Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

37348819 .. 37351874

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAACTCAAGCTGGAGGAGTTAAGATTACATGTATTTAACTTAGAACGTGCGATGCTTGAAATATTGAATGATGATTGCATTGAGGAAGTTGTTTCTGAGGTTGTGGGAATTGTGAGTTTAAAGGCCAATAAGACTCATAACCTGTTGAGTCAAACCGTTGTTACAACCTTTGTGGAGGAAATGGATGAGGAGTTGCTTGGTGAACATGGGAGAAGCAGTCAAGACCCACTAAAAAAATTGACCAAGTCACCAGTGCTGGATGGCTATGCTGATGAGGGACCCCATGAGGAACTCATACATGAGGAGCTCAAACCTGACCCTGTGATGAGGGTTAAACAGCAGCCACAAAAGACTCTTCGTTCTCGGAAGCAACAAAGGAGTAAACCCAAAGCCCTAATTTTCTCAATAAGCGGTCTTATCACACTTGAGAATGCACATCTCATGAAATTTTTATTTAGGAAGAATGGCATTGGAGAAGACAAGTGGAGTGAAGTAGTAGCTAGTTATGGTGACTACGCCGTTACTAGAAAGGAATTTCAGTGTCTCTCTCCAGCAACTCCACTATCTTGCAAGGTCATAAACATATCTACGGCGTATTTGAATGAGCCAGAGTCAGAACATTGGTTTCTCCCTTCCTTTTTTGGGGAACAAGCAAGGGTAAAAGATGAACCATGTAGCTATGCTAAGTGGCTCACATCAACCATTGAGATATGCGGTCTTAAGAGGTTTCATCGCCATCTCCAACAATGCTCCAAGATATTCATCCCCTTGCATGACAATATGGAAGAGCACTGGTTTCTGTTGGTCATGCACCTCCCTGAAAAAAATGCAGAGGTGCTGAATAGCTTCCTTGATGCAAGGTCACGTGAGAGGGGAATGGATCATGCAAGAGACGTGTTTCATTCGGAGGACCAGCGTACTCGATTGGCACTTGAAATTGTTCTTCATCCAAGGAATGAACACCGTACTGTCGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

327

Amino Acids

37.94

Weight (kDa)

5.91

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	414, 717
AclWI	GGATC	1 cut(s)	891
AcsI	RAATTY	2 cut(s)	449, 536
AcvI	CACGTG	1 cut(s)	869
AfaI	GTAC	2 cut(s)	922, 970
AfiI	CCNNNNNNNGG	1 cut(s)	645
AflII	CTTAAG	1 cut(s)	722
AflIII	ACRYGT	2 cut(s)	31, 897
AgsI	TTSAA	4 cut(s)	62, 70, 604, 938
AjiI	CACGTC	1 cut(s)	898
AluBI	AGCT	5 cut(s)	13, 310, 503, 681, 849
AluI	AGCT	5 cut(s)	13, 310, 503, 681, 849
Alw21I	GWGCWC	2 cut(s)	312, 795
Alw26I	GTCTC	2 cut(s)	551, 888
AlwI	GGATC	1 cut(s)	891
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	449, 536
Asp700I	GAANNNNTTC	2 cut(s)	848, 942
AspS9I	GGNCC	2 cut(s)	281, 913
AsuHPI	GGTGA	3 cut(s)	215, 243, 524
AvaII	GGWCC	2 cut(s)	281, 913
BanII	GRGCYC	1 cut(s)	312
BbrPI	CACGTG	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	312, 795
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	257, 747
BceAI	ACGGC	2 cut(s)	506, 609
BcoDI	GTCTC	2 cut(s)	551, 888
BfaI	CTAG	2 cut(s)	504, 528
BfrI	CTTAAG	1 cut(s)	722
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	281, 913
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	2 cut(s)	281, 913
BmiI	GGNNCC	2 cut(s)	282, 283
BmsI	GCATC	2 cut(s)	45, 847
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	2 cut(s)	35, 537
BpuEI	CTTGAG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	869
BsaBI	GATNNNNATC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse1I	ACTGG	2 cut(s)	254, 800
Bse8I	GATNNNNATC	1 cut(s)	764
BseDI	CCNNGG	1 cut(s)	953
BseGI	GGATG	4 cut(s)	193, 268, 765, 949
BseJI	GATNNNNATC	1 cut(s)	764
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	254, 800
BseRI	GAGGAG	3 cut(s)	32, 206, 320
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	312, 795
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	2 cut(s)	551, 888
BsmBI	CGTCTC	1 cut(s)	888
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	312, 795
Bsp143I	GATC	1 cut(s)	883
BspACI	CCGC	2 cut(s)	414, 717
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	282, 283
BspPI	GGATC	1 cut(s)	891
BspQI	GCTCTTC	1 cut(s)	783
BspTI	CTTAAG	1 cut(s)	722
BsrI	ACTGG	2 cut(s)	254, 800
BssECI	CCNNGG	1 cut(s)	953
BssMI	GATC	1 cut(s)	883
BssT1I	CCWWGG	1 cut(s)	953
Bst4CI	ACNGT	3 cut(s)	160, 968, 973
Bst6I	CTCTTC	2 cut(s)	363, 783
BstAFI	CTTAAG	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	869
BstDEI	CTNAG	3 cut(s)	43, 99, 687
BstF5I	GGATG	4 cut(s)	193, 268, 765, 949
BstKTI	GATC	1 cut(s)	886
BstMAI	GTCTC	2 cut(s)	551, 888
BstMBI	GATC	1 cut(s)	883
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	128
BtgZI	GCGATG	2 cut(s)	68, 719
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	4 cut(s)	193, 268, 765, 949
BtsIMutI	CAGTG	3 cut(s)	261, 548, 793
CciI	TCATGA	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	281, 913
Csp6I	GTAC	2 cut(s)	921, 969
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	9 cut(s)	32, 209, 287, 302, 445, 675, 776, 811, 887
CviQI	GTAC	2 cut(s)	921, 969
DdeI	CTNAG	3 cut(s)	43, 99, 687
DpnI	GATC	1 cut(s)	885
DpnII	GATC	1 cut(s)	883
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	363, 783
EarI	CTCTTC	2 cut(s)	363, 783
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	953
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	281, 913
Eco53kI	GAGCTC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	869
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	953
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	953
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	9 cut(s)	35, 212, 290, 305, 448, 678, 779, 814, 890
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	9 cut(s)	31, 208, 286, 301, 444, 674, 775, 810, 886
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	4 cut(s)	200, 275, 752, 936
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	2 cut(s)	504, 528
GluI	GCNGC	1 cut(s)	344
GsuI	CTGGAG	2 cut(s)	35, 537
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	9 cut(s)	35, 212, 290, 305, 448, 678, 779, 814, 890
HinfI	GANTC	4 cut(s)	136, 151, 355, 614
HphI	GGTGA	3 cut(s)	215, 243, 524
Hpy166II	GTNNAC	2 cut(s)	206, 386
Hpy188I	TCNGA	4 cut(s)	100, 369, 619, 910
Hpy188III	TCNNGA	2 cut(s)	224, 445
Hpy8I	GTNNAC	2 cut(s)	206, 386
HpyAV	CCTTC	1 cut(s)	645
HpyCH4III	ACNGT	3 cut(s)	160, 968, 973
HpyCH4IV	ACGT	3 cut(s)	49, 868, 897
HpyCH4V	TGCA	8 cut(s)	81, 437, 573, 775, 814, 833, 860, 890
HpyF3I	CTNAG	3 cut(s)	43, 99, 687
HpySE526I	ACGT	3 cut(s)	49, 868, 897
Hsp92II	CATG	9 cut(s)	35, 212, 290, 305, 448, 678, 779, 814, 890
KflI	GGGWCCC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	883
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	2 cut(s)	307, 758
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	45, 847
MaeI	CTAG	2 cut(s)	504, 528
MaeII	ACGT	3 cut(s)	49, 868, 897
MaeIII	GTNAC	5 cut(s)	163, 249, 512, 523, 864
MalI	GATC	1 cut(s)	885
MboI	GATC	1 cut(s)	883
MboII	GAAGA	5 cut(s)	350, 475, 491, 800, 938
MhlI	GDGCHC	2 cut(s)	312, 795
MluCI	AATT	6 cut(s)	111, 239, 399, 449, 536, 939
MlyI	GAGTC	4 cut(s)	130, 160, 349, 623
MmeI	TCCRAC	1 cut(s)	769
MroXI	GAANNNNTTC	2 cut(s)	848, 942
MseI	TTAA	5 cut(s)	23, 39, 122, 336, 723
MspCI	CTTAAG	1 cut(s)	722
Mva1269I	GAATGC	1 cut(s)	439
NdeII	GATC	1 cut(s)	883
NlaIII	CATG	9 cut(s)	35, 212, 290, 305, 448, 678, 779, 814, 890
NlaIV	GGNNCC	2 cut(s)	282, 283
NmuCI	GTSAC	3 cut(s)	249, 512, 864
NspI	RCATGY	1 cut(s)	35
PagI	TCATGA	1 cut(s)	444
PciI	ACATGT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	783
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	2 cut(s)	848, 942
PflFI	GACNNNGTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	345
PleI	GAGTC	4 cut(s)	130, 159, 349, 622
PmaCI	CACGTG	1 cut(s)	869
PmlI	CACGTG	1 cut(s)	869
PpsI	GAGTC	4 cut(s)	130, 159, 349, 622
Ppu21I	YACGTR	1 cut(s)	869
PpuMI	RGGWCCY	1 cut(s)	281
PscI	ACATGT	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	282, 283
PspPI	GGNCC	2 cut(s)	281, 913
PspPPI	RGGWCCY	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	247
RsaI	GTAC	2 cut(s)	922, 970
RsaNI	GTAC	2 cut(s)	921, 969
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	5 cut(s)	23, 39, 122, 336, 723
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	883
Sau96I	GGNCC	2 cut(s)	281, 913
SchI	GAGTC	4 cut(s)	130, 160, 349, 623
SduI	GDGCHC	2 cut(s)	312, 795
SfaNI	GCATC	2 cut(s)	45, 847
SinI	GGWCC	2 cut(s)	281, 913
SmlI	CTYRAG	3 cut(s)	8, 428, 722
SmoI	CTYRAG	3 cut(s)	8, 428, 722
Sse9I	AATT	6 cut(s)	111, 239, 399, 449, 536, 939
SsiI	CCGC	2 cut(s)	414, 717
SspI	AATATT	2 cut(s)	66, 980
SspMI	CTAG	2 cut(s)	504, 528
SstI	GAGCTC	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	953
TaaI	ACNGT	3 cut(s)	160, 968, 973
TaiI	ACGT	3 cut(s)	52, 871, 900
TaqI	TCGA	2 cut(s)	925, 975
TasI	AATT	6 cut(s)	111, 239, 399, 449, 536, 939
Tru1I	TTAA	5 cut(s)	23, 39, 122, 336, 723
Tru9I	TTAA	5 cut(s)	23, 39, 122, 336, 723
TscAI	CASTG	3 cut(s)	261, 548, 800
TseFI	GTSAC	3 cut(s)	249, 512, 864
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	3 cut(s)	249, 512, 864
TspDTI	ATGAA	7 cut(s)	461, 684, 722, 754, 893, 938, 975
TspRI	CASTG	3 cut(s)	261, 548, 800
Tth111I	GACNNNGTC	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	281, 913
XapI	RAATTY	2 cut(s)	449, 536
XceI	RCATGY	1 cut(s)	35
XmnI	GAANNNNTTC	2 cut(s)	848, 942
XspI	CTAG	2 cut(s)	504, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.