MD15G1386700.v1.1
ERF Family

ARM repeat superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011419
Physical Location & Seq
Reverse (-)
47795732 .. 47798722
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1386700.v1.1.491

Sequence Viewer

Length: 1722 bp
ATGCAGCTTGTTAACTGTTGTCCTGTTCCTCCTACTCACCAACATTTTCAATTTTTTTATTTTGGTGTTTTGATGGCATATGGTGGCTTGTTAGATTTTCTAAGAGAGCAGCAACCTGCATATGCGACAACTCTGGTTCAAACTCGGTTGCTACCATTGTATAAATTATCAGTCTCCGTACCGTACTTAGTTGCCACTGCAAACTGGGTTCTTGGAGAGCTTGCTTCCTGCCTACCTGAAGAGATGAGTGCAGATGTGTATACCTCATTGCTCAAGGCATTGGTTATGCCTGATAACAGGGATATTTCTTGTTATCCCGTGCGGGTTTCTGCTGCTGCGGCAATTGTGGGACTTCTTGATAATGACTACCCACCACCTGAATGGCTTCCTCTCCTTCAAGTTGTGATTGGTAGGATTGGCAATAACGAGGAAGAAAGCTCAATTTTATTTCATCTTCTCAGTTCTGTGGTGGAGGCGGGACATGAAAATGTTGTAGTTCATATCCCTTACATTGTTTCAACATTGGTTGTTGGAATCTCAAAATGCATTCCCACTGATCTGGAGCCATGGCCTCAGATGGTTGAAAAGGGCTTTGAAGCATTAGCAGCAATAGATCAATCTTGGGAAAGTTTTACGGCTGAACAATCTGAGGAGAATGCATCGAGTGAAAAGTGGGTATCAAGTCAAGCTACCATCGGTAGAGCTTTCTCTTCTCTCTTGCAACAGGCTTGGCTTGCACTAGCACATCACTTGGGACGGGAAGACGAGGTTTTGCCCCCTTCTTCTTGCTTAGATTATGCATCAACATTGCTCCGATCCATCATGCTGTCTGTTACCGAAAGTAATGCAATTCTAGAGCTTAAAGTATCAAAGTTATTATTAGTTTGGGCTGATCTGATTGCCAACTGGCATGCTTGGGAAGAATCAGAGGATATGTCAATCTTTGAGTGCATTAAGGAAGCAGTCAGTCTACACAAAAAACATGGGTTGAAGAATTTTATTGGAGGACAAATGCCATCTCCTCCAGCTCCACCTGTTCCTCAGCCTTCCATAATACAAGGCATTGGTTCTTTTATAAGCGAGGCTGCCTTACATTATCCATCTGCAATGTGGAAGATTTGCTCTTGTATCCATATACTACTACATGCCCCAATTTACTCATCCGAGACAGAAGGCGTGAAGCAGTCGTTGGCAGTTGCATTTTGTCAGGCAACATATACCCGTTTCAGAGAAATTAAAAGCAAGCCTGGTCCTCTCTGGAAGCCTTTGCTGCTCGCTATATCATCATGCTATTTATGCTGTCCCGAAGTTGTAGAGGGTATATTGGAGAAGGATGGAGATGGAGGATTTCAAACCTGGATGTCTGCACTTGGATCTGTTTCCTCTAGCTCTTTCAAACCGGGGCTACCTACAGAGTCAGAGATAAAGTTGATTGTGCTGGCACTGGCAAAAGTGGTTGAACGGGTGGTGGTAGTTGGAAAGTCATCTGGTGCCTTGTTACGGGAATGCTTTACCTCTCTGATGGAAGCATCTATACGATGGAAAGAACTGCGGGAAGAAGAGGAAGCAGGTGGAGAAGAAGAGACCGAGGATGATGATGAAATTGAAGATGATGATGATGACGATGACGATGTGAGGTTTGAACTTGCAAGTTTTTTGTTTATCGTCAAGTTTCAGGATTCATCTTTTAAAAGTTCTCTACATTTTTGGACTGCCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 map04013
Pfam Domains
Protein Families
IBN_N

Protein Analysis

574

Amino Acids

63.44

Weight (kDa)

4.66

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17340 AT3G17340
fragaria_vesca FvH4_4g21110 FvH4_4g21110 FvH4_4g21110
malus_domestica MD15G1386700.v1.1 MD16G1139700.v1.1
prunus_persica Prupe.1G109100_v2.0.a1
pyrus_communis pycom16g12390
rosa_chinensis RchiOBHm_Chr4g0426661
rosa_laevigata RLG00000007286
rosa_multiflora Rmu_sc0001821.1_g000015
rosa_roxburghii Rroxscaffold_5G00368660
rosa_rugosa Rorug04G0214000 Rorug04G0214100
rosa_samantha Rh4AG269200 Rh4BG275500 Rh4CG290000 Rh4DG272500
rosa_wichuraiana Rw4G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AarI CACCTGC 1 cut(s) 1559
Acc36I ACCTGC 2 cut(s) 124, 1559
AccB1I GGYRCC 1 cut(s) 1490
AccI GTMKAC 2 cut(s) 260, 970
AciI CCGC 4 cut(s) 322, 338, 476, 1552
AclWI GGATC 2 cut(s) 810, 1381
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 2 cut(s) 180, 185
AfiI CCNNNNNNNGG 1 cut(s) 1500
AjnI CCWGG 2 cut(s) 1246, 1355
AjuI GAANNNNNNNTTGG 2 cut(s) 1172, 1204
AluBI AGCT 8 cut(s) 7, 220, 438, 689, 704, 859, 1028, 1389
AluI AGCT 8 cut(s) 7, 220, 438, 689, 704, 859, 1028, 1389
Alw26I GTCTC 3 cut(s) 178, 1160, 1577
AlwI GGATC 2 cut(s) 810, 1381
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 7 cut(s) 4, 109, 332, 335, 605, 1085, 1270
ApoI RAATTY 1 cut(s) 994
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 1250
AsuC2I CCSGG 1 cut(s) 1401
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 1250
BanI GGYRCC 1 cut(s) 1490
BarI GAAGNNNNNNTAC 2 cut(s) 1518, 1550
BbsI GAAGAC 1 cut(s) 768
BbvCI CCTCAGC 1 cut(s) 1041
BbvI GCAGC 7 cut(s) 16, 121, 319, 322, 617, 1072, 1257
BceAI ACGGC 1 cut(s) 651
BcgI CGANNNNNNTGC 2 cut(s) 827, 861
BciT130I CCWGG 2 cut(s) 1248, 1357
BciVI GTATCC 1 cut(s) 1139
BcnI CCSGG 1 cut(s) 1401
BcoDI GTCTC 3 cut(s) 178, 1160, 1577
BfaI CTAG 3 cut(s) 740, 854, 1386
BfmI CTRYAG 1 cut(s) 1410
BfuAI ACCTGC 2 cut(s) 124, 1559
BfuI GTATCC 1 cut(s) 1139
BisI GCNGC 8 cut(s) 5, 110, 333, 336, 339, 606, 1086, 1271
BlsI GCNGC 8 cut(s) 6, 111, 334, 337, 340, 607, 1087, 1272
Bme1390I CCNGG 3 cut(s) 1248, 1357, 1401
Bme18I GGWCC 1 cut(s) 1250
BmgT120I GGNCC 1 cut(s) 1250
BmiI GGNNCC 2 cut(s) 564, 1492
BmrFI CCNGG 3 cut(s) 1248, 1357, 1401
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 3 cut(s) 668, 809, 1538
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 2 cut(s) 581, 1008
Bpu10I CCTNAGC 1 cut(s) 1041
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 1401
BsaI GGTCTC 1 cut(s) 1577
BsaJI CCNNGG 3 cut(s) 566, 1400, 1587
Bsc4I CCNNNNNNNGG 1 cut(s) 1500
Bse1I ACTGG 3 cut(s) 209, 911, 1449
Bse3DI GCAATG 3 cut(s) 266, 806, 1113
BseBI CCWGG 2 cut(s) 1248, 1357
BseDI CCNNGG 3 cut(s) 566, 1400, 1587
BseGI GGATG 4 cut(s) 1160, 1339, 1365, 1597
BseLI CCNNNNNNNGG 1 cut(s) 1500
BseMI GCAATG 3 cut(s) 266, 806, 1113
BseMII CTCAG 4 cut(s) 472, 587, 639, 1055
BseNI ACTGG 3 cut(s) 209, 911, 1449
BseRI GAGGAG 2 cut(s) 665, 1011
BseXI GCAGC 7 cut(s) 16, 121, 319, 322, 617, 1072, 1257
BsgI GTGCAG 2 cut(s) 270, 1350
BshFI GGCC 1 cut(s) 571
BshNI GGYRCC 1 cut(s) 1490
BsiSI CCGG 1 cut(s) 1400
BslFI GGGAC 4 cut(s) 363, 492, 768, 1287
BslI CCNNNNNNNGG 1 cut(s) 1500
BsmAI GTCTC 3 cut(s) 178, 1160, 1577
BsmFI GGGAC 4 cut(s) 363, 492, 768, 1287
BsmI GAATGC 3 cut(s) 546, 661, 1511
BsnI GGCC 1 cut(s) 571
Bso31I GGTCTC 1 cut(s) 1577
Bsp143I GATC 5 cut(s) 556, 613, 815, 892, 1373
Bsp19I CCATGG 1 cut(s) 566
BspACI CCGC 4 cut(s) 322, 338, 476, 1552
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 4 cut(s) 471, 586, 640, 1054
BspLI GGNNCC 2 cut(s) 564, 1492
BspMI ACCTGC 2 cut(s) 124, 1559
BspPI GGATC 2 cut(s) 810, 1381
BspT107I GGYRCC 1 cut(s) 1490
BspTNI GGTCTC 1 cut(s) 1577
BsrDI GCAATG 3 cut(s) 266, 806, 1113
BsrI ACTGG 3 cut(s) 209, 911, 1449
BssECI CCNNGG 3 cut(s) 566, 1400, 1587
BssMI GATC 5 cut(s) 556, 613, 815, 892, 1373
BssNAI GTATAC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 566
Bst1107I GTATAC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 1248, 1357
Bst4CI ACNGT 2 cut(s) 17, 183
Bst6I CTCTTC 4 cut(s) 234, 715, 1554, 1575
BstC8I GCNNGC 6 cut(s) 222, 735, 912, 1244, 1275, 1440
BstDEI CTNAG 7 cut(s) 101, 187, 458, 573, 648, 790, 1041
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 4 cut(s) 1160, 1339, 1365, 1597
BstKTI GATC 5 cut(s) 559, 616, 818, 895, 1376
BstMAI GTCTC 3 cut(s) 178, 1160, 1577
BstMBI GATC 5 cut(s) 556, 613, 815, 892, 1373
BstMWI GCNNNNNNNGC 5 cut(s) 338, 605, 734, 1270, 1296
BstNI CCWGG 2 cut(s) 1248, 1357
BstNSI RCATGY 2 cut(s) 914, 1148
BstSCI CCNGG 3 cut(s) 1246, 1355, 1399
BstSFI CTRYAG 1 cut(s) 1410
BstV1I GCAGC 7 cut(s) 16, 121, 319, 322, 617, 1072, 1257
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 1373
BstXI CCANNNNNNTGG 2 cut(s) 381, 559
BstYI RGATCY 1 cut(s) 1373
BstZ17I GTATAC 1 cut(s) 261
BsuI GTATCC 1 cut(s) 1139
BsuRI GGCC 1 cut(s) 571
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 4 cut(s) 1160, 1339, 1365, 1597
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 195, 552, 1442
BveI ACCTGC 2 cut(s) 124, 1559
Cac8I GCNNGC 6 cut(s) 222, 735, 912, 1244, 1275, 1440
Cfr13I GGNCC 1 cut(s) 1250
Csp6I GTAC 2 cut(s) 179, 184
CviAII CATG 7 cut(s) 482, 567, 823, 911, 983, 1145, 1287
CviQI GTAC 2 cut(s) 179, 184
DdeI CTNAG 7 cut(s) 101, 187, 458, 573, 648, 790, 1041
DpnI GATC 5 cut(s) 558, 615, 817, 894, 1375
DpnII GATC 5 cut(s) 556, 613, 815, 892, 1373
DraI TTTAAA 1 cut(s) 1690
Eam1104I CTCTTC 4 cut(s) 234, 715, 1554, 1575
EarI CTCTTC 4 cut(s) 234, 715, 1554, 1575
Eco130I CCWWGG 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 1577
Eco47I GGWCC 1 cut(s) 1250
Eco57I CTGAAG 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 1246, 1355
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 3 cut(s) 548, 661, 802
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 7 cut(s) 485, 570, 826, 914, 986, 1148, 1290
FaqI GGGAC 4 cut(s) 363, 492, 768, 1287
FatI CATG 7 cut(s) 481, 566, 822, 910, 982, 1144, 1286
FauI CCCGC 3 cut(s) 315, 469, 1545
FauNDI CATATG 2 cut(s) 79, 121
FblI GTMKAC 2 cut(s) 260, 970
Fnu4HI GCNGC 8 cut(s) 5, 110, 333, 336, 339, 606, 1086, 1271
FokI GGATG 4 cut(s) 1147, 1346, 1372, 1604
Fsp4HI GCNGC 8 cut(s) 5, 110, 333, 336, 339, 606, 1086, 1271
FspBI CTAG 3 cut(s) 740, 854, 1386
GluI GCNGC 8 cut(s) 5, 110, 333, 336, 339, 606, 1086, 1271
GsuI CTGGAG 2 cut(s) 581, 1008
HaeIII GGCC 1 cut(s) 571
HapII CCGG 1 cut(s) 1400
Hin1II CATG 7 cut(s) 485, 570, 826, 914, 986, 1148, 1290
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 4 cut(s) 534, 923, 1415, 1679
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 1 cut(s) 1400
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 3 cut(s) 13, 261, 971
Hpy188I TCNGA 9 cut(s) 576, 649, 815, 897, 928, 1165, 1229, 1420, 1521
Hpy188III TCNNGA 6 cut(s) 356, 560, 854, 1258, 1304, 1676
Hpy8I GTNNAC 3 cut(s) 13, 261, 971
HpyAV CCTTC 5 cut(s) 404, 789, 1056, 1166, 1324
HpyCH4III ACNGT 2 cut(s) 17, 183
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 605, 734, 1270, 1296
HpyF3I CTNAG 7 cut(s) 101, 187, 458, 573, 648, 790, 1041
Hsp92II CATG 7 cut(s) 485, 570, 826, 914, 986, 1148, 1290
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 5 cut(s) 556, 613, 815, 892, 1373
LmnI GCTCC 3 cut(s) 562, 816, 1033
Lsp1109I GCAGC 7 cut(s) 16, 121, 319, 322, 617, 1072, 1257
LweI GCATC 3 cut(s) 668, 809, 1538
MaeI CTAG 3 cut(s) 740, 854, 1386
MaeIII GTNAC 2 cut(s) 832, 1497
MalI GATC 5 cut(s) 558, 615, 817, 894, 1375
MboI GATC 5 cut(s) 556, 613, 815, 892, 1373
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 1373
MluCI AATT 9 cut(s) 50, 164, 342, 441, 849, 994, 1152, 1233, 1602
MlyI GAGTC 1 cut(s) 1424
MmeI TCCRAC 2 cut(s) 511, 1456
Mph1103I ATGCAT 3 cut(s) 548, 661, 802
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 6 cut(s) 12, 861, 954, 1236, 1689, 1720
MslI CAYNNNNRTG 2 cut(s) 379, 486
MspI CCGG 1 cut(s) 1400
MspR9I CCNGG 3 cut(s) 1248, 1357, 1401
MunI CAATTG 1 cut(s) 342
Mva1269I GAATGC 3 cut(s) 546, 661, 1511
MvaI CCWGG 2 cut(s) 1248, 1357
MwoI GCNNNNNNNGC 5 cut(s) 338, 605, 734, 1270, 1296
NciI CCSGG 1 cut(s) 1401
NcoI CCATGG 1 cut(s) 566
NdeI CATATG 2 cut(s) 79, 121
NdeII GATC 5 cut(s) 556, 613, 815, 892, 1373
NlaIII CATG 7 cut(s) 485, 570, 826, 914, 986, 1148, 1290
NlaIV GGNNCC 2 cut(s) 564, 1492
NsiI ATGCAT 3 cut(s) 548, 661, 802
NspI RCATGY 2 cut(s) 914, 1148
PaeI GCATGC 1 cut(s) 914
PaqCI CACCTGC 1 cut(s) 1559
PctI GAATGC 3 cut(s) 546, 661, 1511
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 3 cut(s) 534, 923, 1679
PkrI GCNGC 8 cut(s) 6, 111, 334, 337, 340, 607, 1087, 1272
PleI GAGTC 1 cut(s) 1423
PpsI GAGTC 1 cut(s) 1423
PsiI TTATAA 1 cut(s) 1076
Psp6I CCWGG 2 cut(s) 1246, 1355
PspGI CCWGG 2 cut(s) 1246, 1355
PspN4I GGNNCC 2 cut(s) 564, 1492
PspPI GGNCC 1 cut(s) 1250
PsuI RGATCY 1 cut(s) 1373
RsaI GTAC 2 cut(s) 180, 185
RsaNI GTAC 2 cut(s) 179, 184
RseI CAYNNNNRTG 2 cut(s) 379, 486
SaqAI TTAA 6 cut(s) 12, 861, 954, 1236, 1689, 1720
SatI GCNGC 8 cut(s) 5, 110, 333, 336, 339, 606, 1086, 1271
Sau3AI GATC 5 cut(s) 556, 613, 815, 892, 1373
Sau96I GGNCC 1 cut(s) 1250
SchI GAGTC 1 cut(s) 1424
ScrFI CCNGG 3 cut(s) 1248, 1357, 1401
SfaNI GCATC 3 cut(s) 668, 809, 1538
SfcI CTRYAG 1 cut(s) 1410
SinI GGWCC 1 cut(s) 1250
SmiMI CAYNNNNRTG 2 cut(s) 379, 486
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SphI GCATGC 1 cut(s) 914
Sse9I AATT 9 cut(s) 50, 164, 342, 441, 849, 994, 1152, 1233, 1602
SsiI CCGC 4 cut(s) 322, 338, 476, 1552
SspMI CTAG 3 cut(s) 740, 854, 1386
StyD4I CCNGG 3 cut(s) 1246, 1355, 1399
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 2 cut(s) 17, 183
TaqI TCGA 1 cut(s) 662
TaqII GACCGA 1 cut(s) 1601
TasI AATT 9 cut(s) 50, 164, 342, 441, 849, 994, 1152, 1233, 1602
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 3 cut(s) 534, 923, 1679
Tru1I TTAA 6 cut(s) 12, 861, 954, 1236, 1689, 1720
Tru9I TTAA 6 cut(s) 12, 861, 954, 1236, 1689, 1720
TscAI CASTG 3 cut(s) 202, 559, 1449
TseI GCWGC 7 cut(s) 4, 109, 332, 335, 605, 1085, 1270
TspDTI ATGAA 5 cut(s) 440, 488, 498, 1614, 1671
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 202, 559, 1449
VpaK11BI GGWCC 1 cut(s) 1250
XapI RAATTY 1 cut(s) 994
XbaI TCTAGA 1 cut(s) 853
XceI RCATGY 2 cut(s) 914, 1148
XcmI CCANNNNNNNNNTGG 2 cut(s) 378, 1107
XmiI GTMKAC 2 cut(s) 260, 970
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 3 cut(s) 740, 854, 1386
Zsp2I ATGCAT 3 cut(s) 548, 661, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.