Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

2703329 .. 2706413

Gene Structure 3085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCTCATCACCAGCAGAATGTGGGCAGTACCTGAATCGAACGGTCAGCTCATTTCGACTCGTCGTCAAGAGCAAGAGCTTCAAATTGTATCTGAAGATTGTGAAACTAAGAAGAAGCTTGGACAAGAGAAGGATGTGATGAACGAAATCTACAAAACCCACGAGTCAATTCAATCTCTAGACAAGCAAATGGCGTCAATTCAGATGGAACTAGCGGCAGCTCGGAGTTCTAAAGAGATGGGGGTCTCTGATGACTCCACCGCCACGTCAGTATTGCAGAAGGACAATTCAGCCAAGAAGAGAGCATTGGACAATTCAGCCAAGAAGAAAGCATTTATTGTTATTGGAATTAACACTGCTTTTAGTAGTAGGAAGCGGCGAGATTCGGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTACAGTTGGAGCGTGAGAAGGGGATTGTTATCCGTTTCATGATTGGCCACAGTGCAACATCCAACAGCATTTTAGATCGAGCCATTGATTCGGAAGAATCTCAACACAAGGATTTCCTCAGGCTGGAACACGTTGAAGGTTATCATGAGTTGTCTGCCAAAACAAAAATTTTCTTCACCACTGCAGTTGCAAAGTGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTGGGCATGCTAGCTTCAACTCTTGCCCATCATCGTTCAAAGCCTAGAGTATACATTGGCTGCATGAAATCTGGACCTGTTCTTGCTCAAAAGAGTGTTAAGTACCATGAACCAGAGCACTGGAAATTTGGTGAGGCGGGAAACAAATACTTCCGACATGCAACTGGACAGATTTATGCAATCTCCAAGGATCTAGCTACATACATCTCCATTAACCAACCCATATTGCATAAGTATGCCAATGAAGATGTGTCTCTTGGTTCGTGGTTCATTGGTCTTGAAGTTGAACACATTGACGAGCGCAATATGTGTTGTGGCACTCCACCAGATTGTGAGTGGAAGGCACAGGCAGGTAATGTGTGCATTGCATCATTTGATTGGAGCTGCAGTGGTATCTGCAAGTCAGTGGAGAAGATTAAATTTGTTCACGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGGGTTCGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

381

Amino Acids

42.87

Weight (kDa)

6.92

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	1 - 77	1.2e-24	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	125 - 321	2.1e-48	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1007
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	4 cut(s)	215, 261, 376, 803
AclWI	GGATC	1 cut(s)	864
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	3 cut(s)	591, 791, 1085
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	3 cut(s)	30, 657, 770
AfiI	CCNNNNNNNGG	1 cut(s)	547
AflIII	ACRYGT	2 cut(s)	553, 658
AgsI	TTSAA	7 cut(s)	83, 173, 560, 684, 705, 947, 953
AhdI	GACNNNNNGTC	1 cut(s)	63
AjiI	CACGTC	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	9 cut(s)	49, 79, 118, 221, 421, 680, 863, 1050, 1121
AluI	AGCT	9 cut(s)	49, 79, 118, 221, 421, 680, 863, 1050, 1121
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	3 cut(s)	250, 389, 924
AlwI	GGATC	1 cut(s)	864
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	4 cut(s)	218, 726, 1050, 1118
ApoI	RAATTY	3 cut(s)	591, 791, 1085
AspLEI	GCGC	1 cut(s)	969
AspS9I	GGNCC	1 cut(s)	740
AsuHPI	GGTGA	3 cut(s)	592, 809, 1118
AsuNHI	GCTAGC	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	471
BauI	CACGAG	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	230, 713, 1037, 1130
BccI	CCATC	3 cut(s)	199, 232, 702
BcoDI	GTCTC	3 cut(s)	250, 389, 924
BfaI	CTAG	6 cut(s)	179, 212, 677, 711, 860, 1141
BfmI	CTRYAG	3 cut(s)	425, 606, 1051
BfuAI	ACCTGC	1 cut(s)	1007
BisI	GCNGC	6 cut(s)	216, 219, 377, 727, 1051, 1119
BlsI	GCNGC	6 cut(s)	217, 220, 378, 728, 1052, 1120
Bme18I	GGWCC	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	740
BmsI	GCATC	4 cut(s)	393, 613, 1043, 1105
BmtI	GCTAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	852
BsaXI	ACNNNNNCTCC	2 cut(s)	1039, 1069
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	791, 835
Bse21I	CCTNAGG	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	1029
Bse8I	GATNNNNATC	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	852
BseGI	GGATG	6 cut(s)	139, 408, 482, 628, 652, 1120
BseJI	GATNNNNATC	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	2 cut(s)	791, 835
BseXI	GCAGC	4 cut(s)	230, 713, 1037, 1130
BshFI	GGCC	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	786
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	3 cut(s)	250, 389, 924
BsnI	GGCC	1 cut(s)	471
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	2 cut(s)	499, 856
BspACI	CCGC	4 cut(s)	215, 261, 376, 803
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	555
BspHI	TCATGA	2 cut(s)	462, 568
BspMAI	CTGCAG	2 cut(s)	610, 1055
BspMI	ACCTGC	1 cut(s)	1007
BspOI	GCTAGC	1 cut(s)	680
BspPI	GGATC	1 cut(s)	864
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	1029
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	791, 835
BssECI	CCNNGG	1 cut(s)	852
BssMI	GATC	2 cut(s)	499, 856
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	852
Bst1107I	GTATAC	1 cut(s)	718
Bst2BI	CACGAG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	44, 429, 476
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	2 cut(s)	674, 678
BstDEI	CTNAG	2 cut(s)	108, 542
BstF5I	GGATG	6 cut(s)	139, 408, 482, 628, 652, 1120
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	2 cut(s)	502, 859
BstMAI	GTCTC	3 cut(s)	250, 389, 924
BstMBI	GATC	2 cut(s)	499, 856
BstNSI	RCATGY	3 cut(s)	662, 676, 827
BstSFI	CTRYAG	3 cut(s)	425, 606, 1051
BstV1I	GCAGC	4 cut(s)	230, 713, 1037, 1130
BstX2I	RGATCY	1 cut(s)	856
BstXI	CCANNNNNNTGG	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	856
BstZ17I	GTATAC	1 cut(s)	718
Bsu36I	CCTNAGG	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	6 cut(s)	139, 408, 482, 628, 652, 1120
BtsI	GCAGTG	3 cut(s)	354, 603, 1060
BtsIMutI	CAGTG	6 cut(s)	354, 481, 603, 784, 1060, 1077
BveI	ACCTGC	1 cut(s)	1007
Cac8I	GCNNGC	2 cut(s)	674, 678
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	2 cut(s)	462, 568
CfoI	GCGC	1 cut(s)	969
Cfr13I	GGNCC	1 cut(s)	740
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	29, 656, 769
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	7 cut(s)	463, 569, 659, 673, 730, 773, 824
CviQI	GTAC	3 cut(s)	29, 656, 769
DdeI	CTNAG	2 cut(s)	108, 542
DpnI	GATC	2 cut(s)	501, 858
DpnII	GATC	2 cut(s)	499, 856
DriI	GACNNNNNGTC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	293
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	852
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	7 cut(s)	466, 572, 662, 676, 733, 776, 827
FatI	CATG	7 cut(s)	462, 568, 658, 672, 729, 772, 823
FauI	CCCGC	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	6 cut(s)	216, 219, 377, 727, 1051, 1119
FokI	GGATG	6 cut(s)	146, 415, 469, 635, 659, 1127
Fsp4HI	GCNGC	6 cut(s)	216, 219, 377, 727, 1051, 1119
FspBI	CTAG	6 cut(s)	179, 212, 677, 711, 860, 1141
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	6 cut(s)	216, 219, 377, 727, 1051, 1119
HaeIII	GGCC	1 cut(s)	471
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	969
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	7 cut(s)	466, 572, 662, 676, 733, 776, 827
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	7 cut(s)	35, 58, 164, 254, 383, 512, 521
HphI	GGTGA	3 cut(s)	592, 809, 1118
Hpy166II	GTNNAC	2 cut(s)	718, 1093
Hpy188I	TCNGA	6 cut(s)	94, 204, 225, 250, 517, 821
Hpy188III	TCNNGA	7 cut(s)	68, 179, 463, 569, 738, 944, 1094
Hpy8I	GTNNAC	2 cut(s)	718, 1093
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	6 cut(s)	124, 274, 436, 554, 1000, 1103
HpyCH4III	ACNGT	3 cut(s)	44, 429, 476
HpyCH4IV	ACGT	2 cut(s)	266, 555
HpyF3I	CTNAG	2 cut(s)	108, 542
HpySE526I	ACGT	2 cut(s)	266, 555
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	7 cut(s)	466, 572, 662, 676, 733, 776, 827
HspAI	GCGC	1 cut(s)	967
Kzo9I	GATC	2 cut(s)	499, 856
LmnI	GCTCC	2 cut(s)	433, 1047
Lsp1109I	GCAGC	4 cut(s)	230, 713, 1037, 1130
LweI	GCATC	4 cut(s)	393, 613, 1043, 1105
MaeI	CTAG	6 cut(s)	179, 212, 677, 711, 860, 1141
MaeII	ACGT	2 cut(s)	266, 555
MalI	GATC	2 cut(s)	501, 858
MboI	GATC	2 cut(s)	499, 856
MboII	GAAGA	8 cut(s)	107, 124, 310, 337, 530, 589, 923, 1090
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	3 cut(s)	52, 173, 248
MmeI	TCCRAC	3 cut(s)	411, 510, 844
MnlI	CCTC	3 cut(s)	417, 551, 793
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	4 cut(s)	351, 765, 879, 1083
MslI	CAYNNNNRTG	1 cut(s)	900
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	1121
NdeII	GATC	2 cut(s)	499, 856
NheI	GCTAGC	1 cut(s)	676
NlaIII	CATG	7 cut(s)	466, 572, 662, 676, 733, 776, 827
NspI	RCATGY	3 cut(s)	662, 676, 827
PaeI	GCATGC	1 cut(s)	676
PagI	TCATGA	2 cut(s)	462, 568
PciI	ACATGT	1 cut(s)	658
PfeI	GAWTC	4 cut(s)	35, 383, 512, 521
PkrI	GCNGC	6 cut(s)	217, 220, 378, 728, 1052, 1120
PleI	GAGTC	3 cut(s)	52, 172, 248
PpsI	GAGTC	3 cut(s)	52, 172, 248
PscI	ACATGT	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	740
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PstI	CTGCAG	2 cut(s)	610, 1055
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	3 cut(s)	30, 657, 770
RsaNI	GTAC	3 cut(s)	29, 656, 769
RseI	CAYNNNNRTG	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	351, 765, 879, 1083
SatI	GCNGC	6 cut(s)	216, 219, 377, 727, 1051, 1119
Sau3AI	GATC	2 cut(s)	499, 856
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	3 cut(s)	52, 173, 248
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	4 cut(s)	393, 613, 1043, 1105
SfcI	CTRYAG	3 cut(s)	425, 606, 1051
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	900
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SphI	GCATGC	1 cut(s)	676
SsiI	CCGC	4 cut(s)	215, 261, 376, 803
SspMI	CTAG	6 cut(s)	179, 212, 677, 711, 860, 1141
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	3 cut(s)	44, 429, 476
TaiI	ACGT	2 cut(s)	269, 558
TaqI	TCGA	3 cut(s)	38, 56, 502
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	2 cut(s)	218, 379
TfiI	GAWTC	4 cut(s)	35, 383, 512, 521
Tru1I	TTAA	4 cut(s)	351, 765, 879, 1083
Tru9I	TTAA	4 cut(s)	351, 765, 879, 1083
TscAI	CASTG	6 cut(s)	361, 481, 610, 791, 1060, 1077
TseI	GCWGC	4 cut(s)	218, 726, 1050, 1118
TspDTI	ATGAA	6 cut(s)	155, 451, 746, 789, 924, 925
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	6 cut(s)	361, 481, 610, 791, 1060, 1077
VpaK11BI	GGWCC	1 cut(s)	740
XapI	RAATTY	3 cut(s)	591, 791, 1085
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	3 cut(s)	662, 676, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	999
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	6 cut(s)	179, 212, 677, 711, 860, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.