Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Forward (+)

55107038 .. 55110101

Gene Structure 3064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG465400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAGAACCGAAGCTCCAGCAAGATCTCCGCAAAATGGATTCCCATTTTCTGTATACCCTCTTTCTTTATCGGCATGCTCATCACAAGCAGAATGTGGGCGGTACCTGAATCCACCGGTCAGCTCATTTCGACTCGTCGTCAAGAGCAAGAGCTTCAAATTGTATCTGAAGATTGCGAAACTAAGAAGAAGCTTGGACAAGAGAAGGATGTGTTGAACGAAATCTACAAAACCCACGAGTCAATTCAATCTCTAGACAAGCAAATGGCGTCAATTCAGATGGAACTAGCGGCAGCTCGGAGTTCTAAAGAGATGGGGGTCTCTGATGACTCCACCGCCACGTCAGTATTGCAGAAGGACAATTCAGCCAAGAAGAAAGCATTGGACAATTCAGCCAAGAAGAAAGCATTTATTGTCATTGGAATTAACACTGCTTTTAGTAGTAGGAAGCGGCGAGATTCGGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTACAGTTGGAGCGTGAGAAGGGGATTGTTATCCGTTTCATGATTGGCCACAGTGCAACATCCAACAGCATTTTAGATCGAGCCATTGATTCAGAAGAATCTCAACACAAGGATTTCCTCAGGCTGGAACACGTTGAAGGTTATCATGAGTTGTCTGCCAAAACAAAAACTTTCTTCACCACTGCAGTTGCAAAGTGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTGGGCATGCTAGCTTCAACTCTTGCCCATCATCGTTCAAAGCCTAGAGTATACATTGGCTGCATGAAATCTGGACCTGTTCTTGCTCAAAAGAGTGTTAAGTACCATGAACCAGAGCACTGGAAGTTTGGTGAGGCGGGAAACAAATACTTCCGACATGCAACTGGACAGATTTATGCAATCTCCAAGGATCTAGCTACATACATCTCCATTAACCAACCCATATTGCATAAGTATGCCAATGAAGATGTGTCTCTTGGTTCGTGGTTCATTGGTCTTGAAGTTGAACACATTGACGAGCGCAATATGTGTTGTGGCACTCCACCAGATTGTGAGTGGAAGGCACAGGCAGGTAATGTGTGCATTGCATCATTTGATTGGAGCTGCAGTGGTATCTGCAAGTCAGTGGAGAAGATTAAATTTGTTCACGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGGGTTCGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

405

Amino Acids

45.64

Weight (kDa)

8.21

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	10 - 102	3.1e-33	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	150 - 346	1.1e-48	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1082
Acc65I	GGTACC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	2 cut(s)	55, 792
AciI	CCGC	6 cut(s)	30, 101, 290, 336, 451, 878
AclWI	GGATC	1 cut(s)	939
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	1160
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	3 cut(s)	105, 732, 845
AfiI	CCNNNNNNNGG	2 cut(s)	36, 622
AflIII	ACRYGT	2 cut(s)	628, 733
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	8 cut(s)	158, 217, 248, 635, 759, 780, 1022, 1028
AhdI	GACNNNNNGTC	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AloI	GAACNNNNNNTCC	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	3 cut(s)	325, 464, 999
AlwI	GGATC	1 cut(s)	939
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	4 cut(s)	293, 801, 1125, 1193
ApoI	RAATTY	1 cut(s)	1160
AsiGI	ACCGGT	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	1044
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	3 cut(s)	667, 884, 1193
AsuNHI	GCTAGC	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	815
AxyI	CCTNAGG	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	4 cut(s)	305, 788, 1112, 1205
BccI	CCATC	3 cut(s)	274, 307, 777
BcoDI	GTCTC	3 cut(s)	325, 464, 999
BfaI	CTAG	6 cut(s)	254, 287, 752, 786, 935, 1216
BfmI	CTRYAG	3 cut(s)	500, 681, 1126
BfuAI	ACCTGC	1 cut(s)	1082
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	6 cut(s)	291, 294, 452, 802, 1126, 1194
BlsI	GCNGC	6 cut(s)	292, 295, 453, 803, 1127, 1195
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	4 cut(s)	468, 688, 1118, 1180
BmtI	GCTAGC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	927
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1114, 1144
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 622
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	866, 910
Bse21I	CCTNAGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	1104
Bse8I	GATNNNNATC	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	927
BseGI	GGATG	6 cut(s)	214, 483, 557, 703, 727, 1195
BseJI	GATNNNNATC	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	36, 622
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	2 cut(s)	866, 910
BseXI	GCAGC	4 cut(s)	305, 788, 1112, 1205
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	103
BshTI	ACCGGT	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	36, 622
BsmAI	GTCTC	3 cut(s)	325, 464, 999
BsnI	GGCC	1 cut(s)	546
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	3 cut(s)	24, 574, 931
BspACI	CCGC	6 cut(s)	30, 101, 290, 336, 451, 878
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	630
BspHI	TCATGA	2 cut(s)	537, 643
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	685, 1130
BspMI	ACCTGC	1 cut(s)	1082
BspOI	GCTAGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	939
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	1104
BsrFI	RCCGGY	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	866, 910
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	927
BssMI	GATC	3 cut(s)	24, 574, 931
BssNAI	GTATAC	2 cut(s)	56, 793
BssNI	GRCGYC	1 cut(s)	269
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	927
Bst1107I	GTATAC	2 cut(s)	56, 793
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	504, 551
BstACI	GRCGYC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	77, 749, 753
BstDEI	CTNAG	2 cut(s)	183, 617
BstF5I	GGATG	6 cut(s)	214, 483, 557, 703, 727, 1195
BstHHI	GCGC	1 cut(s)	1044
BstKTI	GATC	3 cut(s)	27, 577, 934
BstMAI	GTCTC	3 cut(s)	325, 464, 999
BstMBI	GATC	3 cut(s)	24, 574, 931
BstNSI	RCATGY	4 cut(s)	79, 737, 751, 902
BstSFI	CTRYAG	3 cut(s)	500, 681, 1126
BstV1I	GCAGC	4 cut(s)	305, 788, 1112, 1205
BstX2I	RGATCY	2 cut(s)	24, 931
BstXI	CCANNNNNNTGG	1 cut(s)	861
BstYI	RGATCY	2 cut(s)	24, 931
BstZ17I	GTATAC	2 cut(s)	56, 793
Bsu36I	CCTNAGG	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	6 cut(s)	214, 483, 557, 703, 727, 1195
BtsI	GCAGTG	3 cut(s)	429, 678, 1135
BtsIMutI	CAGTG	6 cut(s)	429, 556, 678, 859, 1135, 1152
BveI	ACCTGC	1 cut(s)	1082
Cac8I	GCNNGC	3 cut(s)	77, 749, 753
CciI	TCATGA	2 cut(s)	537, 643
CfoI	GCGC	1 cut(s)	1044
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	815
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	3 cut(s)	104, 731, 844
CspAI	ACCGGT	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	8 cut(s)	76, 538, 644, 734, 748, 805, 848, 899
CviQI	GTAC	3 cut(s)	104, 731, 844
DdeI	CTNAG	2 cut(s)	183, 617
DpnI	GATC	3 cut(s)	26, 576, 933
DpnII	GATC	3 cut(s)	24, 574, 931
DriI	GACNNNNNGTC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	544
Eam1105I	GACNNNNNGTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	927
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	8 cut(s)	79, 541, 647, 737, 751, 808, 851, 902
FatI	CATG	8 cut(s)	75, 537, 643, 733, 747, 804, 847, 898
FauI	CCCGC	1 cut(s)	871
FblI	GTMKAC	2 cut(s)	55, 792
Fnu4HI	GCNGC	6 cut(s)	291, 294, 452, 802, 1126, 1194
FokI	GGATG	6 cut(s)	221, 490, 544, 710, 734, 1202
Fsp4HI	GCNGC	6 cut(s)	291, 294, 452, 802, 1126, 1194
FspBI	CTAG	6 cut(s)	254, 287, 752, 786, 935, 1216
GlaI	GCGC	1 cut(s)	1043
GluI	GCNGC	6 cut(s)	291, 294, 452, 802, 1126, 1194
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	1044
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	8 cut(s)	79, 541, 647, 737, 751, 808, 851, 902
Hin6I	GCGC	1 cut(s)	1042
HinP1I	GCGC	1 cut(s)	1042
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	8 cut(s)	40, 110, 133, 239, 329, 458, 587, 596
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	3 cut(s)	667, 884, 1193
Hpy166II	GTNNAC	3 cut(s)	56, 793, 1168
Hpy188I	TCNGA	6 cut(s)	169, 279, 300, 325, 592, 896
Hpy188III	TCNNGA	7 cut(s)	143, 254, 538, 644, 813, 1019, 1169
Hpy8I	GTNNAC	3 cut(s)	56, 793, 1168
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	6 cut(s)	199, 349, 511, 629, 1075, 1178
HpyCH4III	ACNGT	2 cut(s)	504, 551
HpyCH4IV	ACGT	2 cut(s)	341, 630
HpyF3I	CTNAG	2 cut(s)	183, 617
HpySE526I	ACGT	2 cut(s)	341, 630
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	8 cut(s)	79, 541, 647, 737, 751, 808, 851, 902
HspAI	GCGC	1 cut(s)	1042
KpnI	GGTACC	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	24, 574, 931
LmnI	GCTCC	3 cut(s)	20, 508, 1122
Lsp1109I	GCAGC	4 cut(s)	305, 788, 1112, 1205
LweI	GCATC	4 cut(s)	468, 688, 1118, 1180
MaeI	CTAG	6 cut(s)	254, 287, 752, 786, 935, 1216
MaeII	ACGT	2 cut(s)	341, 630
MalI	GATC	3 cut(s)	26, 576, 933
MboI	GATC	3 cut(s)	24, 574, 931
MboII	GAAGA	9 cut(s)	16, 182, 199, 385, 412, 605, 664, 998, 1165
MflI	RGATCY	2 cut(s)	24, 931
MhlI	GDGCHC	1 cut(s)	861
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	8 cut(s)	159, 243, 273, 361, 388, 423, 739, 1160
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	3 cut(s)	127, 248, 323
MmeI	TCCRAC	3 cut(s)	486, 585, 919
MnlI	CCTC	4 cut(s)	70, 492, 626, 868
Mox20I	TGGCCA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	4 cut(s)	426, 840, 954, 1158
MslI	CAYNNNNRTG	1 cut(s)	975
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	1196
MspI	CCGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	24, 574, 931
NheI	GCTAGC	1 cut(s)	751
NlaIII	CATG	8 cut(s)	79, 541, 647, 737, 751, 808, 851, 902
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	4 cut(s)	79, 737, 751, 902
PaeI	GCATGC	2 cut(s)	79, 751
PagI	TCATGA	2 cut(s)	537, 643
PciI	ACATGT	1 cut(s)	733
PfeI	GAWTC	5 cut(s)	40, 110, 458, 587, 596
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	6 cut(s)	292, 295, 453, 803, 1127, 1195
PleI	GAGTC	3 cut(s)	127, 247, 323
PpsI	GAGTC	3 cut(s)	127, 247, 323
PscI	ACATGT	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	815
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PstI	CTGCAG	2 cut(s)	685, 1130
PsuI	RGATCY	2 cut(s)	24, 931
PvuII	CAGCTG	1 cut(s)	1196
RsaI	GTAC	3 cut(s)	105, 732, 845
RsaNI	GTAC	3 cut(s)	104, 731, 844
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	4 cut(s)	426, 840, 954, 1158
SatI	GCNGC	6 cut(s)	291, 294, 452, 802, 1126, 1194
Sau3AI	GATC	3 cut(s)	24, 574, 931
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	3 cut(s)	127, 248, 323
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	4 cut(s)	468, 688, 1118, 1180
SfcI	CTRYAG	3 cut(s)	500, 681, 1126
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
SphI	GCATGC	2 cut(s)	79, 751
Sse9I	AATT	8 cut(s)	159, 243, 273, 361, 388, 423, 739, 1160
SsiI	CCGC	6 cut(s)	30, 101, 290, 336, 451, 878
SspMI	CTAG	6 cut(s)	254, 287, 752, 786, 935, 1216
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	2 cut(s)	504, 551
TaiI	ACGT	2 cut(s)	344, 633
TaqI	TCGA	2 cut(s)	131, 577
TasI	AATT	8 cut(s)	159, 243, 273, 361, 388, 423, 739, 1160
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	2 cut(s)	293, 454
TfiI	GAWTC	5 cut(s)	40, 110, 458, 587, 596
Tru1I	TTAA	4 cut(s)	426, 840, 954, 1158
Tru9I	TTAA	4 cut(s)	426, 840, 954, 1158
TscAI	CASTG	6 cut(s)	436, 556, 685, 866, 1135, 1152
TseI	GCWGC	4 cut(s)	293, 801, 1125, 1193
TspDTI	ATGAA	6 cut(s)	17, 526, 821, 864, 999, 1000
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	6 cut(s)	436, 556, 685, 866, 1135, 1152
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	1160
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	4 cut(s)	79, 737, 751, 902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1074
XmiI	GTMKAC	2 cut(s)	55, 792
XspI	CTAG	6 cut(s)	254, 287, 752, 786, 935, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.