Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

1706730 .. 1709946

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAGAACCGAAGCTCCAGCAAGATCTCCGCAAAATGGATTCCCATTTTCTGCATACCCTCTTTCTTTCTCGGCATGCTCATCACCAGCAGCAGAATGTGGGCAGTACCTGAATCAAACGGTCAGCTCGTTTCGACTCGTCGTCAAGAACAAGAGCTTCAAATTGTATCTGAAGATTGCGAAACTAAGAAGAAGCTTGGACAAGAGAAGGATGTGATGAACGAAATCTACAAAACCCACGAGTCAATTCAGCACATCAGATCTCTAGACAAGCAAATGGCGTCAATTCAGATGGAACTAGCGGCAGCTCGGAGTTCTAAAGAGATGGGGGTCTCTGATGACTCCACCGCCACGTCAGTATTGCAGAAGGACAATTCAGCCAAGAAGAAAGCATTTATTGTTATTGGAATTAACACTGCTTTTAGTAGTAGGAAGCGGCGAGATTCGGTTAGAGAGACTTGGATGCCTCAAGTGGTTTATGTGGGCTTGATTGCTGGAATCGTGTCAATTGTTCGGCCAGGGGAAAAGCTACTACAGTTGGAGCGTGAGAAGGGGATTGTTATCCGTTTCATGATTGGCCACAGTGCAACATCCAACAGCATTTTAGATCGAGCCATTGATTCAGAAGAATCTCAACACAAGGATTTCCTCAGGCTGGAACACGTTGAAGGTTATCATGAGTTGTCTGCCAAAACAAAAACTTTCTTCACCACTGCAGTTGCAAAGTGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTGGGCATGCTAGCTTCAACTCTTGCCCATCATCGTTCAAAGCCTAGAGTATACATTGGCTGCATGAAATCTGGACCTGTTCTTGCTCAAAAGAGTGTTAAGTACCATGAACCAGAGCACTGGAAGTTTGGTGAGGCGGGAAACAAATACTTCCGACATGCAACTGGACAGATTTATGCAATCTCCAAGGATCTAGCTACATACATCTCCATTAACCAACCCATATTGCATAAGTATGCCAATGAAGATGTGTCTCTTGGTTCGTGGTTCATTGGTCTTGAAGTTGAACACATTGACGAGCGCAATATGTGTTGTGGCACTCCACCAGTTGAATCTTCTGCAGATTGTGAGTGGAAGGCACAGGCAGGTAATGTGTGCATTGCATCATTTGATTGGAGCTGCAGTGGTATCTGCAAGTCAGTGGAGAAGATTAAATTTGTTCACGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGGGTTCATTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

421

Amino Acids

47.31

Weight (kDa)

7.97

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	10 - 106	4.8e-30	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	145 - 357	3.8e-45	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1130
AccI	GTMKAC	1 cut(s)	825
AciI	CCGC	5 cut(s)	30, 302, 348, 436, 911
AclWI	GGATC	1 cut(s)	972
AcoI	YGGCCR	2 cut(s)	515, 577
AcsI	RAATTY	1 cut(s)	1208
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	3 cut(s)	108, 765, 878
AfiI	CCNNNNNNNGG	2 cut(s)	36, 655
AflIII	ACRYGT	2 cut(s)	661, 766
AgsI	TTSAA	7 cut(s)	161, 668, 792, 813, 1055, 1061, 1106
AhdI	GACNNNNNGTC	1 cut(s)	141
AjiI	CACGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	517
AloI	GAACNNNNNNTCC	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	3 cut(s)	337, 449, 1032
AlwI	GGATC	1 cut(s)	972
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	515, 577
ApeKI	GCWGC	5 cut(s)	90, 305, 834, 1173, 1241
ApoI	RAATTY	1 cut(s)	1208
AspLEI	GCGC	1 cut(s)	1077
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	4 cut(s)	76, 700, 917, 1241
AsuNHI	GCTAGC	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	848
AxyI	CCTNAGG	1 cut(s)	650
BalI	TGGCCA	1 cut(s)	579
BauI	CACGAG	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	5 cut(s)	102, 317, 821, 1160, 1253
BccI	CCATC	3 cut(s)	286, 319, 810
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	3 cut(s)	337, 449, 1032
BfaI	CTAG	6 cut(s)	266, 299, 785, 819, 968, 1264
BfmI	CTRYAG	4 cut(s)	533, 714, 1113, 1174
BfuAI	ACCTGC	1 cut(s)	1130
BglII	AGATCT	2 cut(s)	24, 260
BisI	GCNGC	7 cut(s)	91, 303, 306, 437, 835, 1174, 1242
BlsI	GCNGC	7 cut(s)	92, 304, 307, 438, 836, 1175, 1243
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	848
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	848
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	4 cut(s)	453, 721, 1166, 1228
BmtI	GCTAGC	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	518, 960
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1162, 1192
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 655
Bse1I	ACTGG	3 cut(s)	899, 943, 1100
Bse21I	CCTNAGG	1 cut(s)	650
Bse3DI	GCAATG	1 cut(s)	1152
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	518, 960
BseGI	GGATG	6 cut(s)	217, 468, 590, 736, 760, 1243
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	2 cut(s)	36, 655
BseMI	GCAATG	1 cut(s)	1152
BseMII	CTCAG	1 cut(s)	664
BseNI	ACTGG	3 cut(s)	899, 943, 1100
BseXI	GCAGC	5 cut(s)	102, 317, 821, 1160, 1253
BshFI	GGCC	2 cut(s)	517, 579
BsiHKAI	GWGCWC	1 cut(s)	894
BslI	CCNNNNNNNGG	2 cut(s)	36, 655
BsmAI	GTCTC	3 cut(s)	337, 449, 1032
BsnI	GGCC	2 cut(s)	517, 579
Bso31I	GGTCTC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	4 cut(s)	24, 260, 607, 964
BspACI	CCGC	5 cut(s)	30, 302, 348, 436, 911
BspANI	GGCC	2 cut(s)	517, 579
BspCNI	CTCAG	1 cut(s)	663
BspHI	TCATGA	2 cut(s)	570, 676
BspMAI	CTGCAG	3 cut(s)	718, 1117, 1178
BspMI	ACCTGC	1 cut(s)	1130
BspOI	GCTAGC	1 cut(s)	788
BspPI	GGATC	1 cut(s)	972
BspTNI	GGTCTC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	1152
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	3 cut(s)	899, 943, 1100
BssECI	CCNNGG	2 cut(s)	518, 960
BssMI	GATC	4 cut(s)	24, 260, 607, 964
BssNAI	GTATAC	1 cut(s)	826
BssNI	GRCGYC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	960
Bst1107I	GTATAC	1 cut(s)	826
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	122, 537, 584
BstACI	GRCGYC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	763
BstC8I	GCNNGC	3 cut(s)	77, 782, 786
BstDEI	CTNAG	2 cut(s)	186, 650
BstF5I	GGATG	6 cut(s)	217, 468, 590, 736, 760, 1243
BstHHI	GCGC	1 cut(s)	1077
BstKTI	GATC	4 cut(s)	27, 263, 610, 967
BstMAI	GTCTC	3 cut(s)	337, 449, 1032
BstMBI	GATC	4 cut(s)	24, 260, 607, 964
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	4 cut(s)	79, 770, 784, 935
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	4 cut(s)	533, 714, 1113, 1174
BstV1I	GCAGC	5 cut(s)	102, 317, 821, 1160, 1253
BstX2I	RGATCY	3 cut(s)	24, 260, 964
BstXI	CCANNNNNNTGG	1 cut(s)	894
BstYI	RGATCY	3 cut(s)	24, 260, 964
BstZ17I	GTATAC	1 cut(s)	826
Bsu36I	CCTNAGG	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	517, 579
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	6 cut(s)	217, 468, 590, 736, 760, 1243
BtsI	GCAGTG	3 cut(s)	414, 711, 1183
BtsIMutI	CAGTG	6 cut(s)	414, 589, 711, 892, 1183, 1200
BveI	ACCTGC	1 cut(s)	1130
Cac8I	GCNNGC	3 cut(s)	77, 782, 786
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	2 cut(s)	570, 676
CfoI	GCGC	1 cut(s)	1077
Cfr13I	GGNCC	1 cut(s)	848
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	3 cut(s)	107, 764, 877
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	8 cut(s)	76, 571, 677, 767, 781, 838, 881, 932
CviQI	GTAC	3 cut(s)	107, 764, 877
DdeI	CTNAG	2 cut(s)	186, 650
DpnI	GATC	4 cut(s)	26, 262, 609, 966
DpnII	GATC	4 cut(s)	24, 260, 607, 964
DriI	GACNNNNNGTC	1 cut(s)	141
EaeI	YGGCCR	2 cut(s)	515, 577
Eam1105I	GACNNNNNGTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	960
ErhI	CCWWGG	1 cut(s)	960
FaeI	CATG	8 cut(s)	79, 574, 680, 770, 784, 841, 884, 935
FatI	CATG	8 cut(s)	75, 570, 676, 766, 780, 837, 880, 931
FauI	CCCGC	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	7 cut(s)	91, 303, 306, 437, 835, 1174, 1242
FokI	GGATG	6 cut(s)	224, 475, 577, 743, 767, 1250
Fsp4HI	GCNGC	7 cut(s)	91, 303, 306, 437, 835, 1174, 1242
FspBI	CTAG	6 cut(s)	266, 299, 785, 819, 968, 1264
GlaI	GCGC	1 cut(s)	1076
GluI	GCNGC	7 cut(s)	91, 303, 306, 437, 835, 1174, 1242
HaeIII	GGCC	2 cut(s)	517, 579
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	1077
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	8 cut(s)	79, 574, 680, 770, 784, 841, 884, 935
Hin6I	GCGC	1 cut(s)	1075
HinP1I	GCGC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	194
HphI	GGTGA	4 cut(s)	76, 700, 917, 1241
Hpy166II	GTNNAC	2 cut(s)	826, 1216
Hpy188I	TCNGA	7 cut(s)	172, 260, 291, 312, 337, 625, 929
Hpy188III	TCNNGA	7 cut(s)	146, 266, 571, 677, 846, 1052, 1217
Hpy8I	GTNNAC	2 cut(s)	826, 1216
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	6 cut(s)	202, 361, 544, 662, 1123, 1226
HpyCH4III	ACNGT	3 cut(s)	122, 537, 584
HpyCH4IV	ACGT	2 cut(s)	353, 663
HpyF3I	CTNAG	2 cut(s)	186, 650
HpySE526I	ACGT	2 cut(s)	353, 663
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	8 cut(s)	79, 574, 680, 770, 784, 841, 884, 935
HspAI	GCGC	1 cut(s)	1075
Kzo9I	GATC	4 cut(s)	24, 260, 607, 964
LmnI	GCTCC	3 cut(s)	20, 541, 1170
Lsp1109I	GCAGC	5 cut(s)	102, 317, 821, 1160, 1253
LweI	GCATC	4 cut(s)	453, 721, 1166, 1228
MaeI	CTAG	6 cut(s)	266, 299, 785, 819, 968, 1264
MaeII	ACGT	2 cut(s)	353, 663
MalI	GATC	4 cut(s)	26, 262, 609, 966
MboI	GATC	4 cut(s)	24, 260, 607, 964
MboII	GAAGA	9 cut(s)	16, 185, 202, 397, 638, 697, 1031, 1101, 1213
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	3 cut(s)	24, 260, 964
MhlI	GDGCHC	1 cut(s)	894
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	8 cut(s)	162, 246, 285, 373, 408, 507, 772, 1208
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	3 cut(s)	130, 251, 335
MmeI	TCCRAC	3 cut(s)	519, 618, 952
MnlI	CCTC	4 cut(s)	70, 477, 659, 901
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	4 cut(s)	411, 873, 987, 1206
MslI	CAYNNNNRTG	1 cut(s)	1008
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	1244
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	519
NdeII	GATC	4 cut(s)	24, 260, 607, 964
NheI	GCTAGC	1 cut(s)	784
NlaIII	CATG	8 cut(s)	79, 574, 680, 770, 784, 841, 884, 935
NmeAIII	GCCGAG	1 cut(s)	51
NspI	RCATGY	4 cut(s)	79, 770, 784, 935
PaeI	GCATGC	2 cut(s)	79, 784
PagI	TCATGA	2 cut(s)	570, 676
PciI	ACATGT	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	7 cut(s)	40, 113, 443, 498, 620, 629, 1106
PkrI	GCNGC	7 cut(s)	92, 304, 307, 438, 836, 1175, 1243
PleI	GAGTC	3 cut(s)	130, 250, 335
PpsI	GAGTC	3 cut(s)	130, 250, 335
PscI	ACATGT	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	848
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PstI	CTGCAG	3 cut(s)	718, 1117, 1178
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	3 cut(s)	24, 260, 964
PvuII	CAGCTG	1 cut(s)	1244
RsaI	GTAC	3 cut(s)	108, 765, 878
RsaNI	GTAC	3 cut(s)	107, 764, 877
RseI	CAYNNNNRTG	1 cut(s)	1008
SaqAI	TTAA	4 cut(s)	411, 873, 987, 1206
SatI	GCNGC	7 cut(s)	91, 303, 306, 437, 835, 1174, 1242
Sau3AI	GATC	4 cut(s)	24, 260, 607, 964
Sau96I	GGNCC	1 cut(s)	848
SchI	GAGTC	3 cut(s)	130, 251, 335
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	4 cut(s)	453, 721, 1166, 1228
SfcI	CTRYAG	4 cut(s)	533, 714, 1113, 1174
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
SphI	GCATGC	2 cut(s)	79, 784
Sse9I	AATT	8 cut(s)	162, 246, 285, 373, 408, 507, 772, 1208
SsiI	CCGC	5 cut(s)	30, 302, 348, 436, 911
SspMI	CTAG	6 cut(s)	266, 299, 785, 819, 968, 1264
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	960
TaaI	ACNGT	3 cut(s)	122, 537, 584
TaiI	ACGT	2 cut(s)	356, 666
TaqI	TCGA	2 cut(s)	134, 610
TasI	AATT	8 cut(s)	162, 246, 285, 373, 408, 507, 772, 1208
TatI	WGTACW	1 cut(s)	763
TauI	GCSGC	2 cut(s)	305, 439
TfiI	GAWTC	7 cut(s)	40, 113, 443, 498, 620, 629, 1106
Tru1I	TTAA	4 cut(s)	411, 873, 987, 1206
Tru9I	TTAA	4 cut(s)	411, 873, 987, 1206
TscAI	CASTG	6 cut(s)	421, 589, 718, 899, 1183, 1200
TseI	GCWGC	5 cut(s)	90, 305, 834, 1173, 1241
TspDTI	ATGAA	8 cut(s)	17, 233, 559, 854, 897, 1032, 1033, 1245
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	6 cut(s)	421, 589, 718, 899, 1183, 1200
VpaK11BI	GGWCC	1 cut(s)	848
XapI	RAATTY	1 cut(s)	1208
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	4 cut(s)	79, 770, 784, 935
XmiI	GTMKAC	1 cut(s)	825
XspI	CTAG	6 cut(s)	266, 299, 785, 819, 968, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.