Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

14254025 .. 14257409

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAGAGCCGAAGCTCCAAGAAGATCTCCGCCACATGGATTCCCATTTTCTGCATCCCCGCTTTCCTTCTCGGCATGCTCATCACCGGCAGAATGTGGGCAGCACCTGAAACCAACGGTCAGCTAATTTCGACTCGACGCCAAGAGCAAGAGCTTCAAATCGTCTCGGAAGATTGCGCAACTAAGAAGAAGCATGGACAAGATAAGAATGTGATGGACGAAATCTACAGAACTCATGAATCAATTCAATCTCTAGACAAGCAGATGGCGTCGATTCAGATGGAATTGGCGGCAGCTCGGAGTTCGCAGGAGATGGGGAACTCCGGTGGCTCCACTGCCAACTCGCAATTGTCTAAGGCCAATTCAACTAGAAAGAAAGCATTTATTGTTATTGGAATTAACACTGCTTTTAGTAGTAGGAGGAGGCGAGATTCAGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTGCAGTTGGAGCGCGAGAAAGGGATAGTTATCCGATTTATGATTGGCCACAGTGCAACATCCAGCAGCATTTTGGATCGAGCCATTGATTCAGAAGATGCTCAACATAATGATTTCCTCAGGCTGGAACACGTTGAAGGCTATCATGAATTGTCTGCCAAAACGAAAATTTTCTTCACTACTGCAGTTGCACAATGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTAGGTATGCTAGGTACTACTCTTGCCCGTCACCGTTCAAAACCAAGAGTCTACATTGGGTGTATGAAATCTGGACCTGTTCTTGCCCAAAAGAATGTGAAGTACCATGAACCAGAGTATTGGAAGTTTGGAGAGGAGGGAAACAAGTACTTCCGGCATGCAACTGGACAGATTTATGCAATTTCAAGGGATCTTGCTACATACGTCTCCATTAACCAGCCCATATTGCATAAGTATGCCAATGAAGATGTGTCACTTGGTTCGTGGTTTATTGGTCTTGAAGTCGAACACATTGATGAACGCAATATGTGCTGTGGGACTCCACCAGATTGTGAGTGGAAGGCACAGGCAGGTAATGTGTGTATTGCATCATTTGATTGGAGCTGCAGCGGTATCTGCAAGTCGGTGGAAAGGATTAAATCTGTTCATGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGAGTTCGCTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

397

Amino Acids

44.62

Weight (kDa)

7.98

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	178
Acc36I	ACCTGC	1 cut(s)	1055
AccI	GTMKAC	1 cut(s)	765
AccII	CGCG	1 cut(s)	486
AciI	CCGC	4 cut(s)	30, 60, 290, 1104
AclWI	GGATC	2 cut(s)	555, 912
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	139, 269
AfaI	GTAC	4 cut(s)	705, 730, 818, 863
AfiI	CCNNNNNNNGG	2 cut(s)	36, 595
AflIII	ACRYGT	2 cut(s)	601, 706
AgsI	TTSAA	7 cut(s)	158, 248, 366, 608, 753, 900, 995
AluBI	AGCT	7 cut(s)	15, 124, 154, 296, 469, 1098, 1169
AluI	AGCT	7 cut(s)	15, 124, 154, 296, 469, 1098, 1169
Alw26I	GTCTC	3 cut(s)	169, 437, 925
AlwI	GGATC	2 cut(s)	555, 912
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	357, 517
ApeKI	GCWGC	6 cut(s)	101, 293, 537, 1098, 1101, 1166
ApoI	RAATTY	1 cut(s)	639
Asp700I	GAANNNNTTC	2 cut(s)	243, 641
AspLEI	GCGC	2 cut(s)	179, 486
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	3 cut(s)	76, 737, 1166
AvaII	GGWCC	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	519
BbvI	GCAGC	6 cut(s)	113, 305, 549, 1085, 1113, 1178
BccI	CCATC	4 cut(s)	208, 259, 274, 307
BcoDI	GTCTC	3 cut(s)	169, 437, 925
BfaI	CTAG	3 cut(s)	254, 369, 725
BfmI	CTRYAG	4 cut(s)	226, 473, 654, 1099
BfuAI	ACCTGC	1 cut(s)	1055
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	7 cut(s)	102, 291, 294, 538, 1099, 1102, 1167
BlsI	GCNGC	7 cut(s)	103, 292, 295, 539, 1100, 1103, 1168
BmcAI	AGTACT	1 cut(s)	863
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	6 cut(s)	63, 441, 559, 661, 1091, 1153
BpuEI	CTTGAG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	500
BsaHI	GRCGYC	2 cut(s)	139, 269
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 595
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	883
Bse21I	CCTNAGG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	500
BseGI	GGATG	6 cut(s)	54, 456, 530, 676, 700, 1168
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	36, 595
BseMII	CTCAG	1 cut(s)	604
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	2 cut(s)	436, 863
BseXI	GCAGC	6 cut(s)	113, 305, 549, 1085, 1113, 1178
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	359, 519
BsiSI	CCGG	3 cut(s)	87, 324, 868
BslFI	GGGAC	1 cut(s)	1045
BslI	CCNNNNNNNGG	2 cut(s)	36, 595
BsmAI	GTCTC	3 cut(s)	169, 437, 925
BsmBI	CGTCTC	2 cut(s)	169, 925
BsmFI	GGGAC	1 cut(s)	1045
BsnI	GGCC	2 cut(s)	359, 519
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	3 cut(s)	24, 547, 904
BspACI	CCGC	4 cut(s)	30, 60, 290, 1104
BspANI	GGCC	2 cut(s)	359, 519
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	3 cut(s)	235, 616, 1141
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	3 cut(s)	477, 658, 1103
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	2 cut(s)	555, 912
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	883
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	3 cut(s)	24, 547, 904
BssNI	GRCGYC	2 cut(s)	139, 269
Bst4CI	ACNGT	3 cut(s)	119, 524, 749
BstACI	GRCGYC	2 cut(s)	139, 269
BstAPI	GCANNNNNTGC	1 cut(s)	1023
BstAUI	TGTACA	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	77, 873
BstDEI	CTNAG	3 cut(s)	183, 354, 590
BstF5I	GGATG	6 cut(s)	54, 456, 530, 676, 700, 1168
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	179, 486
BstKTI	GATC	3 cut(s)	27, 550, 907
BstMAI	GTCTC	3 cut(s)	169, 437, 925
BstMBI	GATC	3 cut(s)	24, 547, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	481, 940, 1023, 1110
BstNSI	RCATGY	3 cut(s)	79, 710, 875
BstSFI	CTRYAG	4 cut(s)	226, 473, 654, 1099
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	6 cut(s)	113, 305, 549, 1085, 1113, 1178
BstX2I	RGATCY	2 cut(s)	24, 904
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	2 cut(s)	24, 904
Bsu36I	CCTNAGG	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	359, 519
BtsCI	GGATG	6 cut(s)	54, 456, 530, 676, 700, 1168
BtsI	GCAGTG	2 cut(s)	333, 402
BtsIMutI	CAGTG	3 cut(s)	333, 402, 529
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	2 cut(s)	77, 873
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	3 cut(s)	235, 616, 1141
CfoI	GCGC	2 cut(s)	179, 486
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	2 cut(s)	147, 258
Csp6I	GTAC	4 cut(s)	704, 729, 817, 862
CviAII	CATG	9 cut(s)	36, 76, 194, 236, 617, 707, 821, 872, 1142
CviQI	GTAC	4 cut(s)	704, 729, 817, 862
DdeI	CTNAG	3 cut(s)	183, 354, 590
DpnI	GATC	3 cut(s)	26, 549, 906
DpnII	GATC	3 cut(s)	24, 547, 904
EaeI	YGGCCR	1 cut(s)	517
EciI	GGCGGA	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	788
Eco81I	CCTNAGG	1 cut(s)	590
Esp3I	CGTCTC	2 cut(s)	169, 925
FaeI	CATG	9 cut(s)	39, 79, 197, 239, 620, 710, 824, 875, 1145
FaqI	GGGAC	1 cut(s)	1045
FatI	CATG	9 cut(s)	35, 75, 193, 235, 616, 706, 820, 871, 1141
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	7 cut(s)	102, 291, 294, 538, 1099, 1102, 1167
FokI	GGATG	6 cut(s)	41, 463, 517, 683, 707, 1175
Fsp4HI	GCNGC	7 cut(s)	102, 291, 294, 538, 1099, 1102, 1167
FspBI	CTAG	3 cut(s)	254, 369, 725
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	2 cut(s)	178, 485
GluI	GCNGC	7 cut(s)	102, 291, 294, 538, 1099, 1102, 1167
HaeIII	GGCC	2 cut(s)	359, 519
HapII	CCGG	3 cut(s)	87, 324, 868
HgaI	GACGC	2 cut(s)	147, 258
HhaI	GCGC	2 cut(s)	179, 486
Hin1I	GRCGYC	2 cut(s)	139, 269
Hin1II	CATG	9 cut(s)	39, 79, 197, 239, 620, 710, 824, 875, 1145
Hin6I	GCGC	2 cut(s)	177, 484
HinP1I	GCGC	2 cut(s)	177, 484
HinfI	GANTC	8 cut(s)	40, 133, 239, 274, 431, 560, 762, 1033
HpaII	CCGG	3 cut(s)	87, 324, 868
HphI	GGTGA	3 cut(s)	76, 737, 1166
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	5 cut(s)	169, 279, 300, 506, 565
Hpy188III	TCNNGA	6 cut(s)	236, 254, 617, 786, 992, 1142
Hpy8I	GTNNAC	1 cut(s)	766
Hpy99I	CGWCG	2 cut(s)	141, 274
HpyAV	CCTTC	4 cut(s)	77, 602, 1048, 1151
HpyCH4III	ACNGT	3 cut(s)	119, 524, 749
HpyCH4IV	ACGT	2 cut(s)	603, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	481, 940, 1023, 1110
HpyF3I	CTNAG	3 cut(s)	183, 354, 590
HpySE526I	ACGT	2 cut(s)	603, 918
Hsp92I	GRCGYC	2 cut(s)	139, 269
Hsp92II	CATG	9 cut(s)	39, 79, 197, 239, 620, 710, 824, 875, 1145
HspAI	GCGC	2 cut(s)	177, 484
Kzo9I	GATC	3 cut(s)	24, 547, 904
LmnI	GCTCC	4 cut(s)	20, 335, 481, 1095
Lsp1109I	GCAGC	6 cut(s)	113, 305, 549, 1085, 1113, 1178
LweI	GCATC	6 cut(s)	63, 441, 559, 661, 1091, 1153
MaeI	CTAG	3 cut(s)	254, 369, 725
MaeII	ACGT	2 cut(s)	603, 918
MaeIII	GTNAC	2 cut(s)	743, 966
MalI	GATC	3 cut(s)	26, 549, 906
MboI	GATC	3 cut(s)	24, 547, 904
MboII	GAAGA	7 cut(s)	16, 34, 182, 199, 578, 637, 971
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	2 cut(s)	24, 904
MlsI	TGGCCA	1 cut(s)	519
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	3 cut(s)	127, 771, 1027
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	6 cut(s)	414, 417, 465, 599, 841, 844
Mox20I	TGGCCA	1 cut(s)	519
MroXI	GAANNNNTTC	2 cut(s)	243, 641
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	3 cut(s)	399, 927, 1131
MslI	CAYNNNNRTG	2 cut(s)	948, 1008
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	1104, 1169
MspI	CCGG	3 cut(s)	87, 324, 868
MunI	CAATTG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	481, 940, 1023, 1110
NdeII	GATC	3 cut(s)	24, 547, 904
NlaIII	CATG	9 cut(s)	39, 79, 197, 239, 620, 710, 824, 875, 1145
NlaIV	GGNNCC	1 cut(s)	331
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	743, 966
NsbI	TGCGCA	1 cut(s)	178
NspI	RCATGY	3 cut(s)	79, 710, 875
PaeI	GCATGC	2 cut(s)	79, 875
PagI	TCATGA	3 cut(s)	235, 616, 1141
PciI	ACATGT	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	243, 641
PfeI	GAWTC	5 cut(s)	40, 239, 274, 431, 560
PkrI	GCNGC	7 cut(s)	103, 292, 295, 539, 1100, 1103, 1168
PleI	GAGTC	3 cut(s)	127, 770, 1027
PpsI	GAGTC	3 cut(s)	127, 770, 1027
PscI	ACATGT	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	788
PstI	CTGCAG	3 cut(s)	477, 658, 1103
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	24, 904
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	4 cut(s)	705, 730, 818, 863
RsaNI	GTAC	4 cut(s)	704, 729, 817, 862
RseI	CAYNNNNRTG	2 cut(s)	948, 1008
SaqAI	TTAA	3 cut(s)	399, 927, 1131
SatI	GCNGC	7 cut(s)	102, 291, 294, 538, 1099, 1102, 1167
Sau3AI	GATC	3 cut(s)	24, 547, 904
Sau96I	GGNCC	1 cut(s)	788
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	3 cut(s)	127, 771, 1027
SfaNI	GCATC	6 cut(s)	63, 441, 559, 661, 1091, 1153
SfcI	CTRYAG	4 cut(s)	226, 473, 654, 1099
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	948, 1008
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SphI	GCATGC	2 cut(s)	79, 875
SsiI	CCGC	4 cut(s)	30, 60, 290, 1104
SspMI	CTAG	3 cut(s)	254, 369, 725
TaaI	ACNGT	3 cut(s)	119, 524, 749
TaiI	ACGT	2 cut(s)	606, 921
TaqI	TCGA	5 cut(s)	131, 136, 272, 550, 999
TatI	WGTACW	2 cut(s)	703, 861
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	5 cut(s)	40, 239, 274, 431, 560
Tru1I	TTAA	3 cut(s)	399, 927, 1131
Tru9I	TTAA	3 cut(s)	399, 927, 1131
TscAI	CASTG	3 cut(s)	340, 409, 529
TseFI	GTSAC	2 cut(s)	743, 966
TseI	GCWGC	6 cut(s)	101, 293, 537, 1098, 1101, 1166
Tsp45I	GTSAC	2 cut(s)	743, 966
TspDTI	ATGAA	9 cut(s)	17, 252, 633, 794, 837, 972, 1026, 1130, 1158
TspRI	CASTG	3 cut(s)	340, 409, 529
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	1 cut(s)	639
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	3 cut(s)	79, 710, 875
XcmI	CCANNNNNNNNNTGG	2 cut(s)	541, 1047
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	2 cut(s)	243, 641
XspI	CTAG	3 cut(s)	254, 369, 725
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.