Rorug04G0214100
ERF Family

ARM repeat superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011419
Physical Location & Seq
Reverse (-)
37135432 .. 37136121
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0214100.1

Sequence Viewer

Length: 690 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGAAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 map04013
Pfam Domains
Protein Families
IBN_N

Protein Analysis

229

Amino Acids

25.29

Weight (kDa)

5.36

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 2.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17340 AT3G17340
fragaria_vesca FvH4_4g21110 FvH4_4g21110 FvH4_4g21110
malus_domestica MD15G1386700.v1.1 MD16G1139700.v1.1
prunus_persica Prupe.1G109100_v2.0.a1
pyrus_communis pycom16g12390
rosa_chinensis RchiOBHm_Chr4g0426661
rosa_laevigata RLG00000007286
rosa_multiflora Rmu_sc0001821.1_g000015
rosa_roxburghii Rroxscaffold_5G00368660
rosa_rugosa Rorug04G0214000 Rorug04G0214100
rosa_samantha Rh4AG269200 Rh4BG275500 Rh4CG290000 Rh4DG272500
rosa_wichuraiana Rw4G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 413
AclWI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 91, 328, 571
AfiI CCNNNNNNNGG 2 cut(s) 413, 664
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 556, 640
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 92, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 3 cut(s) 53, 199, 410
AluI AGCT 3 cut(s) 53, 199, 410
Alw21I GWGCWC 2 cut(s) 177, 665
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 50, 293
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
Asp700I GAANNNNTTC 1 cut(s) 513
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuHPI GGTGA 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 3 cut(s) 164, 306, 665
BamHI GGATCC 3 cut(s) 335, 383, 416
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 177, 665
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 2 cut(s) 395, 452
BceAI ACGGC 2 cut(s) 72, 681
BciT130I CCWGG 2 cut(s) 94, 631
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 2 cut(s) 315, 444
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 2 cut(s) 94, 631
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
BmrFI CCNGG 2 cut(s) 94, 631
BpmI CTGGAG 3 cut(s) 93, 179, 282
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 664
Bse1I ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseBI CCWGG 2 cut(s) 94, 631
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 413, 664
BseNI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseRI GAGGAG 3 cut(s) 44, 632, 635
BseSI GKGCMC 3 cut(s) 164, 306, 665
BseXI GCAGC 2 cut(s) 62, 280
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 177, 665
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 413, 664
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 177, 262, 306, 665
Bsp143I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 406
BspLI GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
BspPI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
BsrI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 631
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 9 cut(s) 136, 189, 338, 346, 386, 419, 467, 475, 627
BstMBI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BstNI CCWGG 2 cut(s) 94, 631
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 92, 629
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 665
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 2 cut(s) 306, 360
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 357, 404, 438
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 327, 570
CviAII CATG 3 cut(s) 70, 215, 307
CviJI RGCY 7 cut(s) 53, 87, 199, 260, 293, 406, 410
CviKI_1 RGCY 7 cut(s) 53, 87, 199, 260, 293, 406, 410
CviQI GTAC 3 cut(s) 90, 327, 570
DpnI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
DpnII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
DraI TTTAAA 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 357, 438
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 682
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 92, 629
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 5 cut(s) 71, 210, 216, 308, 538
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 2 cut(s) 315, 444
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeIII GGCC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 3 cut(s) 73, 218, 310
HinfI GANTC 2 cut(s) 100, 123
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 3 cut(s) 360, 441, 663
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 518
Hpy8I GTNNAC 3 cut(s) 360, 441, 663
HpyAV CCTTC 1 cut(s) 503
HpyCH4IV ACGT 3 cut(s) 144, 252, 674
HpyCH4V TGCA 2 cut(s) 609, 663
HpySE526I ACGT 3 cut(s) 144, 252, 674
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 3 cut(s) 73, 218, 310
Kzo9I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 444
MaeII ACGT 3 cut(s) 144, 252, 674
MaeIII GTNAC 1 cut(s) 682
MalI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
MboI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
MboII GAAGA 2 cut(s) 534, 637
MflI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
MhlI GDGCHC 5 cut(s) 164, 177, 262, 306, 665
MluCI AATT 4 cut(s) 349, 397, 430, 526
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 2 cut(s) 156, 524
MspA1I CMGCKG 3 cut(s) 53, 199, 410
MspR9I CCNGG 2 cut(s) 94, 631
MvaI CCWGG 2 cut(s) 94, 631
NcoI CCATGG 1 cut(s) 306
NdeII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 100, 123
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 92, 629
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 92, 629
PspN4I GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
PvuII CAGCTG 3 cut(s) 53, 199, 410
RsaI GTAC 3 cut(s) 91, 328, 571
RsaNI GTAC 3 cut(s) 90, 327, 570
SaqAI TTAA 2 cut(s) 156, 524
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 2 cut(s) 94, 631
SduI GDGCHC 5 cut(s) 164, 177, 262, 306, 665
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 128, 261
SmoI CTYRAG 2 cut(s) 128, 261
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 526
SspMI CTAG 2 cut(s) 315, 444
StyD4I CCNGG 2 cut(s) 92, 629
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 525
TaiI ACGT 3 cut(s) 147, 255, 677
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 4 cut(s) 349, 397, 430, 526
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 2 cut(s) 156, 524
Tru9I TTAA 2 cut(s) 156, 524
TscAI CASTG 2 cut(s) 306, 367
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 2 cut(s) 306, 367
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 357, 438
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 315, 444
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.