Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010888.1

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

16750 .. 20547

Gene Structure 3798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010888.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgaagaaccgaagctccagcaagatctccgcaaaatggattcccattttctgcataccctccttttttctcggcatgctgatcaccagcagaatgtgggcggtacctgaatcgaacggtcagctcatttcgactcgtcgtcacgagcaagagcttcaaattgtatctgaagattgcgaaactaagaagaagcttggacaagagaaggatgtgatgaccgaaatctacaaaacccacgagtcaattcaatctctagacaagcaaatggcgtcaattcagatggaactagcggcagctcggagttctaaagagatgggggtctctgatgactccaccgccacgtcagtattgcagaaggacaattcagccaagaagaaagcatttattgttattggaattaacactgcttttagtagtaggaagcggcgagattcggttagagagacttggatgcctcaaggggaaaagctactacagttggagcgtgagaaggggattgttatccgtttcatgattggccacagtgcaacatccaacagcattttagatcgagccattgattcagaagaatctcaacacaaggatttcctcaggctggaacacgttgaaggttatcatgagttgtctgccaaaacaaaaactttcttcaccactgcagttgcaaagtgggatgctgatttttatgtcaaggtggatgatgatgtacatgtcaatttgggcatgctagcttcaactcttgcccatcatcgttcaaagcctagagtatacattggctgcatgaaatctggacctgttcttgctcaaaagagtgttaagtaccatgaaccagagcactggaagtttggtgaggcgggaaacaaatacttccgacatgcaactggacagatttatgcaatctccaaggatctagctacatacatctccattaaccaacccatattgcataagtatgccaatgaagatgtgtctcttggttcgtggttcattggtcttgaagttgaacacattgacgagcgcaatatgtgttgtggcactccaccagattgtgagtggaaggcacaggcaggtaatgtgtgcattgcatcatttgattggagctgcagtggtatctgcaagtcagtggagaagattaaatttgttcacgaaaagtgtggtgaaggggatgcagctgtttggggttcgttgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

396

Amino Acids

44.71

Weight (kDa)

7.61

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1055
Acc65I	GGTACC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	6 cut(s)	30, 101, 290, 336, 424, 851
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	1133
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	3 cut(s)	105, 705, 818
AfiI	CCNNNNNNNGG	2 cut(s)	36, 595
AflIII	ACRYGT	2 cut(s)	601, 706
AgsI	TTSAA	7 cut(s)	158, 248, 608, 732, 753, 995, 1001
AhdI	GACNNNNNGTC	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	342
AloI	GAACNNNNNNTCC	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	3 cut(s)	325, 437, 972
AlwI	GGATC	1 cut(s)	912
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	4 cut(s)	293, 774, 1098, 1166
ApoI	RAATTY	1 cut(s)	1133
Asp718I	GGTACC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	1017
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	4 cut(s)	76, 640, 857, 1166
AsuNHI	GCTAGC	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	103
BauI	CACGAG	2 cut(s)	143, 236
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	4 cut(s)	305, 761, 1085, 1178
BccI	CCATC	3 cut(s)	274, 307, 750
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	325, 437, 972
BfaI	CTAG	6 cut(s)	254, 287, 725, 759, 908, 1189
BfmI	CTRYAG	3 cut(s)	473, 654, 1099
BfuAI	ACCTGC	1 cut(s)	1055
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	6 cut(s)	291, 294, 425, 775, 1099, 1167
BlsI	GCNGC	6 cut(s)	292, 295, 426, 776, 1100, 1168
Bme18I	GGWCC	1 cut(s)	788
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	4 cut(s)	441, 661, 1091, 1153
BmtI	GCTAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	900
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1087, 1117
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 595
Bse1I	ACTGG	2 cut(s)	839, 883
Bse21I	CCTNAGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	1077
Bse8I	GATNNNNATC	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	6 cut(s)	214, 456, 530, 676, 700, 1168
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	36, 595
BseMI	GCAATG	1 cut(s)	1077
BseMII	CTCAG	1 cut(s)	604
BseNI	ACTGG	2 cut(s)	839, 883
BseXI	GCAGC	4 cut(s)	305, 761, 1085, 1178
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	834
BslI	CCNNNNNNNGG	2 cut(s)	36, 595
BsmAI	GTCTC	3 cut(s)	325, 437, 972
BsnI	GGCC	1 cut(s)	519
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	4 cut(s)	24, 81, 547, 904
BspACI	CCGC	6 cut(s)	30, 101, 290, 336, 424, 851
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	603
BspHI	TCATGA	2 cut(s)	510, 616
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	658, 1103
BspMI	ACCTGC	1 cut(s)	1055
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	912
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	1077
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	2 cut(s)	839, 883
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	4 cut(s)	24, 81, 547, 904
BssNAI	GTATAC	1 cut(s)	766
BssNI	GRCGYC	1 cut(s)	269
BssSI	CACGAG	2 cut(s)	143, 236
BssT1I	CCWWGG	1 cut(s)	900
Bst1107I	GTATAC	1 cut(s)	766
Bst2BI	CACGAG	2 cut(s)	143, 236
Bst4CI	ACNGT	3 cut(s)	119, 477, 524
BstACI	GRCGYC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	77, 722, 726
BstDEI	CTNAG	2 cut(s)	183, 590
BstF5I	GGATG	6 cut(s)	214, 456, 530, 676, 700, 1168
BstHHI	GCGC	1 cut(s)	1017
BstKTI	GATC	4 cut(s)	27, 84, 550, 907
BstMAI	GTCTC	3 cut(s)	325, 437, 972
BstMBI	GATC	4 cut(s)	24, 81, 547, 904
BstNSI	RCATGY	4 cut(s)	79, 710, 724, 875
BstSFI	CTRYAG	3 cut(s)	473, 654, 1099
BstV1I	GCAGC	4 cut(s)	305, 761, 1085, 1178
BstX2I	RGATCY	2 cut(s)	24, 904
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	2 cut(s)	24, 904
BstZ17I	GTATAC	1 cut(s)	766
Bsu36I	CCTNAGG	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	6 cut(s)	214, 456, 530, 676, 700, 1168
BtsI	GCAGTG	3 cut(s)	402, 651, 1108
BtsIMutI	CAGTG	6 cut(s)	402, 529, 651, 832, 1108, 1125
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	3 cut(s)	77, 722, 726
CciI	TCATGA	2 cut(s)	510, 616
CfoI	GCGC	1 cut(s)	1017
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	3 cut(s)	104, 704, 817
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	8 cut(s)	76, 511, 617, 707, 721, 778, 821, 872
CviQI	GTAC	3 cut(s)	104, 704, 817
DdeI	CTNAG	2 cut(s)	183, 590
DpnI	GATC	4 cut(s)	26, 83, 549, 906
DpnII	GATC	4 cut(s)	24, 81, 547, 904
DriI	GACNNNNNGTC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	517
Eam1105I	GACNNNNNGTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	900
ErhI	CCWWGG	1 cut(s)	900
FaeI	CATG	8 cut(s)	79, 514, 620, 710, 724, 781, 824, 875
FatI	CATG	8 cut(s)	75, 510, 616, 706, 720, 777, 820, 871
FauI	CCCGC	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	6 cut(s)	291, 294, 425, 775, 1099, 1167
FokI	GGATG	6 cut(s)	221, 463, 517, 683, 707, 1175
Fsp4HI	GCNGC	6 cut(s)	291, 294, 425, 775, 1099, 1167
FspBI	CTAG	6 cut(s)	254, 287, 725, 759, 908, 1189
GlaI	GCGC	1 cut(s)	1016
GluI	GCNGC	6 cut(s)	291, 294, 425, 775, 1099, 1167
HaeIII	GGCC	1 cut(s)	519
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	1017
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	8 cut(s)	79, 514, 620, 710, 724, 781, 824, 875
Hin6I	GCGC	1 cut(s)	1015
HinP1I	GCGC	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	8 cut(s)	40, 110, 133, 239, 329, 431, 560, 569
HphI	GGTGA	4 cut(s)	76, 640, 857, 1166
Hpy166II	GTNNAC	2 cut(s)	766, 1141
Hpy188I	TCNGA	6 cut(s)	169, 279, 300, 325, 565, 869
Hpy188III	TCNNGA	7 cut(s)	143, 254, 511, 617, 786, 992, 1142
Hpy8I	GTNNAC	2 cut(s)	766, 1141
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	6 cut(s)	199, 349, 484, 602, 1048, 1151
HpyCH4III	ACNGT	3 cut(s)	119, 477, 524
HpyCH4IV	ACGT	2 cut(s)	341, 603
HpyF3I	CTNAG	2 cut(s)	183, 590
HpySE526I	ACGT	2 cut(s)	341, 603
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	8 cut(s)	79, 514, 620, 710, 724, 781, 824, 875
HspAI	GCGC	1 cut(s)	1015
KpnI	GGTACC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	24, 81, 547, 904
LmnI	GCTCC	3 cut(s)	20, 481, 1095
Lsp1109I	GCAGC	4 cut(s)	305, 761, 1085, 1178
LweI	GCATC	4 cut(s)	441, 661, 1091, 1153
MaeI	CTAG	6 cut(s)	254, 287, 725, 759, 908, 1189
MaeII	ACGT	2 cut(s)	341, 603
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	26, 83, 549, 906
MboI	GATC	4 cut(s)	24, 81, 547, 904
MboII	GAAGA	8 cut(s)	16, 182, 199, 385, 578, 637, 971, 1138
MflI	RGATCY	2 cut(s)	24, 904
MhlI	GDGCHC	1 cut(s)	834
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	7 cut(s)	159, 243, 273, 361, 396, 712, 1133
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	3 cut(s)	127, 248, 323
MmeI	TCCRAC	3 cut(s)	459, 558, 892
MnlI	CCTC	4 cut(s)	70, 465, 599, 841
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	4 cut(s)	399, 813, 927, 1131
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	1169
NdeII	GATC	4 cut(s)	24, 81, 547, 904
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	8 cut(s)	79, 514, 620, 710, 724, 781, 824, 875
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	4 cut(s)	79, 710, 724, 875
PaeI	GCATGC	2 cut(s)	79, 724
PagI	TCATGA	2 cut(s)	510, 616
PciI	ACATGT	1 cut(s)	706
PfeI	GAWTC	5 cut(s)	40, 110, 431, 560, 569
PkrI	GCNGC	6 cut(s)	292, 295, 426, 776, 1100, 1168
PleI	GAGTC	3 cut(s)	127, 247, 323
PpsI	GAGTC	3 cut(s)	127, 247, 323
PscI	ACATGT	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	788
PstI	CTGCAG	2 cut(s)	658, 1103
PsuI	RGATCY	2 cut(s)	24, 904
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	3 cut(s)	105, 705, 818
RsaNI	GTAC	3 cut(s)	104, 704, 817
RseI	CAYNNNNRTG	1 cut(s)	948
SaqAI	TTAA	4 cut(s)	399, 813, 927, 1131
SatI	GCNGC	6 cut(s)	291, 294, 425, 775, 1099, 1167
Sau3AI	GATC	4 cut(s)	24, 81, 547, 904
Sau96I	GGNCC	1 cut(s)	788
SchI	GAGTC	3 cut(s)	127, 248, 323
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	4 cut(s)	441, 661, 1091, 1153
SfcI	CTRYAG	3 cut(s)	473, 654, 1099
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SphI	GCATGC	2 cut(s)	79, 724
Sse9I	AATT	7 cut(s)	159, 243, 273, 361, 396, 712, 1133
SsiI	CCGC	6 cut(s)	30, 101, 290, 336, 424, 851
SspMI	CTAG	6 cut(s)	254, 287, 725, 759, 908, 1189
StyI	CCWWGG	1 cut(s)	900
TaaI	ACNGT	3 cut(s)	119, 477, 524
TaiI	ACGT	2 cut(s)	344, 606
TaqI	TCGA	3 cut(s)	113, 131, 550
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	7 cut(s)	159, 243, 273, 361, 396, 712, 1133
TatI	WGTACW	1 cut(s)	703
TauI	GCSGC	2 cut(s)	293, 427
TfiI	GAWTC	5 cut(s)	40, 110, 431, 560, 569
Tru1I	TTAA	4 cut(s)	399, 813, 927, 1131
Tru9I	TTAA	4 cut(s)	399, 813, 927, 1131
TscAI	CASTG	6 cut(s)	409, 529, 658, 839, 1108, 1125
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	293, 774, 1098, 1166
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	6 cut(s)	17, 499, 794, 837, 972, 973
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	6 cut(s)	409, 529, 658, 839, 1108, 1125
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	1 cut(s)	1133
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	4 cut(s)	79, 710, 724, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1047
XmiI	GTMKAC	1 cut(s)	765
XspI	CTAG	6 cut(s)	254, 287, 725, 759, 908, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.