Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Forward (+)

21899266 .. 21903051

Gene Structure 3786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1104200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAAGAGCCGAAGCTCCAAGATCTCCGCAACTTGGATTCCCATTTTCTGCATCCCCGCTTTCCTTCTCGGCATGCTCATCACCGGCAGAATGTGGGCAGCACCTGAAACCAACGGTCAGCTAATTTCGACTCGACGCCAAGAGCAAGAGCTTCAAATCGTCTCGGAAGATTGCGAAACTAAGAAGAAGCATGGACAAGATAAGAATGTGATGGACGAAATCTACAGAACCCATGAATCAATTCAATCTCTAGACAAGCAGATGGCGTTGATTCAGATGGAATTGGCGGCAGCTCGGAGTTCGCAGGAGATGGGGAACTCCGGTGGCTCCACCGCCAACTTGCAATTGTCTAAGGCCAATTCAACTAGAAAGAAAGCATTTATTGTTATTGGAATTAACACTGCTTTTAGTAGTAGAAGGAGGCGAGATTCAGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTGCAGTTGGAGCGGGAGAAAGGGATAGTTATCCGATTTATGATTGGCCACAGTGCAACATCCAACAGCATTTTGGATCGAGCCATTGATTCAGAAGATGCTCAACATAATGATTTCCTCAGGCTGGAACACGTTGAAGGCTATCATGAATTGTCTGCCAAAACGAAAATTTTCTTCACTACTGCAGTTGCACAATGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTAGGTATGCTAGGTACTACTCTTGCCCGTCACCATTCAAAACCAAGAGTCTACATTGGGTGTATGAAATCTGGACCTGTTCTTGCCCAAAAGAATGTGAAGTACCATGAACCGGAGTATTGGAAGTTTGGAGAGGAGGGAAACAAGTACTTCCGGCATGCAACTGGACAGATTTATGCAATTTCAAGGGATCTTGCTACATACGTCTCCATTAATCAGCCCATATTGCATAAGTATGCCAATGAAGATGTGTCACTTGGTTCGTGGTTTATTGGTCTTGAAGTCGAACACATTGATGAACGCAATATGTGCTGTGGGACTCCACCAGATTGTGAGTGGAAGGCACAGGCAGGTAATGTGTGTATTGCATCATTTGATTGGAGCTGCAGCGGTATCTGCAAGTCGGTGGAAAGGATTAAATCTGTTCATGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGAGTTCGTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

396

Amino Acids

44.61

Weight (kDa)

6.92

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	9 - 101	4.5e-31	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	140 - 336	1.4e-48	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1052
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	762
AciI	CCGC	6 cut(s)	27, 57, 287, 333, 481, 1101
AclWI	GGATC	2 cut(s)	552, 909
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	4 cut(s)	702, 727, 815, 860
AfiI	CCNNNNNNNGG	3 cut(s)	33, 592, 823
AflIII	ACRYGT	2 cut(s)	598, 703
AgsI	TTSAA	7 cut(s)	155, 245, 363, 605, 750, 897, 992
AluBI	AGCT	7 cut(s)	15, 121, 151, 293, 466, 1095, 1166
AluI	AGCT	7 cut(s)	15, 121, 151, 293, 466, 1095, 1166
Alw26I	GTCTC	3 cut(s)	166, 434, 922
AlwI	GGATC	2 cut(s)	552, 909
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	354, 514
ApeKI	GCWGC	5 cut(s)	98, 290, 1095, 1098, 1163
ApoI	RAATTY	1 cut(s)	636
AseI	ATTAAT	1 cut(s)	924
Asp700I	GAANNNNTTC	2 cut(s)	240, 638
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	3 cut(s)	73, 734, 1163
AvaII	GGWCC	1 cut(s)	785
AxyI	CCTNAGG	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	516
BbvI	GCAGC	5 cut(s)	110, 302, 1082, 1110, 1175
BccI	CCATC	4 cut(s)	205, 256, 271, 304
BcoDI	GTCTC	3 cut(s)	166, 434, 922
BfaI	CTAG	3 cut(s)	251, 366, 722
BfmI	CTRYAG	4 cut(s)	223, 470, 651, 1096
BfuAI	ACCTGC	1 cut(s)	1052
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	6 cut(s)	99, 288, 291, 1096, 1099, 1164
BlsI	GCNGC	6 cut(s)	100, 289, 292, 1097, 1100, 1165
BmcAI	AGTACT	1 cut(s)	860
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	6 cut(s)	60, 438, 556, 658, 1088, 1150
BpuEI	CTTGAG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	497
BsaHI	GRCGYC	1 cut(s)	136
BsaWI	WCCGGW	2 cut(s)	320, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 592, 823
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	880
Bse21I	CCTNAGG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	497
BseGI	GGATG	6 cut(s)	51, 453, 527, 673, 697, 1165
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	3 cut(s)	33, 592, 823
BseMII	CTCAG	1 cut(s)	601
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	5 cut(s)	110, 302, 1082, 1110, 1175
BshFI	GGCC	2 cut(s)	356, 516
BsiSI	CCGG	4 cut(s)	84, 321, 824, 865
BslFI	GGGAC	1 cut(s)	1042
BslI	CCNNNNNNNGG	3 cut(s)	33, 592, 823
BsmAI	GTCTC	3 cut(s)	166, 434, 922
BsmBI	CGTCTC	2 cut(s)	166, 922
BsmFI	GGGAC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	356, 516
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	21, 544, 901
BspACI	CCGC	6 cut(s)	27, 57, 287, 333, 481, 1101
BspANI	GGCC	2 cut(s)	356, 516
BspCNI	CTCAG	1 cut(s)	600
BspHI	TCATGA	2 cut(s)	613, 1138
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	3 cut(s)	474, 655, 1100
BspMI	ACCTGC	1 cut(s)	1052
BspPI	GGATC	2 cut(s)	552, 909
BsrBI	CCGCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	880
BssAI	RCCGGY	1 cut(s)	83
BssMI	GATC	3 cut(s)	21, 544, 901
BssNI	GRCGYC	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	116, 521
BstACI	GRCGYC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	1020
BstAUI	TGTACA	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	74, 870
BstDEI	CTNAG	3 cut(s)	180, 351, 587
BstF5I	GGATG	6 cut(s)	51, 453, 527, 673, 697, 1165
BstKTI	GATC	3 cut(s)	24, 547, 904
BstMAI	GTCTC	3 cut(s)	166, 434, 922
BstMBI	GATC	3 cut(s)	21, 544, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	478, 937, 1020, 1107
BstNSI	RCATGY	3 cut(s)	76, 707, 872
BstSFI	CTRYAG	4 cut(s)	223, 470, 651, 1096
BstV1I	GCAGC	5 cut(s)	110, 302, 1082, 1110, 1175
BstX2I	RGATCY	2 cut(s)	21, 901
BstYI	RGATCY	2 cut(s)	21, 901
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	356, 516
BtsCI	GGATG	6 cut(s)	51, 453, 527, 673, 697, 1165
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 526
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	2 cut(s)	74, 870
CaiI	CAGNNNCTG	1 cut(s)	104
CciI	TCATGA	2 cut(s)	613, 1138
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	4 cut(s)	701, 726, 814, 859
CviAII	CATG	8 cut(s)	73, 191, 233, 614, 704, 818, 869, 1139
CviQI	GTAC	4 cut(s)	701, 726, 814, 859
DdeI	CTNAG	3 cut(s)	180, 351, 587
DpnI	GATC	3 cut(s)	23, 546, 903
DpnII	GATC	3 cut(s)	21, 544, 901
EaeI	YGGCCR	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	785
Eco81I	CCTNAGG	1 cut(s)	587
Esp3I	CGTCTC	2 cut(s)	166, 922
FaeI	CATG	8 cut(s)	76, 194, 236, 617, 707, 821, 872, 1142
FaqI	GGGAC	1 cut(s)	1042
FatI	CATG	8 cut(s)	72, 190, 232, 613, 703, 817, 868, 1138
FauI	CCCGC	2 cut(s)	64, 474
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	6 cut(s)	99, 288, 291, 1096, 1099, 1164
FokI	GGATG	6 cut(s)	38, 460, 514, 680, 704, 1172
Fsp4HI	GCNGC	6 cut(s)	99, 288, 291, 1096, 1099, 1164
FspBI	CTAG	3 cut(s)	251, 366, 722
GluI	GCNGC	6 cut(s)	99, 288, 291, 1096, 1099, 1164
HaeIII	GGCC	2 cut(s)	356, 516
HapII	CCGG	4 cut(s)	84, 321, 824, 865
HgaI	GACGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	8 cut(s)	76, 194, 236, 617, 707, 821, 872, 1142
HinfI	GANTC	8 cut(s)	37, 130, 236, 271, 428, 557, 759, 1030
HpaII	CCGG	4 cut(s)	84, 321, 824, 865
HphI	GGTGA	3 cut(s)	73, 734, 1163
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	5 cut(s)	166, 276, 297, 503, 562
Hpy188III	TCNNGA	5 cut(s)	251, 614, 783, 989, 1139
Hpy8I	GTNNAC	1 cut(s)	763
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	5 cut(s)	74, 411, 599, 1045, 1148
HpyCH4III	ACNGT	2 cut(s)	116, 521
HpyCH4IV	ACGT	2 cut(s)	600, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	478, 937, 1020, 1107
HpyF3I	CTNAG	3 cut(s)	180, 351, 587
HpySE526I	ACGT	2 cut(s)	600, 915
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	8 cut(s)	76, 194, 236, 617, 707, 821, 872, 1142
Kzo9I	GATC	3 cut(s)	21, 544, 901
LmnI	GCTCC	4 cut(s)	20, 332, 478, 1092
Lsp1109I	GCAGC	5 cut(s)	110, 302, 1082, 1110, 1175
LweI	GCATC	6 cut(s)	60, 438, 556, 658, 1088, 1150
MaeI	CTAG	3 cut(s)	251, 366, 722
MaeII	ACGT	2 cut(s)	600, 915
MaeIII	GTNAC	2 cut(s)	740, 963
MalI	GATC	3 cut(s)	23, 546, 903
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	3 cut(s)	21, 544, 901
MboII	GAAGA	6 cut(s)	16, 179, 196, 575, 634, 968
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	2 cut(s)	21, 901
MlsI	TGGCCA	1 cut(s)	516
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	3 cut(s)	124, 768, 1024
MmeI	TCCRAC	2 cut(s)	456, 555
MnlI	CCTC	5 cut(s)	414, 462, 596, 838, 841
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	2 cut(s)	240, 638
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	3 cut(s)	396, 924, 1128
MslI	CAYNNNNRTG	2 cut(s)	945, 1005
Msp20I	TGGCCA	1 cut(s)	516
MspA1I	CMGCKG	2 cut(s)	1101, 1166
MspI	CCGG	4 cut(s)	84, 321, 824, 865
MunI	CAATTG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	478, 937, 1020, 1107
NdeII	GATC	3 cut(s)	21, 544, 901
NlaIII	CATG	8 cut(s)	76, 194, 236, 617, 707, 821, 872, 1142
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	740, 963
NspI	RCATGY	3 cut(s)	76, 707, 872
PaeI	GCATGC	2 cut(s)	76, 872
PagI	TCATGA	2 cut(s)	613, 1138
PciI	ACATGT	1 cut(s)	703
PdmI	GAANNNNTTC	2 cut(s)	240, 638
PfeI	GAWTC	5 cut(s)	37, 236, 271, 428, 557
PkrI	GCNGC	6 cut(s)	100, 289, 292, 1097, 1100, 1165
PleI	GAGTC	3 cut(s)	124, 767, 1024
PpsI	GAGTC	3 cut(s)	124, 767, 1024
PscI	ACATGT	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	924
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	785
PstI	CTGCAG	3 cut(s)	474, 655, 1100
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	21, 901
PvuII	CAGCTG	1 cut(s)	1166
RsaI	GTAC	4 cut(s)	702, 727, 815, 860
RsaNI	GTAC	4 cut(s)	701, 726, 814, 859
RseI	CAYNNNNRTG	2 cut(s)	945, 1005
SaqAI	TTAA	3 cut(s)	396, 924, 1128
SatI	GCNGC	6 cut(s)	99, 288, 291, 1096, 1099, 1164
Sau3AI	GATC	3 cut(s)	21, 544, 901
Sau96I	GGNCC	1 cut(s)	785
ScaI	AGTACT	1 cut(s)	860
SchI	GAGTC	3 cut(s)	124, 768, 1024
SfaNI	GCATC	6 cut(s)	60, 438, 556, 658, 1088, 1150
SfcI	CTRYAG	4 cut(s)	223, 470, 651, 1096
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	2 cut(s)	945, 1005
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
SphI	GCATGC	2 cut(s)	76, 872
SsiI	CCGC	6 cut(s)	27, 57, 287, 333, 481, 1101
SspMI	CTAG	3 cut(s)	251, 366, 722
TaaI	ACNGT	2 cut(s)	116, 521
TaiI	ACGT	2 cut(s)	603, 918
TaqI	TCGA	4 cut(s)	128, 133, 547, 996
TatI	WGTACW	2 cut(s)	700, 858
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	5 cut(s)	37, 236, 271, 428, 557
Tru1I	TTAA	3 cut(s)	396, 924, 1128
Tru9I	TTAA	3 cut(s)	396, 924, 1128
TscAI	CASTG	2 cut(s)	406, 526
TseFI	GTSAC	2 cut(s)	740, 963
TseI	GCWGC	5 cut(s)	98, 290, 1095, 1098, 1163
Tsp45I	GTSAC	2 cut(s)	740, 963
TspDTI	ATGAA	9 cut(s)	17, 249, 630, 791, 834, 969, 1023, 1127, 1155
TspRI	CASTG	2 cut(s)	406, 526
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	1 cut(s)	636
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	3 cut(s)	76, 707, 872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	538, 1044
XmiI	GTMKAC	1 cut(s)	762
XmnI	GAANNNNTTC	2 cut(s)	240, 638
XspI	CTAG	3 cut(s)	251, 366, 722
ZrmI	AGTACT	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.