Rh4DG272500
ERF Family

ARM repeat superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011419
Physical Location & Seq
Reverse (-)
49246666 .. 49253543
6878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG272500.1

Sequence Viewer

Length: 2958 bp
ATGGAGGTCGCAGCTCAAATCGGTCAGCTGCTAAACGCCACCGTCAGCCCCGATTCCGGCGCCGTCCATACGGCAACCGAAGCCCTCGATCGCCTCTCTCAGCTCCCCGATTTCCCTTACTATCTCCTCTCCATCTCCGCCGGAGGTGAAAATCAAGGTCAGAAAATCGCTGCAGCTACGTACTTAAAAAACTTCACTAGGAAAAATGTTGAAGGGGATGTTTCGGATTCGAAACCGAAAGTCAGTAAGGAGTTCAAGGACCAGCTCCTGCGAGCTTTGCTGCAATCCGAACCTGCGGTCGTTAAAGTTTTGGTTGAAGTGTTCCGGGTTATTGTTGTTGCTGAGTTTGTTAAGCAGAATTGGTGGCCTGAACTTGTTCCTGATCTGCGAGCTGCCCTTGAAAATAGTAACCTTATTAGTGGTGCAAACTCTCAATGGAACACCGTTAATGCCCTACGAGTTCTTCATGCACTTGTTAGACCTTTTCAGTATTTTTTGGAGGCTACAGTTTCAAAGGAGCCAGTACCACCACAGCTAGAGCTAATTGCAAAGGATATTCTTGTGCCTTTGTTAACATTATTCCATCAAATTGTTCAAAAGGCATTGGGTACTCATGGTATGACAGACGTGGAAACAGAAAATTTACTTCTGATTGTCTGCAAATGCATGTATTTCACTGTGAGGTCGCATATGCCATCTGCTTTAGTGCCTCTTCTACCTTCGTTTTGTCATGATCTAATTGGCATTCTTGATTCTTTGAGTTTTGACTGCGTGATAACTCCAGACAATGGGTACCAGATGAGGTTAAAGACTGGAAAAAGAAGTCTGCGCATTTTCTGTTGTCTCATTACTCGACACCGGAAATATTCTGAAAAGTTGATGCCAAACATTGTAAAATGTGCTCTGAACGTAGTCAAATACAGCAAGAATATCAGCAAGCTTGACTTTTTATCGGAGAGGATTATTTCATTGTCTTTTGACGTGATATCACACGTTCTTGAAACAGGGCCCGGATGGAGATTAGTTTCTCCACATTTTTCATATCTGTTGGATTCTGCAATCTTTCCAGCATTGGTAATGAATGAAAAGGATATCTCAGAGTGGGAAGAAGATGCAGAGGAGTACATACGAAAGAATCTTCCATCTGACCTTGAAGAAATTTCTGGCTGGAGGGAGGATCTATTTACAGCCAGAAAAAGTGCTATAAATTTACTCGGTGTTATTTCAGTGTCAAAGGGACCTCAAATGGGAACTTCTACTAATGCCTCATCAGCTTCATCCAAACGCAAAAAGGGTGAAAAGAAGAAGCGAAACAATCAAACTTGTTCAATTGGAGAACTATTGGTGCTTCCATTTCTGTCAAAGTTTCCAATTCCTTCTGATGCTAATCCATCCCAAACTAGAATTATGAATGACTATTTTGGTGTTTTGATGGCATATGCTGGCTTGCTAGATTTTCTAAGAGAGCAGGAACCTACACATTCAGCAACTCTGGTTCGATCTCAGCTGCTACCATTGTATAATTTATCAGTGGGCCCACCGTTGGTTGCTGCTGCAAACTGGGTGCTGGGAGAACTGGCATCCTGTCTACCTGAAGACATGAGTGCAGATGTGTATTCCTCATTGCTAAAGGCATTGGCTATACCCGATAGCAGCGATACTTCTTGTTATCCAGTGCGGGTATCTGCTGCTGCAGCCATTGTAGCGCTTCTTGATAATGACTACCCACCACCTGAGTGGCTTCCTCTCCTTCAAGTTGTGATTGGTAGAATTGGCCGTAACGAGGAAGAAAACTCTATTTTATTTCAGCTTCTTAGTTCTGTGGTGGAGGCGGGAAATGAAAATGTTGCTGTCCATATCCCATATATCATTTCATCATTGGTTGTGGAAATCTCAAAATGCATGCCCCCTGGTCTGGAGCCATGGCCTCAAATGGTTGAGAATGGCTTTGCAGCATTAGCAGTGATGGCTCAAATTTGGGAAAATGATATGTCTGAAGAACTGGAAGAGAAGGAATCCAGCCAAAACTTTCTATCAGGTCAAGCTACTATTGGCAGAGCTTTCTCTGATCTCTTGCAACAGGCTTGGCTCGCACCAATGCATATATCGGATCAGGAAGATAATGCTTTACCCCCTCCATCTTGCTTAGATTCTGCATCAACGCTACTTCGATCCATCATGCTATCTGTTACTGGAAGTAATGTAATTCTAGAGCTTAAAGTACCAGAGCTATTATTAGTTTGGGCTGATCTGATTGCGGACTGGCATGCTTGGGAAGAATCAGAGGACATGTCAGTCTTTGAGTGCATTAAAGAAGTTGTCAGTCTACACAGTAAGTATGGGCTGAAGAATTTTATTGTAGGACAGATGCCATCTCCTCCAGCTCCACCTGTTCCCAAGCATTCTGTAATAGAAGGTATTGGTACTTTTATAAGTGAGGCCACTTTACAATATCCATCTGCAACATGGAGGGCTTGCTCTTGTATCCATTTGCTGCTACATGTCCCAAGTTACTCATCTGAGACAGAAAGTGTGAAGCAGTCATTAGCAGCAGCATTTTGTCAGGCAACATTTTCTCGTTTCAGAGAAGTTAAAAGCAAGCCTGGATCTCTGTGGAAGCCTTTGTTGCTTGCTATATCATCGTGCTATTTATGTTCTCCTGAAGTTGTAGAGAGTACATTGGAGAAGGATGGAGATGGAGGCTTCGAAACCTGGTTAGCTGCCCTCGGATTGGCTTCCACCAACTCCTTCAAACCTGGGCTATCAAGAGAGTCAGAGATAAAATTGATTGGCTGCCTAGAGGAAATTGATCTGCAAGAAGTTGTGACGTTACTTGTGAAGAAGTATCATCCCGTTGTCATAGAAAGACAGGAGGCATATCCACCAGAGCTCATTTCAAGATTTGTCGAGTGTTTCCCGCAGTGTAAGATTTTCTTCCAGCATTATTTGAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 map04013
Pfam Domains
Protein Families
IBN_N

Protein Analysis

985

Amino Acids

109.17

Weight (kDa)

5.23

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 25 - 94 9.9e-07 Importin-beta N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17340 AT3G17340
fragaria_vesca FvH4_4g21110 FvH4_4g21110 FvH4_4g21110
malus_domestica MD15G1386700.v1.1 MD16G1139700.v1.1
prunus_persica Prupe.1G109100_v2.0.a1
pyrus_communis pycom16g12390
rosa_chinensis RchiOBHm_Chr4g0426661
rosa_laevigata RLG00000007286
rosa_multiflora Rmu_sc0001821.1_g000015
rosa_roxburghii Rroxscaffold_5G00368660
rosa_rugosa Rorug04G0214000 Rorug04G0214100
rosa_samantha Rh4AG269200 Rh4BG275500 Rh4CG290000 Rh4DG272500
rosa_wichuraiana Rw4G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2432
AasI GACNNNNNNGTC 1 cut(s) 2294
Acc16I TGCGCA 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 792
AccB1I GGYRCC 2 cut(s) 59, 792
AccB7I CCANNNNNTGG 1 cut(s) 788
AccI GTMKAC 2 cut(s) 1588, 2326
AciI CCGC 6 cut(s) 138, 296, 1678, 1832, 2258, 2918
AclWI GGATC 4 cut(s) 1185, 2118, 2166, 2614
AcoI YGGCCR 1 cut(s) 1774
AcsI RAATTY 5 cut(s) 640, 1158, 1207, 1974, 2350
AcuI CTGAAG 4 cut(s) 1614, 2016, 2366, 2682
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 8 cut(s) 182, 525, 610, 794, 1124, 2223, 2425, 2677
AfeI AGCGCT 1 cut(s) 1707
AfiI CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
AflIII ACRYGT 3 cut(s) 991, 2289, 2500
AjiI CACGTC 2 cut(s) 628, 982
AjnI CCWGG 4 cut(s) 1909, 2602, 2711, 2755
AleI CACNNNNGTG 1 cut(s) 1735
Alw21I GWGCWC 2 cut(s) 904, 2892
Alw26I GTCTC 2 cut(s) 848, 2516
AlwI GGATC 4 cut(s) 1185, 2118, 2166, 2614
AlwNI CAGNNNCTG 1 cut(s) 268
Aor51HI AGCGCT 1 cut(s) 1707
AoxI GGCC 6 cut(s) 365, 1007, 1534, 1774, 1925, 2439
ApaI GGGCCC 2 cut(s) 1011, 1538
ApoI RAATTY 5 cut(s) 640, 1158, 1207, 1974, 2350
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
Asp700I GAANNNNTTC 1 cut(s) 375
Asp718I GGTACC 1 cut(s) 792
AspLEI GCGC 3 cut(s) 62, 831, 1708
AspS9I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
AsuC2I CCSGG 2 cut(s) 326, 1011
AsuHPI GGTGA 2 cut(s) 158, 1307
AsuII TTCGAA 2 cut(s) 230, 2706
AvaII GGWCC 2 cut(s) 259, 1238
BaeGI GKGCMC 2 cut(s) 1011, 1538
BanI GGYRCC 2 cut(s) 59, 792
BanII GRGCYC 3 cut(s) 1011, 1538, 2892
BbsI GAAGAC 1 cut(s) 1602
Bbv12I GWGCWC 2 cut(s) 904, 2892
BceAI ACGGC 3 cut(s) 47, 87, 1761
BciT130I CCWGG 4 cut(s) 1911, 2604, 2713, 2757
BciVI GTATCC 1 cut(s) 2495
BcnI CCSGG 2 cut(s) 326, 1011
BcoDI GTCTC 2 cut(s) 848, 2516
BfaI CTAG 6 cut(s) 198, 536, 1401, 1451, 2210, 2798
BfmI CTRYAG 3 cut(s) 171, 504, 1692
BfoI RGCGCY 2 cut(s) 63, 1709
BfuAI ACCTGC 1 cut(s) 301
BfuI GTATCC 1 cut(s) 2495
Bme1390I CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
Bme18I GGWCC 2 cut(s) 259, 1238
BmgBI CACGTC 2 cut(s) 628, 982
BmgT120I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
BmiI GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
BmrFI CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
BmrI ACTGGG 1 cut(s) 1570
BmsI GCATC 6 cut(s) 870, 1102, 1372, 1589, 2165, 2358
BmuI ACTGGG 1 cut(s) 1570
BpiI GAAGAC 1 cut(s) 1602
BpmI CTGGAG 4 cut(s) 765, 1189, 1937, 2364
Bpu14I TTCGAA 2 cut(s) 230, 2706
BpuMI CCSGG 2 cut(s) 326, 1011
BsaAI YACGTR 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 1386
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 1909, 1922, 2725, 2756
BsaWI WCCGGW 1 cut(s) 858
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
Bse1I ACTGG 8 cut(s) 521, 817, 1565, 1581, 1673, 2007, 2197, 2267
Bse3DI GCAATG 1 cut(s) 1622
Bse8I GATNNNNATC 1 cut(s) 1386
BseBI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
BseDI CCNNGG 4 cut(s) 1909, 1922, 2725, 2756
BseGI GGATG 7 cut(s) 223, 1019, 1277, 1391, 1580, 2695, 2848
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
BseMI GCAATG 1 cut(s) 1622
BseMII CTCAG 6 cut(s) 113, 333, 1110, 1517, 1725, 2511
BseNI ACTGG 8 cut(s) 521, 817, 1565, 1581, 1673, 2007, 2197, 2267
BseRI GAGGAG 3 cut(s) 116, 1133, 2367
BseSI GKGCMC 2 cut(s) 1011, 1538
BseYI CCCAGC 1 cut(s) 1567
BsgI GTGCAG 1 cut(s) 1626
Bsh1285I CGRYCG 2 cut(s) 91, 300
BshFI GGCC 6 cut(s) 367, 1009, 1536, 1776, 1927, 2441
BshNI GGYRCC 2 cut(s) 59, 792
BsiEI CGRYCG 2 cut(s) 91, 300
BsiHKAI GWGCWC 2 cut(s) 904, 2892
BsiSI CCGG 5 cut(s) 57, 141, 325, 859, 1011
BslFI GGGAC 2 cut(s) 1251, 2489
BslI CCNNNNNNNGG 7 cut(s) 56, 788, 1247, 1543, 1783, 1915, 2731
BsmAI GTCTC 2 cut(s) 848, 2516
BsmFI GGGAC 2 cut(s) 1251, 2489
BsmI GAATGC 2 cut(s) 744, 2401
BsnI GGCC 6 cut(s) 367, 1009, 1536, 1776, 1927, 2441
Bsp119I TTCGAA 2 cut(s) 230, 2706
Bsp120I GGGCCC 2 cut(s) 1007, 1534
Bsp1286I GDGCHC 4 cut(s) 904, 1011, 1538, 2892
Bsp19I CCATGG 1 cut(s) 1922
BspACI CCGC 6 cut(s) 138, 296, 1678, 1832, 2258, 2918
BspANI GGCC 6 cut(s) 367, 1009, 1536, 1776, 1927, 2441
BspCNI CTCAG 6 cut(s) 112, 334, 1109, 1516, 1726, 2512
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
BspMAI CTGCAG 2 cut(s) 175, 1696
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 4 cut(s) 1185, 2118, 2166, 2614
BspT104I TTCGAA 2 cut(s) 230, 2706
BspT107I GGYRCC 2 cut(s) 59, 792
BsrDI GCAATG 1 cut(s) 1622
BsrI ACTGG 8 cut(s) 521, 817, 1565, 1581, 1673, 2007, 2197, 2267
BssECI CCNNGG 4 cut(s) 1909, 1922, 2725, 2756
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 1922
Bst2UI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
Bst4CI ACNGT 6 cut(s) 43, 445, 508, 679, 1542, 2333
Bst6I CTCTTC 2 cut(s) 717, 2001
BstACI GRCGYC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 180
BstBI TTCGAA 2 cut(s) 230, 2706
BstDEI CTNAG 9 cut(s) 99, 342, 1096, 1460, 1503, 1734, 1814, 2146, 2520
BstDSI CCRYGG 1 cut(s) 1922
BstF5I GGATG 7 cut(s) 223, 1019, 1277, 1391, 1580, 2695, 2848
BstH2I RGCGCY 2 cut(s) 63, 1709
BstHHI GCGC 3 cut(s) 62, 831, 1708
BstMAI GTCTC 2 cut(s) 848, 2516
BstMCI CGRYCG 2 cut(s) 91, 300
BstMWI GCNNNNNNNGC 9 cut(s) 80, 277, 1271, 1694, 1703, 1958, 1967, 2090, 2626
BstNI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
BstNSI RCATGY 5 cut(s) 670, 1906, 2270, 2293, 2504
BstSCI CCNGG 6 cut(s) 324, 1009, 1909, 2602, 2711, 2755
BstSFI CTRYAG 3 cut(s) 171, 504, 1692
BstSLI GKGCMC 2 cut(s) 1011, 1538
BstSNI TACGTA 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 1602
BstX2I RGATCY 2 cut(s) 1177, 2606
BstXI CCANNNNNNTGG 1 cut(s) 1737
BstYI RGATCY 2 cut(s) 1177, 2606
BsuI GTATCC 1 cut(s) 2495
BsuRI GGCC 6 cut(s) 367, 1009, 1536, 1776, 1927, 2441
BtgI CCRYGG 1 cut(s) 1922
BtrI CACGTC 2 cut(s) 628, 982
BtsCI GGATG 7 cut(s) 223, 1019, 1277, 1391, 1580, 2695, 2848
BtsI GCAGTG 2 cut(s) 1968, 2927
BtsIMutI CAGTG 6 cut(s) 675, 1233, 1536, 1680, 1968, 2927
BveI ACCTGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 268
CciI TCATGA 1 cut(s) 730
CfoI GCGC 3 cut(s) 62, 831, 1708
Cfr13I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
CsiI ACCWGGT 1 cut(s) 2711
Csp6I GTAC 8 cut(s) 181, 524, 609, 793, 1123, 2222, 2424, 2676
CviQI GTAC 8 cut(s) 181, 524, 609, 793, 1123, 2222, 2424, 2676
DdeI CTNAG 9 cut(s) 99, 342, 1096, 1460, 1503, 1734, 1814, 2146, 2520
DinI GGCGCC 1 cut(s) 61
DrdI GACNNNNNNGTC 1 cut(s) 2294
DseDI GACNNNNNNGTC 1 cut(s) 2294
EaeI YGGCCR 1 cut(s) 1774
Eam1104I CTCTTC 2 cut(s) 717, 2001
EarI CTCTTC 2 cut(s) 717, 2001
EciI GGCGGA 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 2890
Eco105I TACGTA 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 1922
Eco24I GRGCYC 3 cut(s) 1011, 1538, 2892
Eco32I GATATC 2 cut(s) 987, 1093
Eco47I GGWCC 2 cut(s) 259, 1238
Eco47III AGCGCT 1 cut(s) 1707
Eco53kI GAGCTC 1 cut(s) 2890
Eco57I CTGAAG 4 cut(s) 1614, 2016, 2366, 2682
EcoICRI GAGCTC 1 cut(s) 2890
EcoO109I RGGNCCY 2 cut(s) 1007, 1238
EcoRII CCWGG 4 cut(s) 1909, 2602, 2711, 2755
EcoRV GATATC 2 cut(s) 987, 1093
EcoT14I CCWWGG 1 cut(s) 1922
EcoT22I ATGCAT 3 cut(s) 668, 1904, 2103
EcoT38I GRGCYC 3 cut(s) 1011, 1538, 2892
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 1922
FalI AAGNNNNNCTT 4 cut(s) 929, 961, 2918, 2950
FaqI GGGAC 2 cut(s) 1251, 2489
FauI CCCGC 3 cut(s) 1671, 1825, 2925
FauNDI CATATG 2 cut(s) 690, 1438
FblI GTMKAC 2 cut(s) 1588, 2326
FokI GGATG 7 cut(s) 230, 1026, 1264, 1378, 1567, 2702, 2835
FriOI GRGCYC 3 cut(s) 1011, 1538, 2892
FspBI CTAG 6 cut(s) 198, 536, 1401, 1451, 2210, 2798
FspI TGCGCA 1 cut(s) 830
GlaI GCGC 3 cut(s) 61, 830, 1707
GsaI CCCAGC 1 cut(s) 1571
GsuI CTGGAG 4 cut(s) 765, 1189, 1937, 2364
HaeII RGCGCY 2 cut(s) 63, 1709
HaeIII GGCC 6 cut(s) 367, 1009, 1536, 1776, 1927, 2441
HapII CCGG 5 cut(s) 57, 141, 325, 859, 1011
HhaI GCGC 3 cut(s) 62, 831, 1708
Hin1I GRCGYC 1 cut(s) 60
Hin6I GCGC 3 cut(s) 60, 829, 1706
HinP1I GCGC 3 cut(s) 60, 829, 1706
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 9 cut(s) 53, 227, 752, 1052, 1135, 2015, 2150, 2279, 2771
HpaI GTTAAC 1 cut(s) 573
HpaII CCGG 5 cut(s) 57, 141, 325, 859, 1011
HphI GGTGA 2 cut(s) 158, 1307
Hpy166II GTNNAC 3 cut(s) 573, 1589, 2327
Hpy8I GTNNAC 3 cut(s) 573, 1589, 2327
HpyAV CCTTC 8 cut(s) 206, 729, 1386, 1760, 2005, 2408, 2680, 2758
HpyCH4III ACNGT 6 cut(s) 43, 445, 508, 679, 1542, 2333
HpyCH4IV ACGT 6 cut(s) 179, 627, 909, 981, 993, 2828
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 277, 1271, 1694, 1703, 1958, 1967, 2090, 2626
HpyF3I CTNAG 9 cut(s) 99, 342, 1096, 1460, 1503, 1734, 1814, 2146, 2520
HpySE526I ACGT 6 cut(s) 179, 627, 909, 981, 993, 2828
Hsp92I GRCGYC 1 cut(s) 60
HspAI GCGC 3 cut(s) 60, 829, 1706
KasI GGCGCC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 796
KspAI GTTAAC 1 cut(s) 573
LmnI GCTCC 5 cut(s) 108, 270, 517, 1918, 2389
LweI GCATC 6 cut(s) 870, 1102, 1372, 1589, 2165, 2358
MabI ACCWGGT 1 cut(s) 2711
MaeI CTAG 6 cut(s) 198, 536, 1401, 1451, 2210, 2798
MaeII ACGT 6 cut(s) 179, 627, 909, 981, 993, 2828
MaeIII GTNAC 6 cut(s) 407, 1778, 2188, 2510, 2824, 2829
MfeI CAATTG 1 cut(s) 1329
MflI RGATCY 2 cut(s) 1177, 2606
MhlI GDGCHC 4 cut(s) 904, 1011, 1538, 2892
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 2780
MmeI TCCRAC 1 cut(s) 1029
Mph1103I ATGCAT 3 cut(s) 668, 1904, 2103
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
MslI CAYNNNNRTG 1 cut(s) 1735
MspA1I CMGCKG 2 cut(s) 28, 1507
MspI CCGG 5 cut(s) 57, 141, 325, 859, 1011
MspR9I CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
MunI CAATTG 1 cut(s) 1329
Mva1269I GAATGC 2 cut(s) 744, 2401
MvaI CCWGG 4 cut(s) 1911, 2604, 2713, 2757
MwoI GCNNNNNNNGC 9 cut(s) 80, 277, 1271, 1694, 1703, 1958, 1967, 2090, 2626
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 2 cut(s) 326, 1011
NcoI CCATGG 1 cut(s) 1922
NdeI CATATG 2 cut(s) 690, 1438
NlaIV GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
NmuCI GTSAC 1 cut(s) 2824
NsbI TGCGCA 1 cut(s) 830
NsiI ATGCAT 3 cut(s) 668, 1904, 2103
NspI RCATGY 5 cut(s) 670, 1906, 2270, 2293, 2504
NspV TTCGAA 2 cut(s) 230, 2706
OliI CACNNNNGTG 1 cut(s) 1735
PaeI GCATGC 2 cut(s) 1906, 2270
PagI TCATGA 1 cut(s) 730
PciI ACATGT 2 cut(s) 2289, 2500
PctI GAATGC 2 cut(s) 744, 2401
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 8 cut(s) 53, 227, 752, 1052, 1135, 2015, 2150, 2279
PflMI CCANNNNNTGG 1 cut(s) 788
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 1 cut(s) 2779
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 2779
Ppu21I YACGTR 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 1238
PscI ACATGT 2 cut(s) 2289, 2500
PsiI TTATAA 1 cut(s) 2432
Psp124BI GAGCTC 1 cut(s) 2892
Psp5II RGGWCCY 1 cut(s) 1238
Psp6I CCWGG 4 cut(s) 1909, 2602, 2711, 2755
PspFI CCCAGC 1 cut(s) 1567
PspGI CCWGG 4 cut(s) 1909, 2602, 2711, 2755
PspN4I GGNNCC 8 cut(s) 61, 519, 794, 1009, 1239, 1473, 1536, 1920
PspOMI GGGCCC 2 cut(s) 1007, 1534
PspPI GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
PspPPI RGGWCCY 1 cut(s) 1238
PstI CTGCAG 2 cut(s) 175, 1696
PstNI CAGNNNCTG 1 cut(s) 268
PsuI RGATCY 2 cut(s) 1177, 2606
PvuI CGATCG 1 cut(s) 91
PvuII CAGCTG 2 cut(s) 28, 1507
RsaI GTAC 8 cut(s) 182, 525, 610, 794, 1124, 2223, 2425, 2677
RsaNI GTAC 8 cut(s) 181, 524, 609, 793, 1123, 2222, 2424, 2676
RseI CAYNNNNRTG 1 cut(s) 1735
SacI GAGCTC 1 cut(s) 2892
SaqAI TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
Sau96I GGNCC 6 cut(s) 259, 1007, 1008, 1238, 1534, 1535
SchI GAGTC 1 cut(s) 2780
ScrFI CCNGG 6 cut(s) 326, 1011, 1911, 2604, 2713, 2757
SduI GDGCHC 4 cut(s) 904, 1011, 1538, 2892
SexAI ACCWGGT 1 cut(s) 2711
SfaNI GCATC 6 cut(s) 870, 1102, 1372, 1589, 2165, 2358
SfcI CTRYAG 3 cut(s) 171, 504, 1692
SfoI GGCGCC 1 cut(s) 61
SfuI TTCGAA 2 cut(s) 230, 2706
SinI GGWCC 2 cut(s) 259, 1238
SmiMI CAYNNNNRTG 1 cut(s) 1735
SnaBI TACGTA 1 cut(s) 180
SphI GCATGC 2 cut(s) 1906, 2270
SsiI CCGC 6 cut(s) 138, 296, 1678, 1832, 2258, 2918
SspDI GGCGCC 1 cut(s) 59
SspI AATATT 1 cut(s) 866
SspMI CTAG 6 cut(s) 198, 536, 1401, 1451, 2210, 2798
SstI GAGCTC 1 cut(s) 2892
StyD4I CCNGG 6 cut(s) 324, 1009, 1909, 2602, 2711, 2755
StyI CCWWGG 1 cut(s) 1922
TaaI ACNGT 6 cut(s) 43, 445, 508, 679, 1542, 2333
TaiI ACGT 6 cut(s) 182, 630, 912, 984, 996, 2831
TaqI TCGA 7 cut(s) 87, 230, 853, 1498, 2170, 2706, 2907
TaqII GACCGA 1 cut(s) 11
TatI WGTACW 2 cut(s) 1122, 2675
TfiI GAWTC 8 cut(s) 53, 227, 752, 1052, 1135, 2015, 2150, 2279
Tru1I TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
Tru9I TTAA 9 cut(s) 185, 303, 351, 447, 572, 806, 2217, 2310, 2592
TscAI CASTG 6 cut(s) 682, 1233, 1536, 1680, 1968, 2927
TseFI GTSAC 1 cut(s) 2824
Tsp45I GTSAC 1 cut(s) 2824
TspDTI ATGAA 9 cut(s) 455, 957, 1029, 1094, 1098, 1266, 1424, 1854, 1863
TspRI CASTG 6 cut(s) 682, 1233, 1536, 1680, 1968, 2927
Van91I CCANNNNNTGG 1 cut(s) 788
VpaK11BI GGWCC 2 cut(s) 259, 1238
XapI RAATTY 5 cut(s) 640, 1158, 1207, 1974, 2350
XbaI TCTAGA 1 cut(s) 2209
XceI RCATGY 5 cut(s) 670, 1906, 2270, 2293, 2504
XcmI CCANNNNNNNNNTGG 2 cut(s) 1734, 2463
XmiI GTMKAC 2 cut(s) 1588, 2326
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 6 cut(s) 198, 536, 1401, 1451, 2210, 2798
Zsp2I ATGCAT 3 cut(s) 668, 1904, 2103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.