Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010888.1

Orthogroup ID

OG0008476

Physical Location & Seq

Genomic Coordinates Reverse (-)

12506 .. 15485

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010888.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atggagaacgccgacgtcttcaccgggctgcacgaatttctcgaacgcatgcgtcaaccgtcggccagcgacttcgtcaagtctatcaaaagtttcattgtgtcgttcacgaacagttctcctgatccagagagggacagtgctgcggtgcagaacttctttgcgcaaatggaagtggattttagggttcatccactttgggctggttgttctgaagaggagcttgatagtgctggcgagggactggagaagtatgtcatgacaaagttatttactcgtgtatttgcttcacttccagatgatgtaaaacttgacaacatactacatgagaagatggctttggttcaacaattcattcgaccagaaaatttggatattcaggccccctttcaaaatgaaacatcatggctgcttgcacagaaagaactgcaaaagatcaatatgtacaaggcaccaagggacaagcttgtgtgtatcctcaattgttgcaaggttatcaataacttgctgctcaatgcttctattgcttcaaatgagaatcctcccggagctgatgaatttcttcctgtcttaatttatgttactttgaaggcaaaccctccgcaactgcactcaaatttgttgtatatacaaagatacaggcgacaatctcgattggtagcagaagcagcctatttcttcacaaacatgctctctgtcgaatccttcatttcaaatattgatgcgaaagccctgtcaatggatgaaactgagtttgaaaagaacatggaatctgctcgagcaattctatcaggactctcaactgatttgaacagccagcctagtcaaagcggccaacctgtgaatataaacaaggagccaacagcactgcccaaatcgtcaaaagttccatcactttcagatttggaggataagggtgcagcactccttgtaaacgatgagcaggcaagccaggttttccggcagtatccatacttgtttgcgcatgttggtgatctaacagtcaatgatgtagaagaccttcttaataattacaaacagcttgttttcaagtatgtttgtctctccaaaggattaggtgattctgctccatctcttcctctaaggagttcagaaacacaggatcaccagcatgctgaaactgcaaagcaacaggaccatactagagctgtagagcctaatgatgagccatcaaaggatactgatagaaaggatgatggttcaacagattctctttttgaagtggaaagtttagaatctaaattgtcagaggatcaaacagtagcaccacaagatagtaaacatgaaggaatctggtttttcttggctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007049 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0017016 GO:0017048 GO:0019899 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0051020 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071840 GO:0090696 GO:0098772 GO:0099402 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VPS9

Protein Analysis

444

Amino Acids

49.92

Weight (kDa)

4.77

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19770 AT3G19770 AT5G09320
fragaria_vesca	FvH4_5g38820 FvH4_5g38820
malus_domestica	MD00G1104300.v1.1 MD15G1358700.v1.1
prunus_persica	Prupe.1G506400_v2.0.a1 Prupe.1G506400_v2.0.a1
pyrus_communis	pycom08g14820 pycom15g32120
rosa_chinensis	RchiOBHm_Chr7g0240821
rosa_laevigata	RLG00000000622
rosa_multiflora	Rmu_sc0004821.1_g000014 Rmu_sc0010888.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219600
rosa_rugosa	Rorug07G0339300 Rorug07G0339300
rosa_samantha	Rh7AG493500 Rh7BG465500 Rh7CG512000 Rh7DG478700
rosa_wichuraiana	Rw7G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
Acc16I	TGCGCA	2 cut(s)	165, 984
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	3 cut(s)	146, 602, 831
AclWI	GGATC	3 cut(s)	119, 1131, 1281
AcoI	YGGCCR	2 cut(s)	63, 832
AcsI	RAATTY	4 cut(s)	35, 367, 557, 616
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	739
AjnI	CCWGG	1 cut(s)	951
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	5 cut(s)	223, 466, 551, 1042, 1169
AluI	AGCT	5 cut(s)	223, 466, 551, 1042, 1169
Alw26I	GTCTC	1 cut(s)	1067
AlwI	GGATC	3 cut(s)	119, 1131, 1281
Ama87I	CYCGRG	1 cut(s)	777
AoxI	GGCC	3 cut(s)	63, 381, 832
ApeKI	GCWGC	6 cut(s)	28, 143, 409, 508, 668, 920
ApoI	RAATTY	4 cut(s)	35, 367, 557, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
Asp700I	GAANNNNTTC	2 cut(s)	561, 1020
AspLEI	GCGC	2 cut(s)	166, 985
AspS9I	GGNCC	2 cut(s)	382, 1156
AsuC2I	CCSGG	2 cut(s)	25, 546
AsuHPI	GGTGA	4 cut(s)	13, 1004, 1091, 1118
AvaI	CYCGRG	1 cut(s)	777
AvaII	GGWCC	1 cut(s)	1156
BanI	GGYRCC	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	1005, 1037
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	10, 1023
BbvI	GCAGC	6 cut(s)	15, 130, 396, 495, 680, 932
BccI	CCATC	5 cut(s)	328, 898, 1099, 1198, 1211
BciT130I	CCWGG	1 cut(s)	953
BciVI	GTATCC	3 cut(s)	485, 978, 1192
BcnI	CCSGG	2 cut(s)	25, 546
BcoDI	GTCTC	1 cut(s)	1067
BfaI	CTAG	2 cut(s)	822, 1164
BfmI	CTRYAG	1 cut(s)	1170
BfuI	GTATCC	3 cut(s)	485, 978, 1192
BisI	GCNGC	7 cut(s)	29, 144, 410, 509, 669, 832, 921
BlsI	GCNGC	7 cut(s)	30, 145, 411, 510, 670, 833, 922
Bme1390I	CCNGG	3 cut(s)	25, 546, 953
Bme18I	GGWCC	1 cut(s)	1156
BmeT110I	CYCGRG	1 cut(s)	777
BmgT120I	GGNCC	2 cut(s)	382, 1156
BmiI	GGNNCC	3 cut(s)	384, 453, 858
BmrFI	CCNGG	3 cut(s)	25, 546, 953
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	2 cut(s)	10, 1023
BpmI	CTGGAG	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	25, 546
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	953
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	3 cut(s)	190, 748, 1219
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	6 cut(s)	15, 130, 396, 495, 680, 932
BsgI	GTGCAG	4 cut(s)	14, 170, 593, 939
BshFI	GGCC	3 cut(s)	65, 383, 834
BshNI	GGYRCC	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	777
BsiSI	CCGG	3 cut(s)	24, 546, 961
BslFI	GGGAC	3 cut(s)	149, 255, 473
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	1067
BsmFI	GGGAC	3 cut(s)	149, 255, 473
BsnI	GGCC	3 cut(s)	65, 383, 834
BsoBI	CYCGRG	1 cut(s)	777
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	5 cut(s)	124, 435, 994, 1123, 1273
BspACI	CCGC	3 cut(s)	146, 602, 831
BspANI	GGCC	3 cut(s)	65, 383, 834
BspCNI	CTCAG	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	384, 453, 858
BspPI	GGATC	3 cut(s)	119, 1131, 1281
BspT107I	GGYRCC	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	5 cut(s)	124, 435, 994, 1123, 1273
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	953
Bst4CI	ACNGT	5 cut(s)	60, 116, 140, 1003, 1282
Bst6I	CTCTTC	2 cut(s)	210, 1101
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	8 cut(s)	50, 67, 235, 414, 818, 945, 949, 1134
BstDEI	CTNAG	2 cut(s)	750, 1103
BstF5I	GGATG	3 cut(s)	190, 748, 1219
BstHHI	GCGC	2 cut(s)	166, 985
BstKTI	GATC	5 cut(s)	127, 438, 997, 1126, 1276
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	5 cut(s)	124, 435, 994, 1123, 1273
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 668, 1142
BstNI	CCWGG	1 cut(s)	953
BstNSI	RCATGY	4 cut(s)	52, 691, 989, 1136
BstSCI	CCNGG	3 cut(s)	23, 544, 951
BstSFI	CTRYAG	1 cut(s)	1170
BstV1I	GCAGC	6 cut(s)	15, 130, 396, 495, 680, 932
BstV2I	GAAGAC	2 cut(s)	10, 1023
BsuI	GTATCC	3 cut(s)	485, 978, 1192
BsuRI	GGCC	3 cut(s)	65, 383, 834
BtsCI	GGATG	3 cut(s)	190, 748, 1219
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	2 cut(s)	145, 866
Cac8I	GCNNGC	8 cut(s)	50, 67, 235, 414, 818, 945, 949, 1134
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	2 cut(s)	166, 985
Cfr13I	GGNCC	2 cut(s)	382, 1156
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	9 cut(s)	49, 259, 326, 405, 688, 766, 986, 1133, 1304
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	750, 1103
DpnI	GATC	5 cut(s)	126, 437, 996, 1125, 1275
DpnII	GATC	5 cut(s)	124, 435, 994, 1123, 1273
EaeI	YGGCCR	2 cut(s)	63, 832
Eam1104I	CTCTTC	2 cut(s)	210, 1101
EarI	CTCTTC	2 cut(s)	210, 1101
Eco130I	CCWWGG	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	1156
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	777
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	951
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	9 cut(s)	52, 262, 329, 408, 691, 769, 989, 1136, 1307
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 1008, 1040
FaqI	GGGAC	3 cut(s)	149, 255, 473
FatI	CATG	9 cut(s)	48, 258, 325, 404, 687, 765, 985, 1132, 1303
Fnu4HI	GCNGC	7 cut(s)	29, 144, 410, 509, 669, 832, 921
FokI	GGATG	3 cut(s)	177, 755, 1226
Fsp4HI	GCNGC	7 cut(s)	29, 144, 410, 509, 669, 832, 921
FspBI	CTAG	2 cut(s)	822, 1164
FspI	TGCGCA	2 cut(s)	165, 984
GlaI	GCGC	2 cut(s)	165, 984
GluI	GCNGC	7 cut(s)	29, 144, 410, 509, 669, 832, 921
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	65, 383, 834
HapII	CCGG	3 cut(s)	24, 546, 961
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	166, 985
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	9 cut(s)	52, 262, 329, 408, 691, 769, 989, 1136, 1307
Hin6I	GCGC	2 cut(s)	164, 983
HinP1I	GCGC	2 cut(s)	164, 983
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	8 cut(s)	538, 701, 770, 795, 1082, 1229, 1256, 1311
HpaII	CCGG	3 cut(s)	24, 546, 961
HphI	GGTGA	4 cut(s)	13, 1004, 1091, 1118
Hpy166II	GTNNAC	4 cut(s)	56, 108, 934, 1301
Hpy188I	TCNGA	4 cut(s)	214, 901, 1114, 1270
Hpy188III	TCNNGA	8 cut(s)	41, 109, 122, 128, 259, 296, 651, 792
Hpy8I	GTNNAC	4 cut(s)	56, 108, 934, 1301
Hpy99I	CGWCG	2 cut(s)	17, 64
HpyAV	CCTTC	4 cut(s)	583, 715, 1031, 1301
HpyCH4III	ACNGT	5 cut(s)	60, 116, 140, 1003, 1282
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	8 cut(s)	31, 151, 416, 430, 489, 610, 920, 1145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 668, 1142
HpyF3I	CTNAG	2 cut(s)	750, 1103
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	9 cut(s)	52, 262, 329, 408, 691, 769, 989, 1136, 1307
HspAI	GCGC	2 cut(s)	164, 983
Kzo9I	GATC	5 cut(s)	124, 435, 994, 1123, 1273
LmnI	GCTCC	4 cut(s)	220, 548, 856, 1093
Lsp1109I	GCAGC	6 cut(s)	15, 130, 396, 495, 680, 932
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	2 cut(s)	822, 1164
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	5 cut(s)	126, 437, 996, 1125, 1275
MboI	GATC	5 cut(s)	124, 435, 994, 1123, 1273
MboII	GAAGA	7 cut(s)	10, 227, 343, 554, 670, 1028, 1088
MfeI	CAATTG	1 cut(s)	481
MlyI	GAGTC	1 cut(s)	789
MnlI	CCTC	9 cut(s)	126, 211, 232, 488, 552, 609, 901, 1110, 1264
MroXI	GAANNNNTTC	2 cut(s)	561, 1020
MseI	TTAA	2 cut(s)	572, 1026
MslI	CAYNNNNRTG	3 cut(s)	686, 990, 1131
MspI	CCGG	3 cut(s)	24, 546, 961
MspR9I	CCNGG	3 cut(s)	25, 546, 953
MunI	CAATTG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	953
MwoI	GCNNNNNNNGC	3 cut(s)	524, 668, 1142
NciI	CCSGG	2 cut(s)	25, 546
NdeII	GATC	5 cut(s)	124, 435, 994, 1123, 1273
NlaIII	CATG	9 cut(s)	52, 262, 329, 408, 691, 769, 989, 1136, 1307
NlaIV	GGNNCC	3 cut(s)	384, 453, 858
NsbI	TGCGCA	2 cut(s)	165, 984
NspI	RCATGY	4 cut(s)	52, 691, 989, 1136
PaeI	GCATGC	2 cut(s)	52, 1136
PaeR7I	CTCGAG	1 cut(s)	777
PagI	TCATGA	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	561, 1020
PfeI	GAWTC	7 cut(s)	538, 701, 770, 1082, 1229, 1256, 1311
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	7 cut(s)	30, 145, 411, 510, 670, 833, 922
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	951
PspGI	CCWGG	1 cut(s)	951
PspN4I	GGNNCC	3 cut(s)	384, 453, 858
PspPI	GGNCC	2 cut(s)	382, 1156
PspXI	VCTCGAGB	1 cut(s)	777
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	3 cut(s)	686, 990, 1131
SaqAI	TTAA	2 cut(s)	572, 1026
SatI	GCNGC	7 cut(s)	29, 144, 410, 509, 669, 832, 921
Sau3AI	GATC	5 cut(s)	124, 435, 994, 1123, 1273
Sau96I	GGNCC	2 cut(s)	382, 1156
SchI	GAGTC	1 cut(s)	789
ScrFI	CCNGG	3 cut(s)	25, 546, 953
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	1170
Sfr274I	CTCGAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	1156
SlaI	CTCGAG	1 cut(s)	777
SmiMI	CAYNNNNRTG	3 cut(s)	686, 990, 1131
SmlI	CTYRAG	1 cut(s)	777
SmoI	CTYRAG	1 cut(s)	777
SphI	GCATGC	2 cut(s)	52, 1136
SsiI	CCGC	3 cut(s)	146, 602, 831
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	2 cut(s)	822, 1164
StyD4I	CCNGG	3 cut(s)	23, 544, 951
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	5 cut(s)	60, 116, 140, 1003, 1282
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	5 cut(s)	42, 358, 652, 699, 778
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	834
TfiI	GAWTC	7 cut(s)	538, 701, 770, 1082, 1229, 1256, 1311
Tru1I	TTAA	2 cut(s)	572, 1026
Tru9I	TTAA	2 cut(s)	572, 1026
TscAI	CASTG	2 cut(s)	145, 873
TseI	GCWGC	6 cut(s)	28, 143, 409, 508, 668, 920
TspDTI	ATGAA	8 cut(s)	85, 179, 343, 411, 570, 697, 759, 1320
TspRI	CASTG	2 cut(s)	145, 873
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	1156
XapI	RAATTY	4 cut(s)	35, 367, 557, 616
XceI	RCATGY	4 cut(s)	52, 691, 989, 1136
XhoI	CTCGAG	1 cut(s)	777
XmnI	GAANNNNTTC	2 cut(s)	561, 1020
XspI	CTAG	2 cut(s)	822, 1164
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.