Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Forward (+)

65312511 .. 65316050

Gene Structure 3540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAGAACCGAAGCTCCAGCAAGATCTCCGCAAAATGGATTCCCATTTTCTGTATACCCTCCTTTTTTCTCGGCATGCTGATCACCAGCAGAATGTGGGCGGTACCTGAATCGAACGGTCAGCTCATTTCGACTCGTCGTCACGAGCAAGAGCTTCAAATTGTATCTGAAGATTGCGAAACTAAGAAGAAGCTTGGACAAGAGAAGGATGTGATGAACGAAATCTACAAAACCCACGAGTCAATTCAGCACATCAGATCTCTAGACAAGCAAATGGCGTCAATTCAGATGGAACTAGCGGCAGCTCGGAGTTCTAAAGAGATGGGGGTCTCTGATGACTCCACCGCCACGTCAGTATTGCAGAAGGACAATTCAGCCAAGAAGAAAGCATTTATTGTTATTGGAATTAACACTGCTTTTAGTAGTAGGAAGCGGCGAGATTCGGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTACAGTTGGAGCGTGAGAAGGGGATTGTTATCCGTTTCATGATTGGCCACAGTGCAACATCCAACAGCATTTTAGATCGAGCCATTGATTCAGAAGAATCTCAACACAAGGATTTCCTCAGGCTGGAACACGTTGAAGGTTATCATGAGTTGTCTGCCAAAACAAAAACTTTCTTCACCACTGCAGTTGCAAAGTGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTGGGCATGCTAGCTTCAACTCTTGCCCATCATCGTTCAAAGCCTAGAGTATACATTGGCTGCATGAAATCTGGACCTGTTCTTGCTCAAAAGAGTGTTAAGTACCATGAACCAGAGCACTGGAAGTTTGGTGAGGCGGGAAACAAATACTTCCGACATGCAACTGGACAGATTTATGCAATCTCCAAGGATCTAGCTACATACATCTCCATTAACCAACCCATATTGCATAAGTATGCCAATGAAGATGTGTCTCTTGGTTCGTGGTTCATCGGTCTTGAAGTTGAACACATTGACGAGCGCAATATGTGTTGTGGCACTCCACCAGATTGTGAGTGGAAGGCACAGGCAGGTAATGTGTGCATTGCATCATTTGATTGGAGCTGCAGTGGTATCTGCAAGTCAGTGGAGAAGATTAAATTTGTTCACGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGGGTTCGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

399

Amino Acids

45.13

Weight (kDa)

7.97

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	10 - 105	1.5e-32	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	144 - 340	1.1e-48	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1064
Acc65I	GGTACC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	2 cut(s)	55, 774
AciI	CCGC	6 cut(s)	30, 101, 299, 345, 433, 860
AclWI	GGATC	1 cut(s)	921
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	1142
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	3 cut(s)	105, 714, 827
AfiI	CCNNNNNNNGG	2 cut(s)	36, 604
AflIII	ACRYGT	2 cut(s)	610, 715
AgsI	TTSAA	6 cut(s)	158, 617, 741, 762, 1004, 1010
AhdI	GACNNNNNGTC	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	351
AloI	GAACNNNNNNTCC	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	3 cut(s)	334, 446, 981
AlwI	GGATC	1 cut(s)	921
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	4 cut(s)	302, 783, 1107, 1175
ApoI	RAATTY	1 cut(s)	1142
Asp718I	GGTACC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	1026
AspS9I	GGNCC	1 cut(s)	797
AsuHPI	GGTGA	4 cut(s)	76, 649, 866, 1175
AsuNHI	GCTAGC	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	797
AxyI	CCTNAGG	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	103
BauI	CACGAG	2 cut(s)	143, 236
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	4 cut(s)	314, 770, 1094, 1187
BccI	CCATC	3 cut(s)	283, 316, 759
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	334, 446, 981
BfaI	CTAG	6 cut(s)	263, 296, 734, 768, 917, 1198
BfmI	CTRYAG	3 cut(s)	482, 663, 1108
BfuAI	ACCTGC	1 cut(s)	1064
BglII	AGATCT	2 cut(s)	24, 257
BisI	GCNGC	6 cut(s)	300, 303, 434, 784, 1108, 1176
BlsI	GCNGC	6 cut(s)	301, 304, 435, 785, 1109, 1177
Bme18I	GGWCC	1 cut(s)	797
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	797
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	4 cut(s)	450, 670, 1100, 1162
BmtI	GCTAGC	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	909
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1096, 1126
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 604
Bse1I	ACTGG	2 cut(s)	848, 892
Bse21I	CCTNAGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	1086
Bse8I	GATNNNNATC	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	909
BseGI	GGATG	6 cut(s)	214, 465, 539, 685, 709, 1177
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	36, 604
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	2 cut(s)	848, 892
BseXI	GCAGC	4 cut(s)	314, 770, 1094, 1187
BshFI	GGCC	1 cut(s)	528
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	843
BslI	CCNNNNNNNGG	2 cut(s)	36, 604
BsmAI	GTCTC	3 cut(s)	334, 446, 981
BsnI	GGCC	1 cut(s)	528
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp1407I	TGTACA	1 cut(s)	712
Bsp143I	GATC	5 cut(s)	24, 81, 257, 556, 913
BspACI	CCGC	6 cut(s)	30, 101, 299, 345, 433, 860
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	612
BspHI	TCATGA	2 cut(s)	519, 625
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	667, 1112
BspMI	ACCTGC	1 cut(s)	1064
BspOI	GCTAGC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	921
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	1086
BsrGI	TGTACA	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	848, 892
BssECI	CCNNGG	1 cut(s)	909
BssMI	GATC	5 cut(s)	24, 81, 257, 556, 913
BssNAI	GTATAC	2 cut(s)	56, 775
BssNI	GRCGYC	1 cut(s)	278
BssSI	CACGAG	2 cut(s)	143, 236
BssT1I	CCWWGG	1 cut(s)	909
Bst1107I	GTATAC	2 cut(s)	56, 775
Bst2BI	CACGAG	2 cut(s)	143, 236
Bst4CI	ACNGT	3 cut(s)	119, 486, 533
BstACI	GRCGYC	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	77, 731, 735
BstDEI	CTNAG	2 cut(s)	183, 599
BstF5I	GGATG	6 cut(s)	214, 465, 539, 685, 709, 1177
BstHHI	GCGC	1 cut(s)	1026
BstKTI	GATC	5 cut(s)	27, 84, 260, 559, 916
BstMAI	GTCTC	3 cut(s)	334, 446, 981
BstMBI	GATC	5 cut(s)	24, 81, 257, 556, 913
BstNSI	RCATGY	4 cut(s)	79, 719, 733, 884
BstSFI	CTRYAG	3 cut(s)	482, 663, 1108
BstV1I	GCAGC	4 cut(s)	314, 770, 1094, 1187
BstX2I	RGATCY	3 cut(s)	24, 257, 913
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	3 cut(s)	24, 257, 913
BstZ17I	GTATAC	2 cut(s)	56, 775
Bsu36I	CCTNAGG	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	6 cut(s)	214, 465, 539, 685, 709, 1177
BtsI	GCAGTG	3 cut(s)	411, 660, 1117
BtsIMutI	CAGTG	6 cut(s)	411, 538, 660, 841, 1117, 1134
BveI	ACCTGC	1 cut(s)	1064
Cac8I	GCNNGC	3 cut(s)	77, 731, 735
CciI	TCATGA	2 cut(s)	519, 625
CfoI	GCGC	1 cut(s)	1026
Cfr13I	GGNCC	1 cut(s)	797
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	104, 713, 826
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	8 cut(s)	76, 520, 626, 716, 730, 787, 830, 881
CviQI	GTAC	3 cut(s)	104, 713, 826
DdeI	CTNAG	2 cut(s)	183, 599
DpnI	GATC	5 cut(s)	26, 83, 259, 558, 915
DpnII	GATC	5 cut(s)	24, 81, 257, 556, 913
DriI	GACNNNNNGTC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	526
Eam1105I	GACNNNNNGTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	909
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	909
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	8 cut(s)	79, 523, 629, 719, 733, 790, 833, 884
FatI	CATG	8 cut(s)	75, 519, 625, 715, 729, 786, 829, 880
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	2 cut(s)	55, 774
Fnu4HI	GCNGC	6 cut(s)	300, 303, 434, 784, 1108, 1176
FokI	GGATG	6 cut(s)	221, 472, 526, 692, 716, 1184
Fsp4HI	GCNGC	6 cut(s)	300, 303, 434, 784, 1108, 1176
FspBI	CTAG	6 cut(s)	263, 296, 734, 768, 917, 1198
GlaI	GCGC	1 cut(s)	1025
GluI	GCNGC	6 cut(s)	300, 303, 434, 784, 1108, 1176
HaeIII	GGCC	1 cut(s)	528
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	1026
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	8 cut(s)	79, 523, 629, 719, 733, 790, 833, 884
Hin6I	GCGC	1 cut(s)	1024
HinP1I	GCGC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	8 cut(s)	40, 110, 133, 239, 338, 440, 569, 578
HphI	GGTGA	4 cut(s)	76, 649, 866, 1175
Hpy166II	GTNNAC	3 cut(s)	56, 775, 1150
Hpy188I	TCNGA	7 cut(s)	169, 257, 288, 309, 334, 574, 878
Hpy188III	TCNNGA	7 cut(s)	143, 263, 520, 626, 795, 1001, 1151
Hpy8I	GTNNAC	3 cut(s)	56, 775, 1150
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	6 cut(s)	199, 358, 493, 611, 1057, 1160
HpyCH4III	ACNGT	3 cut(s)	119, 486, 533
HpyCH4IV	ACGT	2 cut(s)	350, 612
HpyF3I	CTNAG	2 cut(s)	183, 599
HpySE526I	ACGT	2 cut(s)	350, 612
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	8 cut(s)	79, 523, 629, 719, 733, 790, 833, 884
HspAI	GCGC	1 cut(s)	1024
KpnI	GGTACC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	24, 81, 257, 556, 913
LmnI	GCTCC	3 cut(s)	20, 490, 1104
Lsp1109I	GCAGC	4 cut(s)	314, 770, 1094, 1187
LweI	GCATC	4 cut(s)	450, 670, 1100, 1162
MaeI	CTAG	6 cut(s)	263, 296, 734, 768, 917, 1198
MaeII	ACGT	2 cut(s)	350, 612
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	5 cut(s)	26, 83, 259, 558, 915
MboI	GATC	5 cut(s)	24, 81, 257, 556, 913
MboII	GAAGA	8 cut(s)	16, 182, 199, 394, 587, 646, 980, 1147
MflI	RGATCY	3 cut(s)	24, 257, 913
MhlI	GDGCHC	1 cut(s)	843
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	7 cut(s)	159, 243, 282, 370, 405, 721, 1142
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	3 cut(s)	127, 248, 332
MmeI	TCCRAC	3 cut(s)	468, 567, 901
MnlI	CCTC	4 cut(s)	70, 474, 608, 850
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	4 cut(s)	408, 822, 936, 1140
MslI	CAYNNNNRTG	1 cut(s)	957
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	1178
NdeII	GATC	5 cut(s)	24, 81, 257, 556, 913
NheI	GCTAGC	1 cut(s)	733
NlaIII	CATG	8 cut(s)	79, 523, 629, 719, 733, 790, 833, 884
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	4 cut(s)	79, 719, 733, 884
PaeI	GCATGC	2 cut(s)	79, 733
PagI	TCATGA	2 cut(s)	519, 625
PciI	ACATGT	1 cut(s)	715
PfeI	GAWTC	5 cut(s)	40, 110, 440, 569, 578
PkrI	GCNGC	6 cut(s)	301, 304, 435, 785, 1109, 1177
PleI	GAGTC	3 cut(s)	127, 247, 332
PpsI	GAGTC	3 cut(s)	127, 247, 332
PscI	ACATGT	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	797
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PstI	CTGCAG	2 cut(s)	667, 1112
PsuI	RGATCY	3 cut(s)	24, 257, 913
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	3 cut(s)	105, 714, 827
RsaNI	GTAC	3 cut(s)	104, 713, 826
RseI	CAYNNNNRTG	1 cut(s)	957
SaqAI	TTAA	4 cut(s)	408, 822, 936, 1140
SatI	GCNGC	6 cut(s)	300, 303, 434, 784, 1108, 1176
Sau3AI	GATC	5 cut(s)	24, 81, 257, 556, 913
Sau96I	GGNCC	1 cut(s)	797
SchI	GAGTC	3 cut(s)	127, 248, 332
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	4 cut(s)	450, 670, 1100, 1162
SfcI	CTRYAG	3 cut(s)	482, 663, 1108
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
SphI	GCATGC	2 cut(s)	79, 733
Sse9I	AATT	7 cut(s)	159, 243, 282, 370, 405, 721, 1142
SsiI	CCGC	6 cut(s)	30, 101, 299, 345, 433, 860
SspMI	CTAG	6 cut(s)	263, 296, 734, 768, 917, 1198
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	3 cut(s)	119, 486, 533
TaiI	ACGT	2 cut(s)	353, 615
TaqI	TCGA	3 cut(s)	113, 131, 559
TaqII	GACCGA	1 cut(s)	986
TasI	AATT	7 cut(s)	159, 243, 282, 370, 405, 721, 1142
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	2 cut(s)	302, 436
TfiI	GAWTC	5 cut(s)	40, 110, 440, 569, 578
Tru1I	TTAA	4 cut(s)	408, 822, 936, 1140
Tru9I	TTAA	4 cut(s)	408, 822, 936, 1140
TscAI	CASTG	6 cut(s)	418, 538, 667, 848, 1117, 1134
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	302, 783, 1107, 1175
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	7 cut(s)	17, 230, 508, 803, 846, 981, 982
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	6 cut(s)	418, 538, 667, 848, 1117, 1134
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	1 cut(s)	1142
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	4 cut(s)	79, 719, 733, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1056
XmiI	GTMKAC	2 cut(s)	55, 774
XspI	CTAG	6 cut(s)	263, 296, 734, 768, 917, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.