TCCGGA	2 cut(s)	127, 295
AoxI	GGCC	2 cut(s)	63, 359
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	4 cut(s)	367, 557, 616, 1351
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	2 cut(s)	561, 1125
AspLEI	GCGC	2 cut(s)	143, 233
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	4 cut(s)	674, 969, 1109, 1380
AsuII	TTCGAA	1 cut(s)	110
AvaI	CYCGRG	2 cut(s)	777, 942
AvaII	GGWCC	1 cut(s)	904
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	3 cut(s)	190, 225, 1335
BarI	GAAGNNNNNNTAC	2 cut(s)	1110, 1142
BauI	CACGAG	1 cut(s)	1034
BbsI	GAAGAC	1 cut(s)	1128
Bbv12I	GWGCWC	2 cut(s)	225, 784
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	5 cut(s)	163, 328, 1003, 1115, 1204
BceAI	ACGGC	1 cut(s)	1257
BciT130I	CCWGG	3 cut(s)	546, 1058, 1067
BciVI	GTATCC	1 cut(s)	1083
BclI	TGATCA	1 cut(s)	1045
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	392, 1280
BfaI	CTAG	2 cut(s)	908, 1263
BfmI	CTRYAG	2 cut(s)	29, 1269
BfoI	RGCGCY	2 cut(s)	144, 234
BfuI	GTATCC	1 cut(s)	1083
BglII	AGATCT	1 cut(s)	923
BisI	GCNGC	4 cut(s)	66, 144, 410, 912
BlsI	GCNGC	4 cut(s)	67, 145, 411, 913
BmcAI	AGTACT	1 cut(s)	1415
Bme1390I	CCNGG	4 cut(s)	166, 546, 1058, 1067
Bme18I	GGWCC	1 cut(s)	904
BmeT110I	CYCGRG	2 cut(s)	777, 942
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	4 cut(s)	166, 546, 1058, 1067
BmsI	GCATC	3 cut(s)	483, 677, 1306
BpiI	GAAGAC	1 cut(s)	1128
BplI	GAGNNNNNCTC	1 cut(s)	1400
BpmI	CTGGAG	2 cut(s)	266, 567
Bpu14I	TTCGAA	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	455, 544, 943
BsaWI	WCCGGW	2 cut(s)	127, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	1397
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	173
BseAI	TCCGGA	2 cut(s)	127, 295
BseBI	CCWGG	3 cut(s)	546, 1058, 1067
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	455, 544, 943
BseGI	GGATG	8 cut(s)	174, 190, 474, 668, 748, 886, 995, 1318
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	1397
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	3 cut(s)	230, 233, 1424
BseX3I	CGGCCG	2 cut(s)	63, 359
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	2 cut(s)	170, 593
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	2 cut(s)	66, 362
BshFI	GGCC	2 cut(s)	65, 361
BshNI	GGYRCC	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	2 cut(s)	66, 362
BsiHKAI	GWGCWC	2 cut(s)	225, 784
BsiHKCI	CYCGRG	2 cut(s)	777, 942
BsiSI	CCGG	5 cut(s)	128, 166, 234, 296, 362
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	1397
BsmAI	GTCTC	2 cut(s)	392, 1280
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	2 cut(s)	898, 1151
BsnI	GGCC	2 cut(s)	65, 361
BsoBI	CYCGRG	2 cut(s)	777, 942
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	4 cut(s)	190, 225, 784, 1335
Bsp13I	TCCGGA	2 cut(s)	127, 295
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
BspACI	CCGC	3 cut(s)	66, 144, 911
BspANI	GGCC	2 cut(s)	65, 361
BspCNI	CTCAG	1 cut(s)	742
BspDI	ATCGAT	1 cut(s)	177
BspEI	TCCGGA	2 cut(s)	127, 295
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	119, 1024, 1383
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	455, 544, 943
BssMI	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
BssNAI	GTATAC	1 cut(s)	822
BssSI	CACGAG	1 cut(s)	1034
Bst1107I	GTATAC	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	1034
Bst2UI	CCWGG	3 cut(s)	546, 1058, 1067
Bst4CI	ACNGT	4 cut(s)	60, 324, 351, 815
BstAUI	TGTACA	1 cut(s)	444
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	4 cut(s)	50, 205, 235, 414
BstDEI	CTNAG	2 cut(s)	22, 750
BstEII	GGTNACC	1 cut(s)	1097
BstF5I	GGATG	8 cut(s)	174, 190, 474, 668, 748, 886, 995, 1318
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	2 cut(s)	144, 234
BstHHI	GCGC	2 cut(s)	143, 233
BstKTI	GATC	8 cut(s)	127, 438, 808, 860, 926, 1032, 1048, 1378
BstMAI	GTCTC	2 cut(s)	392, 1280
BstMBI	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
BstMCI	CGRYCG	2 cut(s)	66, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	3 cut(s)	546, 1058, 1067
BstNSI	RCATGY	2 cut(s)	52, 691
BstPI	GGTNACC	1 cut(s)	1097
BstSCI	CCNGG	4 cut(s)	164, 544, 1056, 1065
BstSFI	CTRYAG	2 cut(s)	29, 1269
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	1128
BstX2I	RGATCY	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	923
BstZ17I	GTATAC	1 cut(s)	822
BstZI	CGGCCG	2 cut(s)	63, 359
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	1083
BsuRI	GGCC	2 cut(s)	65, 361
BsuTUI	ATCGAT	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	8 cut(s)	174, 190, 474, 668, 748, 886, 995, 1318
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	153, 1117, 1299
Cac8I	GCNNGC	4 cut(s)	50, 205, 235, 414
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	2 cut(s)	143, 233
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	904
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	2 cut(s)	41, 731
CsiI	ACCWGGT	1 cut(s)	1056
Csp6I	GTAC	5 cut(s)	344, 445, 637, 1401, 1414
CviAII	CATG	6 cut(s)	49, 405, 511, 688, 766, 1406
CviQI	GTAC	5 cut(s)	344, 445, 637, 1401, 1414
DdeI	CTNAG	2 cut(s)	22, 750
DpnI	GATC	8 cut(s)	126, 437, 807, 859, 925, 1031, 1047, 1377
DpnII	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
DraI	TTTAAA	1 cut(s)	1323
DraIII	CACNNNGTG	1 cut(s)	1397
EaeI	YGGCCR	2 cut(s)	63, 359
EagI	CGGCCG	2 cut(s)	63, 359
Ecl136II	GAGCTC	1 cut(s)	223
EclXI	CGGCCG	2 cut(s)	63, 359
Eco24I	GRGCYC	3 cut(s)	190, 225, 1335
Eco47I	GGWCC	1 cut(s)	904
Eco52I	CGGCCG	2 cut(s)	63, 359
Eco53kI	GAGCTC	1 cut(s)	223
Eco88I	CYCGRG	2 cut(s)	777, 942
Eco91I	GGTNACC	1 cut(s)	1097
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	904
EcoO65I	GGTNACC	1 cut(s)	1097
EcoRII	CCWGG	3 cut(s)	544, 1056, 1065
EcoT38I	GRGCYC	3 cut(s)	190, 225, 1335
FaeI	CATG	6 cut(s)	52, 408, 514, 691, 769, 1409
FalI	AAGNNNNNCTT	6 cut(s)	371, 403, 1113, 1145, 1320, 1352
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	6 cut(s)	48, 404, 510, 687, 765, 1405
FbaI	TGATCA	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	4 cut(s)	66, 144, 410, 912
FokI	GGATG	8 cut(s)	177, 181, 461, 655, 755, 873, 982, 1325
FriOI	GRGCYC	3 cut(s)	190, 225, 1335
Fsp4HI	GCNGC	4 cut(s)	66, 144, 410, 912
FspBI	CTAG	2 cut(s)	908, 1263
GlaI	GCGC	2 cut(s)	142, 232
GluI	GCNGC	4 cut(s)	66, 144, 410, 912
GsuI	CTGGAG	2 cut(s)	266, 567
HaeII	RGCGCY	2 cut(s)	144, 234
HaeIII	GGCC	2 cut(s)	65, 361
HapII	CCGG	5 cut(s)	128, 166, 234, 296, 362
HgaI	GACGC	2 cut(s)	41, 731
HhaI	GCGC	2 cut(s)	143, 233
Hin1II	CATG	6 cut(s)	52, 408, 514, 691, 769, 1409
Hin6I	GCGC	2 cut(s)	141, 231
HinP1I	GCGC	2 cut(s)	141, 231
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	3 cut(s)	91, 464, 516
HinfI	GANTC	6 cut(s)	538, 701, 746, 863, 991, 1358
HpaII	CCGG	5 cut(s)	128, 166, 234, 296, 362
HphI	GGTGA	4 cut(s)	674, 969, 1109, 1380
Hpy166II	GTNNAC	3 cut(s)	56, 822, 1403
Hpy188I	TCNGA	6 cut(s)	214, 751, 862, 891, 931, 1006
Hpy8I	GTNNAC	3 cut(s)	56, 822, 1403
Hpy99I	CGWCG	3 cut(s)	17, 64, 1312
HpyAV	CCTTC	3 cut(s)	233, 715, 1136
HpyCH4III	ACNGT	4 cut(s)	60, 324, 351, 815
HpyCH4IV	ACGT	2 cut(s)	15, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	2 cut(s)	22, 750
HpySE526I	ACGT	2 cut(s)	15, 584
Hsp92II	CATG	6 cut(s)	52, 408, 514, 691, 769, 1409
HspAI	GCGC	2 cut(s)	141, 231
Kpn2I	TCCGGA	2 cut(s)	127, 295
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	1045
Kzo9I	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
LmnI	GCTCC	4 cut(s)	124, 220, 548, 1198
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	3 cut(s)	483, 677, 1306
MabI	ACCWGGT	1 cut(s)	1056
MaeI	CTAG	2 cut(s)	908, 1263
MaeII	ACGT	2 cut(s)	15, 584
MaeIII	GTNAC	5 cut(s)	580, 1036, 1097, 1186, 1368
MalI	GATC	8 cut(s)	126, 437, 807, 859, 925, 1031, 1047, 1377
MboI	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
MboII	GAAGA	7 cut(s)	343, 554, 918, 961, 964, 1133, 1191
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	4 cut(s)	190, 225, 784, 1335
MluCI	AATT	9 cut(s)	367, 481, 557, 573, 616, 836, 1135, 1207, 1351
MlyI	GAGTC	1 cut(s)	872
MnlI	CCTC	9 cut(s)	126, 208, 211, 285, 450, 609, 938, 1043, 1402
MreI	CGCCGGCG	1 cut(s)	233
MroI	TCCGGA	2 cut(s)	127, 295
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	2 cut(s)	561, 1125
MseI	TTAA	7 cut(s)	378, 480, 498, 587, 614, 1131, 1322
MslI	CAYNNNNRTG	4 cut(s)	14, 686, 737, 891
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	5 cut(s)	128, 166, 234, 296, 362
MspR9I	CCNGG	4 cut(s)	166, 546, 1058, 1067
Mva1269I	GAATGC	2 cut(s)	898, 1151
MvaI	CCWGG	3 cut(s)	546, 1058, 1067
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	524
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	6 cut(s)	52, 408, 514, 691, 769, 1409
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	3 cut(s)	1036, 1097, 1368
NspI	RCATGY	2 cut(s)	52, 691
NspV	TTCGAA	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	777
PagI	TCATGA	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	1182
PctI	GAATGC	2 cut(s)	898, 1151
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	2 cut(s)	561, 1125
PfeI	GAWTC	5 cut(s)	538, 701, 746, 991, 1358
PflMI	CCANNNNNTGG	1 cut(s)	1397
PfoI	TCCNGGA	1 cut(s)	1065
PkrI	GCNGC	4 cut(s)	67, 145, 411, 913
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PpuMI	RGGWCCY	1 cut(s)	904
PshBI	ATTAAT	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	904
Psp6I	CCWGG	3 cut(s)	544, 1056, 1065
PspEI	GGTNACC	1 cut(s)	1097
PspGI	CCWGG	3 cut(s)	544, 1056, 1065
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	904
PspPPI	RGGWCCY	1 cut(s)	904
PspXI	VCTCGAGB	1 cut(s)	777
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	5 cut(s)	345, 446, 638, 1402, 1415
RsaNI	GTAC	5 cut(s)	344, 445, 637, 1401, 1414
RseI	CAYNNNNRTG	4 cut(s)	14, 686, 737, 891
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	7 cut(s)	378, 480, 498, 587, 614, 1131, 1322
SatI	GCNGC	4 cut(s)	66, 144, 410, 912
Sau3AI	GATC	8 cut(s)	124, 435, 805, 857, 923, 1029, 1045, 1375
Sau96I	GGNCC	1 cut(s)	904
ScaI	AGTACT	1 cut(s)	1415
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	4 cut(s)	166, 546, 1058, 1067
SduI	GDGCHC	4 cut(s)	190, 225, 784, 1335
SexAI	ACCWGGT	1 cut(s)	1056
SfaNI	GCATC	3 cut(s)	483, 677, 1306
SfcI	CTRYAG	2 cut(s)	29, 1269
Sfr274I	CTCGAG	1 cut(s)	777
SfuI	TTCGAA	1 cut(s)	110
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	904
SlaI	CTCGAG	1 cut(s)	777
SmiMI	CAYNNNNRTG	4 cut(s)	14, 686, 737, 891
SmlI	CTYRAG	1 cut(s)	777
SmoI	CTYRAG	1 cut(s)	777
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	9 cut(s)	367, 481, 557, 573, 616, 836, 1135, 1207, 1351
SsiI	CCGC	3 cut(s)	66, 144, 911
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	2 cut(s)	908, 1263
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	4 cut(s)	164, 544, 1056, 1065
TaaI	ACNGT	4 cut(s)	60, 324, 351, 815
TaiI	ACGT	2 cut(s)	18, 587
TaqI	TCGA	6 cut(s)	110, 177, 225, 312, 652, 778
TasI	AATT	9 cut(s)	367, 481, 557, 573, 616, 836, 1135, 1207, 1351
TatI	WGTACW	3 cut(s)	343, 444, 1413
TauI	GCSGC	3 cut(s)	68, 146, 914
TfiI	GAWTC	5 cut(s)	538, 701, 746, 991, 1358
Tru1I	TTAA	7 cut(s)	378, 480, 498, 587, 614, 1131, 1322
Tru9I	TTAA	7 cut(s)	378, 480, 498, 587, 614, 1131, 1322
TscAI	CASTG	3 cut(s)	153, 1117, 1306
TseFI	GTSAC	3 cut(s)	1036, 1097, 1368
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	3 cut(s)	1036, 1097, 1368
TspDTI	ATGAA	8 cut(s)	85, 393, 527, 570, 697, 759, 978, 1362
TspGWI	ACGGA	2 cut(s)	685, 1325
TspRI	CASTG	3 cut(s)	153, 1117, 1306
Van91I	CCANNNNNTGG	1 cut(s)	1397
VpaK11BI	GGWCC	1 cut(s)	904
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	4 cut(s)	367, 557, 616, 1351
XbaI	TCTAGA	1 cut(s)	1262
XceI	RCATGY	2 cut(s)	52, 691
XhoI	CTCGAG	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	821
XmnI	GAANNNNTTC	2 cut(s)	561, 1125
XspI	CTAG	2 cut(s)	908, 1263
ZrmI	AGTACT	1 cut(s)	1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.