Prupe.1G506400_v2.0.a1

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
41822523 .. 41826923
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G506400.1

Sequence Viewer

Length: 1482 bp
ATGGAGAACGCCGATGTGTTCTTGGGCCTGCAGGACTTTCTTGAACGAATGCGTCAACCGACCGCCGCTGATTTCGTCAAGTCCATAAAAAGTTTCATAGTATCGTTTTCGAACAATGCTCCTGATCCAGAGAGGGACAGTGCTGCGGTGCAGGACTTCTTTGCCCAAATGGAAATGGATTTTAGGGCTCATCCACTTTGGGCTGGTTGTTCAGAAGAGGAGCTCGACAGTGCTGGCGAAGGACTGGAGAAGTATGTCATGACAAAGTTATTTCCTCGTGTATTTGCTTCAGTTCCGGATGATGTAAAACTTGATGACCAACTGTATGAGAAGATGGCTTTAGTACAACAATTCATTCGACCGGAGAATTTGGATATTAAGCCCACATTTCAAAATGAAACATCATGGCTGCTTGCTCAGAAAGAACTGCAAAAGATCAATATGTACAAGGCACCCAGGGATAAGCTTGTGTGTATCCTCAATTGTTGCAAGGTTATCAATAACTTGTTGCTGAATGCTTCTGTTGCTTCAAATGAGAATCCCCCAGGAGCTGATGAATTTCTTCCCGTCCTAATTTATGTTACTTTAAAGGCAAACCCTCCACAACTGCACTCAAATTTATTGTATATACAAAGGTACAGGCGACAATCTCGATTAGTTGGTGAAACAGCCTATTTTTTCACAAACATGCTCTCTGTGGAGTCCTTCATCTCAAATATTGATGCAAAATCCATTTCAATGGATGAAACTGAGTTTGAAAAGAACATGGAAACTGCTCGAGCACTTCTTTCAGGACTTTCAACTGATTTGGACAGTCAGTATAATCAAAGCGGTCAATATGCAGGATATGTACATAGATCAGAATCTATGGAACCCAGACATCAACCTTTGAATGCCAACAAGGATTCTGCACAACCCAAATCTTCTGAAAGAAAATCCCGAGCGAAAAATATACCCTATGGTGCAAAAGATAATTTATCCTTTTCAAAAATTCCATCCCTTTCAGATTTGGAGGATAAGGGCGCGACAATCCTTGTAAATGATGATAAGGCGAGCCAGGTCTTCCGGGAGTATCCATACTTGTTTGCGCATGTTGGTGATCTAACACTCAATGATGTAGAAGACCTCCTTAATAATTACAAACAACTTGTTTTCAAGTATGTTTGTCTTTCCAAAGGGTTAGGCGTTGCTGCTCCATCTCTTCCTGTATCAAGTTCACAAACAGAGTTCCACCAGCATGCTGAAACGGCAAAGAAACAGGATCACTCTAGAGCTATAGAGCCTAATGATGAAGTATCAAATGATAGTAATAGGAATGATGGTTCTCTAGAGCCTAATGATGAAGCATCAAATGATACTAATAGAAAGGATGATGGTTCAATTAAAGAGCCTCTTATCGATTTGGATAATTTGCAATCCCTATTGTCACAGGATCAAGCAGTTGCACCACAGGGTGGTAAACACGAGGAGTCTTCTCAATAA

Protein Analysis

494

Amino Acids

55.4

Weight (kDa)

4.85

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1089
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 1454
AccII CGCG 1 cut(s) 1025
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 4 cut(s) 63, 66, 146, 831
AclWI GGATC 3 cut(s) 119, 1269, 1440
AcsI RAATTY 4 cut(s) 367, 557, 616, 990
AcuI CTGAAG 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 1454
AfaI GTAC 4 cut(s) 345, 446, 638, 852
AfiI CCNNNNNNNGG 1 cut(s) 1454
AjnI CCWGG 3 cut(s) 455, 544, 1056
AloI GAACNNNNNNTCC 2 cut(s) 1306, 1338
AluBI AGCT 4 cut(s) 223, 466, 551, 1274
AluI AGCT 4 cut(s) 223, 466, 551, 1274
Alw21I GWGCWC 2 cut(s) 225, 784
AlwI GGATC 3 cut(s) 119, 1269, 1440
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 2 cut(s) 777, 939
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 3 cut(s) 143, 409, 1190
ApoI RAATTY 4 cut(s) 367, 557, 616, 990
Asp700I GAANNNNTTC 1 cut(s) 561
AspLEI GCGC 2 cut(s) 1025, 1090
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 1067
AsuHPI GGTGA 2 cut(s) 674, 1109
AsuII TTCGAA 1 cut(s) 110
AvaI CYCGRG 2 cut(s) 777, 939
BanI GGYRCC 1 cut(s) 451
BanII GRGCYC 2 cut(s) 190, 225
BauI CACGAG 2 cut(s) 276, 1463
BbsI GAAGAC 3 cut(s) 1054, 1128, 1464
Bbv12I GWGCWC 2 cut(s) 225, 784
BbvI GCAGC 3 cut(s) 130, 396, 1177
BccI CCATC 5 cut(s) 328, 1003, 1204, 1313, 1367
BceAI ACGGC 1 cut(s) 1263
BciT130I CCWGG 3 cut(s) 457, 546, 1058
BciVI GTATCC 2 cut(s) 485, 1083
BcnI CCSGG 1 cut(s) 1067
BfaI CTAG 2 cut(s) 1269, 1328
BfmI CTRYAG 2 cut(s) 29, 1275
BfuI GTATCC 2 cut(s) 485, 1083
BisI GCNGC 4 cut(s) 66, 144, 410, 1191
BlsI GCNGC 4 cut(s) 67, 145, 411, 1192
Bme1390I CCNGG 4 cut(s) 457, 546, 1058, 1067
BmeT110I CYCGRG 2 cut(s) 777, 939
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 453, 873
BmrFI CCNGG 4 cut(s) 457, 546, 1058, 1067
BmsI GCATC 2 cut(s) 712, 1355
BpiI GAAGAC 3 cut(s) 1054, 1128, 1464
BpmI CTGGAG 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 1067
Bsa29I ATCGAT 1 cut(s) 1398
BsaBI GATNNNNATC 1 cut(s) 862
BsaJI CCNNGG 3 cut(s) 455, 456, 544
BsaWI WCCGGW 2 cut(s) 295, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 1454
Bse1I ACTGG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 862
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 3 cut(s) 457, 546, 1058
BseCI ATCGAT 1 cut(s) 1398
BseDI CCNNGG 3 cut(s) 455, 456, 544
BseGI GGATG 5 cut(s) 190, 304, 748, 995, 1375
BseJI GATNNNNATC 1 cut(s) 862
BseLI CCNNNNNNNGG 1 cut(s) 1454
BseMII CTCAG 2 cut(s) 431, 741
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 233, 1481
BseXI GCAGC 3 cut(s) 130, 396, 1177
BsgI GTGCAG 3 cut(s) 170, 593, 894
Bsh1236I CGCG 1 cut(s) 1025
Bsh1285I CGRYCG 2 cut(s) 63, 362
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 451
BshVI ATCGAT 1 cut(s) 1398
BsiEI CGRYCG 2 cut(s) 63, 362
BsiHKAI GWGCWC 2 cut(s) 225, 784
BsiHKCI CYCGRG 2 cut(s) 777, 939
BsiSI CCGG 3 cut(s) 296, 362, 1066
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 1454
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 3 cut(s) 54, 520, 898
BsnI GGCC 1 cut(s) 27
BsoBI CYCGRG 2 cut(s) 777, 939
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 190, 225, 784
Bsp13I TCCGGA 1 cut(s) 295
Bsp1407I TGTACA 2 cut(s) 444, 850
Bsp143I GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
BspACI CCGC 4 cut(s) 63, 66, 146, 831
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 430, 742
BspDI ATCGAT 1 cut(s) 1398
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 1 cut(s) 1025
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 453, 873
BspMAI CTGCAG 1 cut(s) 33
BspPI GGATC 3 cut(s) 119, 1269, 1440
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 451
BsrGI TGTACA 2 cut(s) 444, 850
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 455, 456, 544
BssMI GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
BssSI CACGAG 2 cut(s) 276, 1463
Bst2BI CACGAG 2 cut(s) 276, 1463
Bst2UI CCWGG 3 cut(s) 457, 546, 1058
Bst4CI ACNGT 4 cut(s) 140, 230, 324, 815
Bst6I CTCTTC 2 cut(s) 210, 1206
BstAUI TGTACA 2 cut(s) 444, 850
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 5 cut(s) 29, 235, 414, 1054, 1239
BstDEI CTNAG 2 cut(s) 417, 750
BstF5I GGATG 5 cut(s) 190, 304, 748, 995, 1375
BstFNI CGCG 1 cut(s) 1025
BstHHI GCGC 2 cut(s) 1025, 1090
BstKTI GATC 6 cut(s) 127, 438, 860, 1102, 1264, 1435
BstMBI GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
BstMCI CGRYCG 2 cut(s) 63, 362
BstMWI GCNNNNNNNGC 2 cut(s) 524, 1247
BstNI CCWGG 3 cut(s) 457, 546, 1058
BstNSI RCATGY 3 cut(s) 691, 1094, 1241
BstSCI CCNGG 4 cut(s) 455, 544, 1056, 1065
BstSFI CTRYAG 2 cut(s) 29, 1275
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 3 cut(s) 130, 396, 1177
BstV2I GAAGAC 3 cut(s) 1054, 1128, 1464
BstXI CCANNNNNNTGG 1 cut(s) 739
Bsu15I ATCGAT 1 cut(s) 1398
BsuI GTATCC 2 cut(s) 485, 1083
BsuRI GGCC 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 1398
BtsCI GGATG 5 cut(s) 190, 304, 748, 995, 1375
BtsIMutI CAGTG 2 cut(s) 145, 235
Cac8I GCNNGC 5 cut(s) 29, 235, 414, 1054, 1239
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 258
CfoI GCGC 2 cut(s) 1025, 1090
Cfr13I GGNCC 1 cut(s) 25
ClaI ATCGAT 1 cut(s) 1398
CseI GACGC 1 cut(s) 41
Csp6I GTAC 4 cut(s) 344, 445, 637, 851
CviAII CATG 6 cut(s) 259, 405, 688, 766, 1091, 1238
CviQI GTAC 4 cut(s) 344, 445, 637, 851
DdeI CTNAG 2 cut(s) 417, 750
DpnI GATC 6 cut(s) 126, 437, 859, 1101, 1263, 1434
DpnII GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
DraI TTTAAA 1 cut(s) 588
DraIII CACNNNGTG 1 cut(s) 1454
Eam1104I CTCTTC 2 cut(s) 210, 1206
EarI CTCTTC 2 cut(s) 210, 1206
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 190, 225
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 273
Eco88I CYCGRG 2 cut(s) 777, 939
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 3 cut(s) 455, 544, 1056
EcoT38I GRGCYC 2 cut(s) 190, 225
FaeI CATG 6 cut(s) 262, 408, 691, 769, 1094, 1241
FalI AAGNNNNNCTT 4 cut(s) 1113, 1145, 1377, 1409
FaqI GGGAC 1 cut(s) 149
FatI CATG 6 cut(s) 258, 404, 687, 765, 1090, 1237
Fnu4HI GCNGC 4 cut(s) 66, 144, 410, 1191
FokI GGATG 5 cut(s) 177, 311, 755, 982, 1382
FriOI GRGCYC 2 cut(s) 190, 225
Fsp4HI GCNGC 4 cut(s) 66, 144, 410, 1191
FspBI CTAG 2 cut(s) 1269, 1328
FspI TGCGCA 1 cut(s) 1089
GlaI GCGC 2 cut(s) 1024, 1089
GluI GCNGC 4 cut(s) 66, 144, 410, 1191
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 27
HapII CCGG 3 cut(s) 296, 362, 1066
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 1025, 1090
Hin1II CATG 6 cut(s) 262, 408, 691, 769, 1094, 1241
Hin6I GCGC 2 cut(s) 1023, 1088
HinP1I GCGC 2 cut(s) 1023, 1088
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 5 cut(s) 538, 701, 863, 905, 1469
HpaII CCGG 3 cut(s) 296, 362, 1066
HphI GGTGA 2 cut(s) 674, 1109
Hpy166II GTNNAC 3 cut(s) 56, 1217, 1460
Hpy188I TCNGA 5 cut(s) 214, 420, 862, 928, 1006
Hpy8I GTNNAC 3 cut(s) 56, 1217, 1460
HpyAV CCTTC 2 cut(s) 233, 715
HpyCH4III ACNGT 4 cut(s) 140, 230, 324, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 1247
HpyF3I CTNAG 2 cut(s) 417, 750
Hsp92II CATG 6 cut(s) 262, 408, 691, 769, 1094, 1241
HspAI GCGC 2 cut(s) 1023, 1088
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
LmnI GCTCC 4 cut(s) 124, 220, 548, 1198
Lsp1109I GCAGC 3 cut(s) 130, 396, 1177
LweI GCATC 2 cut(s) 712, 1355
MaeI CTAG 2 cut(s) 1269, 1328
MaeIII GTNAC 2 cut(s) 580, 1425
MalI GATC 6 cut(s) 126, 437, 859, 1101, 1263, 1434
MboI GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
MboII GAAGA 8 cut(s) 227, 343, 554, 915, 1054, 1133, 1193, 1464
MfeI CAATTG 1 cut(s) 481
MhlI GDGCHC 3 cut(s) 190, 225, 784
MlyI GAGTC 2 cut(s) 710, 1478
MnlI CCTC 9 cut(s) 126, 211, 285, 488, 609, 1006, 1136, 1401, 1459
MroI TCCGGA 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 4 cut(s) 378, 587, 1131, 1383
MslI CAYNNNNRTG 4 cut(s) 686, 737, 1095, 1236
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 296, 362, 1066
MspR9I CCNGG 4 cut(s) 457, 546, 1058, 1067
MunI CAATTG 1 cut(s) 481
Mva1269I GAATGC 3 cut(s) 54, 520, 898
MvaI CCWGG 3 cut(s) 457, 546, 1058
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 2 cut(s) 524, 1247
NciI CCSGG 1 cut(s) 1067
NdeII GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
NlaIII CATG 6 cut(s) 262, 408, 691, 769, 1094, 1241
NlaIV GGNNCC 2 cut(s) 453, 873
NmuCI GTSAC 1 cut(s) 1425
NsbI TGCGCA 1 cut(s) 1089
NspI RCATGY 3 cut(s) 691, 1094, 1241
NspV TTCGAA 1 cut(s) 110
PaeI GCATGC 1 cut(s) 1241
PaeR7I CTCGAG 1 cut(s) 777
PagI TCATGA 1 cut(s) 258
PasI CCCWGGG 1 cut(s) 456
PctI GAATGC 3 cut(s) 54, 520, 898
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 538, 863, 905
PflMI CCANNNNNTGG 1 cut(s) 1454
PfoI TCCNGGA 1 cut(s) 1065
PkrI GCNGC 4 cut(s) 67, 145, 411, 1192
PleI GAGTC 2 cut(s) 709, 1477
PpsI GAGTC 2 cut(s) 709, 1477
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 455, 544, 1056
PspGI CCWGG 3 cut(s) 455, 544, 1056
PspN4I GGNNCC 2 cut(s) 453, 873
PspPI GGNCC 1 cut(s) 25
PspXI VCTCGAGB 1 cut(s) 777
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 4 cut(s) 345, 446, 638, 852
RsaNI GTAC 4 cut(s) 344, 445, 637, 851
RseI CAYNNNNRTG 4 cut(s) 686, 737, 1095, 1236
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 4 cut(s) 378, 587, 1131, 1383
SatI GCNGC 4 cut(s) 66, 144, 410, 1191
Sau3AI GATC 6 cut(s) 124, 435, 857, 1099, 1261, 1432
Sau96I GGNCC 1 cut(s) 25
SbfI CCTGCAGG 1 cut(s) 33
SchI GAGTC 2 cut(s) 710, 1478
ScrFI CCNGG 4 cut(s) 457, 546, 1058, 1067
SdaI CCTGCAGG 1 cut(s) 33
SduI GDGCHC 3 cut(s) 190, 225, 784
SetI ASST 9 cut(s) 225, 468, 495, 553, 638, 889, 1062, 1128, 1276
SfaNI GCATC 2 cut(s) 712, 1355
SfcI CTRYAG 2 cut(s) 29, 1275
Sfr274I CTCGAG 1 cut(s) 777
SfuI TTCGAA 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 777
SmiMI CAYNNNNRTG 4 cut(s) 686, 737, 1095, 1236
SmlI CTYRAG 1 cut(s) 777
SmoI CTYRAG 1 cut(s) 777
SphI GCATGC 1 cut(s) 1241
Sse8387I CCTGCAGG 1 cut(s) 33
SsiI CCGC 4 cut(s) 63, 66, 146, 831
SspI AATATT 1 cut(s) 718
SspMI CTAG 2 cut(s) 1269, 1328
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 455, 544, 1056, 1065
TaaI ACNGT 4 cut(s) 140, 230, 324, 815
TaqI TCGA 6 cut(s) 110, 225, 358, 652, 778, 1398
TatI WGTACW 3 cut(s) 343, 444, 850
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 3 cut(s) 538, 863, 905
Tru1I TTAA 4 cut(s) 378, 587, 1131, 1383
Tru9I TTAA 4 cut(s) 378, 587, 1131, 1383
TscAI CASTG 2 cut(s) 145, 235
TseFI GTSAC 1 cut(s) 1425
TseI GCWGC 3 cut(s) 143, 409, 1190
Tsp45I GTSAC 1 cut(s) 1425
TspDTI ATGAA 8 cut(s) 85, 343, 411, 570, 697, 759, 1305, 1356
TspRI CASTG 2 cut(s) 145, 235
Van91I CCANNNNNTGG 1 cut(s) 1454
XapI RAATTY 4 cut(s) 367, 557, 616, 990
XbaI TCTAGA 2 cut(s) 1268, 1327
XceI RCATGY 3 cut(s) 691, 1094, 1241
XhoI CTCGAG 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 2 cut(s) 1269, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.