Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Forward (+)

28691489 .. 28694430

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAGAACCGAAGCTCCGGCAAGATCTCAGCGAAATGGATTCCCATTTTCTGCGTACCCTCTTTCCTTCTCGGCATGCTCATCACCAGCAGGATGTGGGCTGTACCTGAATCCAACGGTCAGCTCATTTCTACTCGTCGGCAGGAGCAGGAGCTTCAGATTGTGTCCGAAGATTGCGCGACTAAGAAGAAGCTGGGACAAGAGAAGGATGTGATGAATGAGATTTACAAAACCCACGAGTCAATTCAGCGTATCAGATCTTTAGACAAGCAAATGGCGTCAATTCAGATGGAGTTAGCAGCAGCTCGGAGTTCTCAGGAGATGGGGGTCTCCGGTGACTCCGCTGCCACCTCAGTGTTGCAGAAGGACAATTCAGCTAAGCAGAAGGCATTTATTGTGATTGGAATTAACACTGCATTTAGTAGTAGGAAGCGGCGAGATTCGGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTACAGTTGGAGCGTGAGAAGGGGATTGTTATCCGTTTCATGATTGGCCACAGTGCAACATCCAACAGCATTTTAGATCGAGCCATTGATTCAGAAGAATCTCAACATAAGGATTTCCTCAGGCTGGAACATGTTGAAGGTTATCATGAGTTGTCAGCCAAAACAAAAACTTTCTTCACCACTGCAGTTGCAAAGTGGGATGCTGACTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTGGGTATGCTAGCTTCAACTCTTGCCCATCATCGTTCAAAGCCTAGAGTATACATTGGGTGTATGAAATCTGGACCTGTTCTTGCTCAAAAGAGTCTTAAGTACCATGAACCAGAGCACTGGAAGTTTGGTGAGGCGGGAAACAAATACTTCCGACATGCAACTGGGCAGATTTATGCAATCTCCAGGGATCTAGCTACATACATCTCTATTAACCAGCCCATATTGCATAAGTATGCCAATGAAGATGTGTCTCTTGGTTCGTGGTTCATTGGTCTTGAAGTTGAACACATTGATGAGCGCAATATGTGTTGTGGCACTCCACCAGATTGCGAGTGGAAGGCACAGGCAGGAAATGTCTGCATTGCATCATTTGATTGGAGCTGCAGTGGTATCTGCAAGTCAGTGGAGAAGATTAAATTTGTTCATGAAAAGTGTGGTGAAGGGGATGCAGCTGTTTGGGGTTCGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

400

Amino Acids

44.96

Weight (kDa)

8.23

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	10 - 105	3.4e-32	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	144 - 340	6.8e-49	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	774
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	342, 433, 860
AclWI	GGATC	1 cut(s)	921
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	1142
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	4 cut(s)	57, 105, 714, 827
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	1 cut(s)	821
AflIII	ACRYGT	2 cut(s)	610, 715
AgsI	TTSAA	5 cut(s)	617, 741, 762, 1004, 1010
AjnI	CCWGG	1 cut(s)	908
AleI	CACNNNNGTG	1 cut(s)	353
AloI	GAACNNNNNNTCC	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	3 cut(s)	334, 446, 981
AlwI	GGATC	1 cut(s)	921
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	5 cut(s)	299, 302, 344, 1107, 1175
ApoI	RAATTY	1 cut(s)	1142
AspLEI	GCGC	2 cut(s)	179, 1026
AspS9I	GGNCC	1 cut(s)	797
AsuHPI	GGTGA	5 cut(s)	76, 347, 649, 866, 1175
AsuNHI	GCTAGC	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	797
AxyI	CCTNAGG	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	721, 753
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	5 cut(s)	311, 314, 331, 1094, 1187
BccI	CCATC	3 cut(s)	283, 316, 759
BciT130I	CCWGG	1 cut(s)	910
BcoDI	GTCTC	3 cut(s)	334, 446, 981
BfaI	CTAG	4 cut(s)	734, 768, 917, 1198
BfmI	CTRYAG	3 cut(s)	482, 663, 1108
BfrI	CTTAAG	1 cut(s)	821
BglII	AGATCT	2 cut(s)	24, 257
BisI	GCNGC	6 cut(s)	300, 303, 345, 434, 1108, 1176
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	6 cut(s)	301, 304, 346, 435, 1109, 1177
Bme1390I	CCNGG	1 cut(s)	910
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	797
BmrFI	CCNGG	1 cut(s)	910
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	4 cut(s)	450, 670, 1100, 1162
BmtI	GCTAGC	1 cut(s)	737
BmuI	ACTGGG	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	892
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	909
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1096, 1126
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	848, 892
Bse21I	CCTNAGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	1086
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	910
BseDI	CCNNGG	1 cut(s)	909
BseGI	GGATG	7 cut(s)	99, 214, 465, 539, 685, 709, 1177
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	4 cut(s)	42, 329, 366, 613
BseNI	ACTGG	2 cut(s)	848, 892
BseXI	GCAGC	5 cut(s)	311, 314, 331, 1094, 1187
BseYI	CCCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	18, 333
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	3 cut(s)	334, 446, 981
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	528
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp1407I	TGTACA	1 cut(s)	712
Bsp143I	GATC	4 cut(s)	24, 257, 556, 913
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	3 cut(s)	342, 433, 860
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	4 cut(s)	41, 328, 365, 612
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	3 cut(s)	519, 625, 1150
BspMAI	CTGCAG	2 cut(s)	667, 1112
BspOI	GCTAGC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	921
BspTI	CTTAAG	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	1086
BsrGI	TGTACA	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	848, 892
BssECI	CCNNGG	1 cut(s)	909
BssMI	GATC	4 cut(s)	24, 257, 556, 913
BssNAI	GTATAC	1 cut(s)	775
BssNI	GRCGYC	1 cut(s)	278
BssSI	CACGAG	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	775
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	910
Bst4CI	ACNGT	3 cut(s)	119, 486, 533
BstACI	GRCGYC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	821
BstAUI	TGTACA	1 cut(s)	712
BstC8I	GCNNGC	2 cut(s)	77, 735
BstDEI	CTNAG	6 cut(s)	28, 183, 315, 352, 378, 599
BstF5I	GGATG	7 cut(s)	99, 214, 465, 539, 685, 709, 1177
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	179, 1026
BstKTI	GATC	4 cut(s)	27, 260, 559, 916
BstMAI	GTCTC	3 cut(s)	334, 446, 981
BstMBI	GATC	4 cut(s)	24, 257, 556, 913
BstMWI	GCNNNNNNNGC	1 cut(s)	949
BstNI	CCWGG	1 cut(s)	910
BstNSI	RCATGY	4 cut(s)	79, 614, 719, 884
BstSCI	CCNGG	1 cut(s)	908
BstSFI	CTRYAG	3 cut(s)	482, 663, 1108
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	5 cut(s)	311, 314, 331, 1094, 1187
BstX2I	RGATCY	3 cut(s)	24, 257, 913
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	3 cut(s)	24, 257, 913
BstZ17I	GTATAC	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	528
BtsCI	GGATG	7 cut(s)	99, 214, 465, 539, 685, 709, 1177
BtsI	GCAGTG	3 cut(s)	411, 660, 1117
BtsIMutI	CAGTG	7 cut(s)	360, 411, 538, 660, 841, 1117, 1134
Cac8I	GCNNGC	2 cut(s)	77, 735
CciI	TCATGA	3 cut(s)	519, 625, 1150
CfoI	GCGC	2 cut(s)	179, 1026
Cfr13I	GGNCC	1 cut(s)	797
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	4 cut(s)	56, 104, 713, 826
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	8 cut(s)	76, 520, 611, 626, 716, 830, 881, 1151
CviQI	GTAC	4 cut(s)	56, 104, 713, 826
DdeI	CTNAG	6 cut(s)	28, 183, 315, 352, 378, 599
DpnI	GATC	4 cut(s)	26, 259, 558, 915
DpnII	GATC	4 cut(s)	24, 257, 556, 913
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	908
FaeI	CATG	8 cut(s)	79, 523, 614, 629, 719, 833, 884, 1154
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	8 cut(s)	75, 519, 610, 625, 715, 829, 880, 1150
FauI	CCCGC	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	6 cut(s)	300, 303, 345, 434, 1108, 1176
FokI	GGATG	7 cut(s)	106, 221, 472, 526, 692, 716, 1184
Fsp4HI	GCNGC	6 cut(s)	300, 303, 345, 434, 1108, 1176
FspBI	CTAG	4 cut(s)	734, 768, 917, 1198
GlaI	GCGC	2 cut(s)	178, 1025
GluI	GCNGC	6 cut(s)	300, 303, 345, 434, 1108, 1176
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	892
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	2 cut(s)	18, 333
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	2 cut(s)	179, 1026
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	8 cut(s)	79, 523, 614, 629, 719, 833, 884, 1154
Hin6I	GCGC	2 cut(s)	177, 1024
HinP1I	GCGC	2 cut(s)	177, 1024
HinfI	GANTC	8 cut(s)	40, 110, 239, 338, 440, 569, 578, 817
HpaII	CCGG	2 cut(s)	18, 333
HphI	GGTGA	5 cut(s)	76, 347, 649, 866, 1175
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	7 cut(s)	159, 169, 257, 288, 309, 574, 878
Hpy188III	TCNNGA	6 cut(s)	317, 520, 626, 795, 1001, 1151
Hpy8I	GTNNAC	1 cut(s)	775
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	8 cut(s)	77, 199, 358, 379, 493, 611, 1057, 1160
HpyCH4III	ACNGT	3 cut(s)	119, 486, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	949
HpyF3I	CTNAG	6 cut(s)	28, 183, 315, 352, 378, 599
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	8 cut(s)	79, 523, 614, 629, 719, 833, 884, 1154
HspAI	GCGC	2 cut(s)	177, 1024
Kzo9I	GATC	4 cut(s)	24, 257, 556, 913
LmnI	GCTCC	5 cut(s)	20, 145, 151, 490, 1104
Lsp1109I	GCAGC	5 cut(s)	311, 314, 331, 1094, 1187
LweI	GCATC	4 cut(s)	450, 670, 1100, 1162
MaeI	CTAG	4 cut(s)	734, 768, 917, 1198
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	4 cut(s)	26, 259, 558, 915
MboI	GATC	4 cut(s)	24, 257, 556, 913
MboII	GAAGA	7 cut(s)	16, 182, 199, 587, 646, 980, 1147
MflI	RGATCY	3 cut(s)	24, 257, 913
MhlI	GDGCHC	1 cut(s)	843
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	6 cut(s)	243, 282, 370, 405, 721, 1142
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	3 cut(s)	248, 332, 826
MmeI	TCCRAC	4 cut(s)	138, 468, 567, 901
MnlI	CCTC	5 cut(s)	70, 361, 474, 608, 850
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	4 cut(s)	408, 822, 936, 1140
MslI	CAYNNNNRTG	3 cut(s)	353, 957, 1017
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	344, 1178
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	2 cut(s)	18, 333
MspR9I	CCNGG	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	910
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	949
NdeII	GATC	4 cut(s)	24, 257, 556, 913
NheI	GCTAGC	1 cut(s)	733
NlaIII	CATG	8 cut(s)	79, 523, 614, 629, 719, 833, 884, 1154
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	4 cut(s)	79, 614, 719, 884
OliI	CACNNNNGTG	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	79
PagI	TCATGA	3 cut(s)	519, 625, 1150
PciI	ACATGT	2 cut(s)	610, 715
PfeI	GAWTC	5 cut(s)	40, 110, 440, 569, 578
PkrI	GCNGC	6 cut(s)	301, 304, 346, 435, 1109, 1177
PleI	GAGTC	3 cut(s)	247, 332, 825
PpsI	GAGTC	3 cut(s)	247, 332, 825
PscI	ACATGT	2 cut(s)	610, 715
Psp6I	CCWGG	1 cut(s)	908
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	908
PspPI	GGNCC	1 cut(s)	797
PstI	CTGCAG	2 cut(s)	667, 1112
PsuI	RGATCY	3 cut(s)	24, 257, 913
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	4 cut(s)	57, 105, 714, 827
RsaNI	GTAC	4 cut(s)	56, 104, 713, 826
RseI	CAYNNNNRTG	3 cut(s)	353, 957, 1017
SaqAI	TTAA	4 cut(s)	408, 822, 936, 1140
SatI	GCNGC	6 cut(s)	300, 303, 345, 434, 1108, 1176
Sau3AI	GATC	4 cut(s)	24, 257, 556, 913
Sau96I	GGNCC	1 cut(s)	797
SchI	GAGTC	3 cut(s)	248, 332, 826
ScrFI	CCNGG	1 cut(s)	910
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	4 cut(s)	450, 670, 1100, 1162
SfcI	CTRYAG	3 cut(s)	482, 663, 1108
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	3 cut(s)	353, 957, 1017
SmlI	CTYRAG	2 cut(s)	465, 821
SmoI	CTYRAG	2 cut(s)	465, 821
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	6 cut(s)	243, 282, 370, 405, 721, 1142
SsiI	CCGC	3 cut(s)	342, 433, 860
SspMI	CTAG	4 cut(s)	734, 768, 917, 1198
StyD4I	CCNGG	1 cut(s)	908
TaaI	ACNGT	3 cut(s)	119, 486, 533
TaqI	TCGA	1 cut(s)	559
TasI	AATT	6 cut(s)	243, 282, 370, 405, 721, 1142
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	5 cut(s)	40, 110, 440, 569, 578
Tru1I	TTAA	4 cut(s)	408, 822, 936, 1140
Tru9I	TTAA	4 cut(s)	408, 822, 936, 1140
TscAI	CASTG	7 cut(s)	360, 418, 538, 667, 848, 1117, 1134
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	5 cut(s)	299, 302, 344, 1107, 1175
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	9 cut(s)	17, 230, 508, 803, 846, 981, 982, 1139, 1167
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	7 cut(s)	360, 418, 538, 667, 848, 1117, 1134
Vha464I	CTTAAG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	1 cut(s)	1142
XceI	RCATGY	4 cut(s)	79, 614, 719, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1056
XmiI	GTMKAC	1 cut(s)	774
XspI	CTAG	4 cut(s)	734, 768, 917, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.