Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

37335711 .. 37336313

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0339200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAACCAAGCAAATGTCGTCTCCACTATCGGCTTTGGGGAGTTACATCACCTGGGATGCACCACAATATATGACACGGTATGTGAGATGATGGTTAATAGTATTGATTCTCTAAACGAGATTGTGTTGATACATGGCAAGGAAGTACCATTTGGACCCAAAGACTTTGCACTTGTCATGGACATAAAGGATGGTAGATTAGACATTCAGATGATGGGAGATACGAATGAAAGTCTTGTTAGGTTAATTAGGAAACAATTGGGGGGTGGAGAAGGTGGACTACACATTACAAGTTTGAAGAAATGTATCATGGAAAGTACACGGCCTGATGAAATATTCAAGACAACCTATACACTTTATGCGGTCGCATGCATTTTATGTCCCAACGGAACCAATTTGGTCGACCAGTCATTAATTTCTACTCTAGTAGAGACGAACATGATAAAGGATCTAAATTGGGCAACGTTCTGCTACTATAAGATACAGGAGTCGATCATATCGATGCAGTCGAAAGAGTTCCGCAACCAAGCAATTTGTGTGCTATTCCTACAGAACTTTTACTTTGATGTCATTGATAATGGATCCAGATGGGTTGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

200

Amino Acids

22.56

Weight (kDa)

5.05

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	2 cut(s)	362, 520
AclI	AACGTT	1 cut(s)	464
AclWI	GGATC	3 cut(s)	456, 576, 589
AfaI	GTAC	2 cut(s)	147, 319
AgsI	TTSAA	2 cut(s)	298, 340
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw26I	GTCTC	2 cut(s)	25, 425
AlwI	GGATC	3 cut(s)	456, 576, 589
AoxI	GGCC	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BamHI	GGATCC	1 cut(s)	581
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BccI	CCATC	4 cut(s)	85, 185, 208, 582
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	25, 425
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	3 cut(s)	157, 391, 583
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	47, 492
Bsa29I	ATCGAT	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	62, 196
BseNI	ACTGG	1 cut(s)	406
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	25, 425
BsmBI	CGTCTC	2 cut(s)	25, 425
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	448, 492, 581
BspACI	CCGC	2 cut(s)	362, 520
BspANI	GGCC	1 cut(s)	325
BspDI	ATCGAT	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	157, 391, 583
BspPI	GGATC	3 cut(s)	456, 576, 589
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	448, 492, 581
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	62, 196
BstKTI	GATC	3 cut(s)	451, 495, 584
BstMAI	GTCTC	2 cut(s)	25, 425
BstMBI	GATC	3 cut(s)	448, 492, 581
BstMCI	CGRYCG	1 cut(s)	366
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	448, 581
BstYI	RGATCY	2 cut(s)	448, 581
Bsu15I	ATCGAT	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	325
BsuTUI	ATCGAT	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	62, 196
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	500
Csp6I	GTAC	2 cut(s)	146, 318
CviAII	CATG	5 cut(s)	134, 178, 310, 369, 439
CviJI	RGCY	2 cut(s)	33, 325
CviKI_1	RGCY	2 cut(s)	33, 325
CviQI	GTAC	2 cut(s)	146, 318
DpnI	GATC	3 cut(s)	450, 494, 583
DpnII	GATC	3 cut(s)	448, 492, 581
Eco47I	GGWCC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	374
Esp3I	CGTCTC	2 cut(s)	25, 425
FaeI	CATG	5 cut(s)	137, 181, 313, 372, 442
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	5 cut(s)	133, 177, 309, 368, 438
FblI	GTMKAC	1 cut(s)	402
FokI	GGATG	2 cut(s)	69, 203
FspBI	CTAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	137, 181, 313, 372, 442
HincII	GTYRAC	2 cut(s)	403, 595
HindII	GTYRAC	2 cut(s)	403, 595
HinfI	GANTC	2 cut(s)	107, 488
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	4 cut(s)	278, 320, 403, 595
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	340, 585
Hpy8I	GTNNAC	4 cut(s)	278, 320, 403, 595
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	60, 170, 372, 505
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	5 cut(s)	137, 181, 313, 372, 442
Kzo9I	GATC	3 cut(s)	448, 492, 581
LpnPI	CCDG	6 cut(s)	38, 65, 339, 419, 470, 598
LweI	GCATC	2 cut(s)	47, 492
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	3 cut(s)	450, 494, 583
MboI	GATC	3 cut(s)	448, 492, 581
MboII	GAAGA	1 cut(s)	310
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	2 cut(s)	448, 581
MluCI	AATT	6 cut(s)	246, 257, 394, 414, 454, 531
MlyI	GAGTC	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	3 cut(s)	96, 245, 413
MslI	CAYNNNNRTG	2 cut(s)	209, 500
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	448, 492, 581
NlaIII	CATG	5 cut(s)	137, 181, 313, 372, 442
NlaIV	GGNNCC	3 cut(s)	157, 391, 583
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	2 cut(s)	497, 506
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PshBI	ATTAAT	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	157, 391, 583
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	448, 581
RsaI	GTAC	2 cut(s)	147, 319
RsaNI	GTAC	2 cut(s)	146, 318
RseI	CAYNNNNRTG	2 cut(s)	209, 500
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	3 cut(s)	96, 245, 413
Sau3AI	GATC	3 cut(s)	448, 492, 581
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	5 cut(s)	54, 245, 277, 350, 467
SfaNI	GCATC	2 cut(s)	47, 492
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	209, 500
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	6 cut(s)	246, 257, 394, 414, 454, 531
SsiI	CCGC	2 cut(s)	362, 520
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	4 cut(s)	402, 491, 500, 509
TasI	AATT	6 cut(s)	246, 257, 394, 414, 454, 531
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	96, 245, 413
Tru9I	TTAA	3 cut(s)	96, 245, 413
TspDTI	ATGAA	3 cut(s)	17, 243, 345
TspGWI	ACGGA	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	413
XceI	RCATGY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.