Rh4CG290000
ERF Family

ARM repeat superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011419
Physical Location & Seq
Reverse (-)
54881199 .. 54888300
7102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG290000.1

Sequence Viewer

Length: 2811 bp
ATGGAGGTCGCAGCTCAAATCGGTCAGCTGCTAAACGCCACCGTCAGCCCCGATTCCGGCGCCGTCCATACGGCAACCGAAGCCCTCGATCGCCTCTCTCAGCTCCCCGATTTCCCTTACTATCTCCTCTCCATCTCCGCCGGAGGTGAAAATCAAGGTCAGAAAATCGCTGCGGCTACATACTTAAAAAACTTCACTAGGAAAAATGTTGAAGGGGATGTTTCGGATTCGAAGCCGAAAGTCAGTAAGGAGTTCAAGGACCAGCTCTTGCGAGCTTTGCTGCAATCCGAACCTGCGGTCGTTAAAGTTTTGGTTGAAGTGTTCCGGGTTATTGTTGTTGCTGAGTTTGTTAAGCAGAATTGGTGGCCTGAACTTGTTCCTGATCTGCGAGCCGCCCTTGAAAATAGTAACCTTATTAGTGGTGCAAACTCTCAATGGAACACCATTAATGCCCTACGAGTTCTTCATGCACTTGTTAGACCTTTTCAGTATTTTTTGGAGGCTACAGTTTCAAAGGAGCCAGTACCGCCACAGCTAGAGCTAATTGCAAAGGATATTCTTGTGCCTTTGTTAACATTATTCCATCAAATTGTTCAAAAGGCATTGGGTACTCATGGTATGACAGACGTGGAAACAGAAAATTTACTTCTGATTGTCTGCAAATGCATGTATTTCACTGTGAGGTCGCATATGCCATCTGCTTTAGTGCCTCTTCTACCTTCGTTTTGTCATGATCTAATTGGCATTCTTGATTCTTTGAGTTTTGACTGCGTGATAACTCCAGACAATGGGTACCAGATGAGGTTAAAGACCGGAAAAAGAAGTCTGCGCATTTTCTGTTGTCTCATTACTCGACACCGGAAGTATTCTGATAAGTTGATGCCAGACATTGTAAAATGTGCTCTGAACGTAGTCAAATACAGCAAGAATATCAGCAAGCTTGACTTTTTATCGGAGAGGATTATTTCATTGTCTTTTGACGTGATATCACATGTTCTTGAAACAGGGCCCGGATGGAGATTAGTTTCTCCACATTTTTCATATCTGTTGGATTCTGCAATCTTTCCAGCATTGGTAATGAATGAAAAGGATATCTCAGAGTGGGAAGAAGATGCAGAGGAGTACATACGAAAGAATCTTCCATCTGACCTTGAAGAAATTTCTGGCTGGAGGGAGGATCTATTTACAGCCAGAAAAAGTGCTATAAATTTACTTGGTGTTATTTCAGTGTCAAAGGGACCTCAAATGGGAACTTCTACTAGTGCCTCATCAGCTTCATCCAAACGCAAAAAGGGTGAAAAGAAGAAGCGAAACAATCAAACTTGTTCAATTGGAGAACTATTGGTGCTTCCATTTCTGTCAAAGTTTCCAATTCCTTCTGATGCTAATCCATCCCAAACAAGAATTATGAATGACTATTTTGGTGTTTTGATGGCATATGCTGGCTTGCTAGATTTTCTAAGAGAGCAGGAACCTACACATTCAGCAACTCTGGTTCGATCTCGGCTGCTACCAATGTATAATTTATCAGTGGGCCCACCGTTGGTTGCTGCTGCAAACTGGGTGCTGGGAGAACTGGCATCCTGTCTACCTGAAGACATGAGTGCAGATGTGTATTCCTCATTGCTAAAGGCATTGGCTATGCCCGACAGCAGCAATACTTCTTGTTATCCAGTGCGGGTATCTGCTGCTGCAGCCATTGTAGCGCTTCTTGATAATGACTACCCACCACCTGAGTGGCTTCCTCTCCTTCAAGTTGTGATTGGTAGAATTGGCCGTAACGAGGAAGAAAACTCTATTTTATTTCAGCTTCTTAGTTCTGTGGTGGAGGCGGGAAATGAAAATGTTGCAGTCCATATCCCATATATCATTTCATCATTGGTTGTGGAAATCTCAAAATGGATGCCCCCTGGTCTGGAGCCATGGCCTCAAATGGTTGAGAATGGCTTTGCAGCATTAGCAGTGATGGCTCAAATTTGGGAAAATGATATGTCTGAAGAACTGGAAGAGAAGGAATCCGGCCAAAACTTTCTATCAGGTCAAGCTATTACCGGCAGAGCTTTCTCTGATCTCTTGCAACAGGCTTGGCTCGCACCAATGCATATATCGGATCAGGAAGATAATGCTCTACCCCCTCCATCTTGCTTAGATTCTGCATCAACGCTACTTCGATCCATCATGCTATCTGTTACTGGAAGTAATGTAATTCTAGAGCTTAAAGTACCAGAGCTATTATTAGTTTGGGCTGATCTGATTGCGGACTGGCATGCTTGGGAAGAATCGGAGGACATGTCAGTCTTTGAGTGCATTAAAGAAGTTGTCAGTCTACACAGTAAGTATGGGCTGAAGAATTTTATTGTAGGACAGATGCCATTTCCTCCAGCTCCACCTGTTCCCAAGCATTCTGTAATAGAAGGTATTGGTACTTTTATAAGTGAGGCCACTTTACAATATCCATCTGCAACATGGAGGGCTTGCTCTTGTATCCATTTGCTGCTACATGTCCCAAGTTACTCATCTGAGACAGAAAACGTGAAGCAGTCATTAGCAGCAGCATTTTGTCAGGCAACATTTTCTCGTTTCAGAGAAGTTAAAAGCAAGCCTGGATCTCTCTGGAAGCCTTTGTTGCTTGCTATATCATCGTGCTATTTATGTTCTCCTGAAGTTGTAGAGAGTACATTGGAGAAGGATGGAGATGGAGGCTTCGAAACCTGGTTAGCTGCCCTCAGATTGGTTTCCACCAACTCTTTCAAACCTGGGCTATCAAGAGAGTCAGAGATGAAGTTGATTGGTGAGTATTTTGGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 map04013
Pfam Domains
Protein Families
IBN_N

Protein Analysis

936

Amino Acids

103.58

Weight (kDa)

5.25

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 25 - 94 9.3e-07 Importin-beta N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17340 AT3G17340
fragaria_vesca FvH4_4g21110 FvH4_4g21110 FvH4_4g21110
malus_domestica MD15G1386700.v1.1 MD16G1139700.v1.1
prunus_persica Prupe.1G109100_v2.0.a1
pyrus_communis pycom16g12390
rosa_chinensis RchiOBHm_Chr4g0426661
rosa_laevigata RLG00000007286
rosa_multiflora Rmu_sc0001821.1_g000015
rosa_roxburghii Rroxscaffold_5G00368660
rosa_rugosa Rorug04G0214000 Rorug04G0214100
rosa_samantha Rh4AG269200 Rh4BG275500 Rh4CG290000 Rh4DG272500
rosa_wichuraiana Rw4G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2432
AasI GACNNNNNNGTC 1 cut(s) 2294
Acc16I TGCGCA 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 792
AccB1I GGYRCC 2 cut(s) 59, 792
AccB7I CCANNNNNTGG 1 cut(s) 788
AccI GTMKAC 2 cut(s) 1588, 2326
AciI CCGC 8 cut(s) 138, 173, 296, 393, 527, 1678, 1832, 2258
AclWI GGATC 4 cut(s) 1185, 2118, 2166, 2614
AcoI YGGCCR 2 cut(s) 1774, 2020
AcsI RAATTY 5 cut(s) 640, 1158, 1207, 1974, 2350
AcuI CTGAAG 4 cut(s) 1614, 2016, 2366, 2682
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 7 cut(s) 525, 610, 794, 1124, 2223, 2425, 2677
AfeI AGCGCT 1 cut(s) 1707
AfiI CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
AflIII ACRYGT 3 cut(s) 991, 2289, 2500
AhlI ACTAGT 1 cut(s) 1259
AjiI CACGTC 2 cut(s) 628, 982
AjnI CCWGG 4 cut(s) 1909, 2602, 2711, 2755
AleI CACNNNNGTG 1 cut(s) 1735
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 2 cut(s) 848, 2516
AlwI GGATC 4 cut(s) 1185, 2118, 2166, 2614
Aor51HI AGCGCT 1 cut(s) 1707
AoxI GGCC 7 cut(s) 365, 1007, 1534, 1774, 1925, 2020, 2439
ApaI GGGCCC 2 cut(s) 1011, 1538
ApoI RAATTY 5 cut(s) 640, 1158, 1207, 1974, 2350
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 375
Asp718I GGTACC 1 cut(s) 792
AspLEI GCGC 3 cut(s) 62, 831, 1708
AspS9I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
AsuC2I CCSGG 2 cut(s) 326, 1011
AsuHPI GGTGA 3 cut(s) 158, 1307, 2804
AsuII TTCGAA 2 cut(s) 230, 2706
AvaII GGWCC 2 cut(s) 259, 1238
BaeGI GKGCMC 2 cut(s) 1011, 1538
BanI GGYRCC 2 cut(s) 59, 792
BanII GRGCYC 2 cut(s) 1011, 1538
BbsI GAAGAC 1 cut(s) 1602
Bbv12I GWGCWC 1 cut(s) 904
BceAI ACGGC 3 cut(s) 47, 87, 1761
BciT130I CCWGG 4 cut(s) 1911, 2604, 2713, 2757
BciVI GTATCC 1 cut(s) 2495
BcnI CCSGG 2 cut(s) 326, 1011
BcoDI GTCTC 2 cut(s) 848, 2516
BcuI ACTAGT 1 cut(s) 1259
BfaI CTAG 5 cut(s) 198, 536, 1260, 1451, 2210
BfmI CTRYAG 2 cut(s) 504, 1692
BfoI RGCGCY 2 cut(s) 63, 1709
BfuAI ACCTGC 1 cut(s) 301
BfuI GTATCC 1 cut(s) 2495
Bme1390I CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
Bme18I GGWCC 2 cut(s) 259, 1238
BmgBI CACGTC 2 cut(s) 628, 982
BmgT120I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
BmiI GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
BmrFI CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
BmrI ACTGGG 1 cut(s) 1570
BmsI GCATC 7 cut(s) 870, 1102, 1372, 1589, 1893, 2165, 2358
BmuI ACTGGG 1 cut(s) 1570
BpiI GAAGAC 1 cut(s) 1602
BpmI CTGGAG 4 cut(s) 765, 1189, 1937, 2364
Bpu14I TTCGAA 2 cut(s) 230, 2706
BpuMI CCSGG 2 cut(s) 326, 1011
BsaBI GATNNNNATC 1 cut(s) 1386
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 3 cut(s) 1909, 1922, 2756
BsaWI WCCGGW 2 cut(s) 812, 858
BsaXI ACNNNNNCTCC 2 cut(s) 2276, 2306
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
Bse118I RCCGGY 1 cut(s) 2051
Bse1I ACTGG 7 cut(s) 521, 1565, 1581, 1673, 2007, 2197, 2267
Bse3DI GCAATG 1 cut(s) 1622
Bse8I GATNNNNATC 1 cut(s) 1386
BseBI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
BseDI CCNNGG 3 cut(s) 1909, 1922, 2756
BseGI GGATG 7 cut(s) 223, 1019, 1277, 1391, 1580, 1908, 2695
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
BseMI GCAATG 1 cut(s) 1622
BseMII CTCAG 6 cut(s) 113, 333, 1110, 1725, 2511, 2740
BseNI ACTGG 7 cut(s) 521, 1565, 1581, 1673, 2007, 2197, 2267
BseRI GAGGAG 2 cut(s) 116, 1133
BseSI GKGCMC 2 cut(s) 1011, 1538
BseYI CCCAGC 1 cut(s) 1567
BsgI GTGCAG 1 cut(s) 1626
Bsh1285I CGRYCG 2 cut(s) 91, 300
BshFI GGCC 7 cut(s) 367, 1009, 1536, 1776, 1927, 2022, 2441
BshNI GGYRCC 2 cut(s) 59, 792
BsiEI CGRYCG 2 cut(s) 91, 300
BsiHKAI GWGCWC 1 cut(s) 904
BsiSI CCGG 8 cut(s) 57, 141, 325, 813, 859, 1011, 2019, 2052
BslFI GGGAC 2 cut(s) 1251, 2489
BslI CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
BsmAI GTCTC 2 cut(s) 848, 2516
BsmFI GGGAC 2 cut(s) 1251, 2489
BsmI GAATGC 2 cut(s) 744, 2401
BsnI GGCC 7 cut(s) 367, 1009, 1536, 1776, 1927, 2022, 2441
Bsp119I TTCGAA 2 cut(s) 230, 2706
Bsp120I GGGCCC 2 cut(s) 1007, 1534
Bsp1286I GDGCHC 3 cut(s) 904, 1011, 1538
Bsp19I CCATGG 1 cut(s) 1922
BspACI CCGC 8 cut(s) 138, 173, 296, 393, 527, 1678, 1832, 2258
BspANI GGCC 7 cut(s) 367, 1009, 1536, 1776, 1927, 2022, 2441
BspCNI CTCAG 6 cut(s) 112, 334, 1109, 1726, 2512, 2739
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
BspMAI CTGCAG 1 cut(s) 1696
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 4 cut(s) 1185, 2118, 2166, 2614
BspT104I TTCGAA 2 cut(s) 230, 2706
BspT107I GGYRCC 2 cut(s) 59, 792
BsrDI GCAATG 1 cut(s) 1622
BsrFI RCCGGY 1 cut(s) 2051
BsrI ACTGG 7 cut(s) 521, 1565, 1581, 1673, 2007, 2197, 2267
BssAI RCCGGY 1 cut(s) 2051
BssECI CCNNGG 3 cut(s) 1909, 1922, 2756
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 1922
Bst2UI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
Bst4CI ACNGT 5 cut(s) 43, 508, 679, 1542, 2333
Bst6I CTCTTC 2 cut(s) 717, 2001
BstACI GRCGYC 1 cut(s) 60
BstBI TTCGAA 2 cut(s) 230, 2706
BstDEI CTNAG 9 cut(s) 99, 342, 1096, 1460, 1734, 1814, 2146, 2520, 2726
BstDSI CCRYGG 1 cut(s) 1922
BstF5I GGATG 7 cut(s) 223, 1019, 1277, 1391, 1580, 1908, 2695
BstH2I RGCGCY 2 cut(s) 63, 1709
BstHHI GCGC 3 cut(s) 62, 831, 1708
BstMAI GTCTC 2 cut(s) 848, 2516
BstMCI CGRYCG 2 cut(s) 91, 300
BstNI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
BstNSI RCATGY 5 cut(s) 670, 995, 2270, 2293, 2504
BstSCI CCNGG 6 cut(s) 324, 1009, 1909, 2602, 2711, 2755
BstSFI CTRYAG 2 cut(s) 504, 1692
BstSLI GKGCMC 2 cut(s) 1011, 1538
BstV2I GAAGAC 1 cut(s) 1602
BstX2I RGATCY 2 cut(s) 1177, 2606
BstXI CCANNNNNNTGG 1 cut(s) 1737
BstYI RGATCY 2 cut(s) 1177, 2606
BsuI GTATCC 1 cut(s) 2495
BsuRI GGCC 7 cut(s) 367, 1009, 1536, 1776, 1927, 2022, 2441
BtgI CCRYGG 1 cut(s) 1922
BtrI CACGTC 2 cut(s) 628, 982
BtsCI GGATG 7 cut(s) 223, 1019, 1277, 1391, 1580, 1908, 2695
BtsI GCAGTG 1 cut(s) 1968
BtsIMutI CAGTG 5 cut(s) 675, 1233, 1536, 1680, 1968
BveI ACCTGC 1 cut(s) 301
CciI TCATGA 1 cut(s) 730
CfoI GCGC 3 cut(s) 62, 831, 1708
Cfr10I RCCGGY 1 cut(s) 2051
Cfr13I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
CsiI ACCWGGT 1 cut(s) 2711
Csp6I GTAC 7 cut(s) 524, 609, 793, 1123, 2222, 2424, 2676
CviQI GTAC 7 cut(s) 524, 609, 793, 1123, 2222, 2424, 2676
DdeI CTNAG 9 cut(s) 99, 342, 1096, 1460, 1734, 1814, 2146, 2520, 2726
DinI GGCGCC 1 cut(s) 61
DrdI GACNNNNNNGTC 1 cut(s) 2294
DseDI GACNNNNNNGTC 1 cut(s) 2294
EaeI YGGCCR 2 cut(s) 1774, 2020
Eam1104I CTCTTC 2 cut(s) 717, 2001
EarI CTCTTC 2 cut(s) 717, 2001
EciI GGCGGA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 1922
Eco24I GRGCYC 2 cut(s) 1011, 1538
Eco32I GATATC 2 cut(s) 987, 1093
Eco47I GGWCC 2 cut(s) 259, 1238
Eco47III AGCGCT 1 cut(s) 1707
Eco57I CTGAAG 4 cut(s) 1614, 2016, 2366, 2682
EcoO109I RGGNCCY 2 cut(s) 1007, 1238
EcoRII CCWGG 4 cut(s) 1909, 2602, 2711, 2755
EcoRV GATATC 2 cut(s) 987, 1093
EcoT14I CCWWGG 1 cut(s) 1922
EcoT22I ATGCAT 2 cut(s) 668, 2103
EcoT38I GRGCYC 2 cut(s) 1011, 1538
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 1922
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 2 cut(s) 1251, 2489
FauI CCCGC 2 cut(s) 1671, 1825
FauNDI CATATG 2 cut(s) 690, 1438
FblI GTMKAC 2 cut(s) 1588, 2326
FokI GGATG 7 cut(s) 230, 1026, 1264, 1378, 1567, 1915, 2702
FriOI GRGCYC 2 cut(s) 1011, 1538
FspBI CTAG 5 cut(s) 198, 536, 1260, 1451, 2210
FspI TGCGCA 1 cut(s) 830
GlaI GCGC 3 cut(s) 61, 830, 1707
GsaI CCCAGC 1 cut(s) 1571
GsuI CTGGAG 4 cut(s) 765, 1189, 1937, 2364
HaeII RGCGCY 2 cut(s) 63, 1709
HaeIII GGCC 7 cut(s) 367, 1009, 1536, 1776, 1927, 2022, 2441
HapII CCGG 8 cut(s) 57, 141, 325, 813, 859, 1011, 2019, 2052
HhaI GCGC 3 cut(s) 62, 831, 1708
Hin1I GRCGYC 1 cut(s) 60
Hin6I GCGC 3 cut(s) 60, 829, 1706
HinP1I GCGC 3 cut(s) 60, 829, 1706
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 9 cut(s) 53, 227, 752, 1052, 1135, 2015, 2150, 2279, 2771
HpaI GTTAAC 1 cut(s) 573
HpaII CCGG 8 cut(s) 57, 141, 325, 813, 859, 1011, 2019, 2052
HphI GGTGA 3 cut(s) 158, 1307, 2804
Hpy166II GTNNAC 3 cut(s) 573, 1589, 2327
Hpy8I GTNNAC 3 cut(s) 573, 1589, 2327
HpyAV CCTTC 7 cut(s) 206, 729, 1386, 1760, 2005, 2408, 2680
HpyCH4III ACNGT 5 cut(s) 43, 508, 679, 1542, 2333
HpyCH4IV ACGT 4 cut(s) 627, 909, 981, 2532
HpyF3I CTNAG 9 cut(s) 99, 342, 1096, 1460, 1734, 1814, 2146, 2520, 2726
HpySE526I ACGT 4 cut(s) 627, 909, 981, 2532
Hsp92I GRCGYC 1 cut(s) 60
HspAI GCGC 3 cut(s) 60, 829, 1706
KasI GGCGCC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 796
KspAI GTTAAC 1 cut(s) 573
LmnI GCTCC 4 cut(s) 108, 517, 1918, 2389
LweI GCATC 7 cut(s) 870, 1102, 1372, 1589, 1893, 2165, 2358
MabI ACCWGGT 1 cut(s) 2711
MaeI CTAG 5 cut(s) 198, 536, 1260, 1451, 2210
MaeII ACGT 4 cut(s) 627, 909, 981, 2532
MaeIII GTNAC 4 cut(s) 407, 1778, 2188, 2510
MfeI CAATTG 1 cut(s) 1329
MflI RGATCY 2 cut(s) 1177, 2606
MhlI GDGCHC 3 cut(s) 904, 1011, 1538
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 2780
MmeI TCCRAC 1 cut(s) 1029
Mph1103I ATGCAT 2 cut(s) 668, 2103
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
MslI CAYNNNNRTG 1 cut(s) 1735
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 8 cut(s) 57, 141, 325, 813, 859, 1011, 2019, 2052
MspR9I CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
MunI CAATTG 1 cut(s) 1329
Mva1269I GAATGC 2 cut(s) 744, 2401
MvaI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 2 cut(s) 326, 1011
NcoI CCATGG 1 cut(s) 1922
NdeI CATATG 2 cut(s) 690, 1438
NlaIV GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
NmeAIII GCCGAG 1 cut(s) 1483
NsbI TGCGCA 1 cut(s) 830
NsiI ATGCAT 2 cut(s) 668, 2103
NspI RCATGY 5 cut(s) 670, 995, 2270, 2293, 2504
NspV TTCGAA 2 cut(s) 230, 2706
OliI CACNNNNGTG 1 cut(s) 1735
PaeI GCATGC 1 cut(s) 2270
PagI TCATGA 1 cut(s) 730
PciI ACATGT 3 cut(s) 991, 2289, 2500
PctI GAATGC 2 cut(s) 744, 2401
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 8 cut(s) 53, 227, 752, 1052, 1135, 2015, 2150, 2279
PflMI CCANNNNNTGG 1 cut(s) 788
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 1 cut(s) 2779
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 2779
PpuMI RGGWCCY 1 cut(s) 1238
PscI ACATGT 3 cut(s) 991, 2289, 2500
PshBI ATTAAT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 2432
Psp5II RGGWCCY 1 cut(s) 1238
Psp6I CCWGG 4 cut(s) 1909, 2602, 2711, 2755
PspFI CCCAGC 1 cut(s) 1567
PspGI CCWGG 4 cut(s) 1909, 2602, 2711, 2755
PspN4I GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
PspOMI GGGCCC 2 cut(s) 1007, 1534
PspPI GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
PspPPI RGGWCCY 1 cut(s) 1238
PstI CTGCAG 1 cut(s) 1696
PsuI RGATCY 2 cut(s) 1177, 2606
PvuI CGATCG 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 7 cut(s) 525, 610, 794, 1124, 2223, 2425, 2677
RsaNI GTAC 7 cut(s) 524, 609, 793, 1123, 2222, 2424, 2676
RseI CAYNNNNRTG 1 cut(s) 1735
SaqAI TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
Sau96I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
SchI GAGTC 1 cut(s) 2780
ScrFI CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
SduI GDGCHC 3 cut(s) 904, 1011, 1538
SexAI ACCWGGT 1 cut(s) 2711
SfaNI GCATC 7 cut(s) 870, 1102, 1372, 1589, 1893, 2165, 2358
SfcI CTRYAG 2 cut(s) 504, 1692
SfoI GGCGCC 1 cut(s) 61
SfuI TTCGAA 2 cut(s) 230, 2706
SinI GGWCC 2 cut(s) 259, 1238
SmiMI CAYNNNNRTG 1 cut(s) 1735
SpeI ACTAGT 1 cut(s) 1259
SphI GCATGC 1 cut(s) 2270
SsiI CCGC 8 cut(s) 138, 173, 296, 393, 527, 1678, 1832, 2258
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 5 cut(s) 198, 536, 1260, 1451, 2210
StyD4I CCNGG 6 cut(s) 324, 1009, 1909, 2602, 2711, 2755
StyI CCWWGG 1 cut(s) 1922
TaaI ACNGT 5 cut(s) 43, 508, 679, 1542, 2333
TaiI ACGT 4 cut(s) 630, 912, 984, 2535
TaqI TCGA 6 cut(s) 87, 230, 853, 1498, 2170, 2706
TaqII GACCGA 1 cut(s) 11
TatI WGTACW 2 cut(s) 1122, 2675
TauI GCSGC 2 cut(s) 176, 395
TfiI GAWTC 8 cut(s) 53, 227, 752, 1052, 1135, 2015, 2150, 2279
Tru1I TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
Tru9I TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
TscAI CASTG 5 cut(s) 682, 1233, 1536, 1680, 1968
TspRI CASTG 5 cut(s) 682, 1233, 1536, 1680, 1968
Van91I CCANNNNNTGG 1 cut(s) 788
VpaK11BI GGWCC 2 cut(s) 259, 1238
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 5 cut(s) 640, 1158, 1207, 1974, 2350
XbaI TCTAGA 1 cut(s) 2209
XceI RCATGY 5 cut(s) 670, 995, 2270, 2293, 2504
XcmI CCANNNNNNNNNTGG 2 cut(s) 1734, 2463
XmiI GTMKAC 2 cut(s) 1588, 2326
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 5 cut(s) 198, 536, 1260, 1451, 2210
Zsp2I ATGCAT 2 cut(s) 668, 2103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.