Rorug04G0214000
ERF Family

ARM repeat superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
37126317 .. 37126539
223 bp
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UTR
Exon/CDS
Intron
Rorug04G0214000.1

Sequence Viewer

Length: 219 bp
ATGCATGAGGTAGGAAACGAGAAACTCCAACGGGTGCGAACGCTGGGCGCATTCTGGGAGCACCCACCTTTTATGGATCCGATGCTCATGCTCATACGAGATTATATGCTTTATATCCATAAAGCAATCTGCTCTCTCGAAAAGAGGAAGGCAGCATTGCTCAAAGAACAACAAGAGCTCCTTGTGCAGGCTATCATATATCGGCGACCATCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.61

Weight (kDa)

9.3

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011419)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 71, 84
AfiI CCNNNNNNNGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 2 cut(s) 63, 180
AlwI GGATC 2 cut(s) 71, 84
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 50
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 63, 180
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfaI CTAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 63, 180
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 63, 180
Bsp143I GATC 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 2 cut(s) 71, 84
BsrDI GCAATG 1 cut(s) 155
BssMI GATC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 50
CviAII CATG 2 cut(s) 5, 88
CviJI RGCY 2 cut(s) 178, 191
CviKI_1 RGCY 2 cut(s) 178, 191
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 2 cut(s) 8, 91
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 2 cut(s) 4, 87
Fnu4HI GCNGC 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 217
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 8, 91
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 4, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
Hsp92II CATG 2 cut(s) 8, 91
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 58, 183
LpnPI CCDG 3 cut(s) 29, 40, 173
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 217
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 63, 180
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 1 cut(s) 138
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 8, 91
NlaIV GGNNCC 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 76
SacI GAGCTC 1 cut(s) 180
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 76
SduI GDGCHC 2 cut(s) 63, 180
SetI ASST 3 cut(s) 12, 70, 180
SfaNI GCATC 1 cut(s) 72
SspMI CTAG 1 cut(s) 217
SstI GAGCTC 1 cut(s) 180
TaqI TCGA 1 cut(s) 138
TseI GCWGC 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 185
XspI CTAG 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.