Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008923

Physical Location & Seq

Genomic Coordinates Reverse (-)

48224149 .. 48229027

Gene Structure 4879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1389300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGCACCTATTGGGGTTGAATTGCTTGTTCAAGATCACCATGTAATGATGGATAATGGGATTCTCCAAGTGACGCTATCAAAGCCAGAGGGAATCGTGACTGGAATTCGATACAATGGCATCGATAACTTGCTTGAAATTCGTAACGATGAATCTAACAGAGGGTACTGGGACCTTGTTTGGAACTCAGCCACTACTGGAACAACAGGAATATTTGATGTGATCAAAGGAACAAGCTTTACGATTATAATGGAAAATGAAGAACAGGTGGAGCTCTCTTTCACAAGAACTTGGGATCCCTCTCAAGGGGGCAAACTCGTACCCTTGAATATTGATAAAAGGTTCATTATGCTTCGAGGTTCTTCAGGCTTCTATTCCTACGCCATTTACGAGCACTTGAAGGACTGGCCTGCTTTCGAGCTTGGAGAAACCAGAATTGCCTTCAAACTCAGAAAAGACAAGTTTCACTACATGGCCATGGCGGACAATAGGCAGAGATACATGCCCTTGCCTGACGACCGTTCACCACCGAGAGGCCAAGCCCTGGCCTATCCGGAGGCCGTTCTTCTTGTCAACCCTGTGGAGCCGGAGCTTAAAGGAGAAGTGGATGACAAGTACCAATATTCATGTGACAACAAGGATAATAAGGTTCATGGATGGATATGCACCGAGCCGCCAGTGGGGTTCTGGCAAATTACCCCGAGCACTGAGTTTCGATCTGGTGGACCCTTTAAGCAGAACCTCACTTCCCATGTTGGCCCCACCACCCTTGCGATGTTTCTAAGTGCACATTATGCTGGAGAAGATTTGGTGCCAAAATTTGCAGCGGGTGAGGAATGGAAGAAAGTTTTTGGGCCAGTTTTTATGTATGTTAATTCCGCATATGAAGGAAATGACCCACTTTCGTTATGGGAGGATGCTAAATCACAGATGGAGATGGAAGTCCAGTGCTGGCCCTACAGCTTCCCAGCATCTGAGGAATTTCCCAAGTCATACCAACGGGGTAATGTTAGGGGCAGACTACTTATTCAAGATAGATACATAAGCAACGATTATATATCTGTCAATGGTGCGTATGTTGGGTTAGCCCTGCCAGGAGACATTGGATCGTGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCACAACTGATGAAGACGGCTACTTTTGCATCAATGGGATACGCACGGGCGATTATAATCTGAATGCATCAGTCCCTGGTTTTATTGGAGATTATCATTACGATGTTGTTATGACTATAACCTCAGGTTGTGACATTGATATGGGTGATCTTGTATATGAGCCTCCCAGAGATGGCCCTACTTTATGGGAAATAGGCATTCCGGATCGTTCTGCTGCAGAGTTTTATGTTCCCGACCCTAATCCAAAGTACATTAACAAACTCTTCGTCAATCATCCTGACAGGTTTAGGCAGTATGGACTGTGGGAAAGATACTCAGAGTTATATTCTGATCAAGACTTGGTTTATACCGTTGGTGTCAGTGACTACAGCAAAGACTGGTTCTTTGCTCAGGTTACCAGGAAAAATGAAGATAATAAATATCAAGGAACTACTTGGCAAATTAAATTCAATCTTGACAATTTAGACCAAACTGGTTCCTACAAGCTGAGAGTAGCGCTTGCTTCTGCAACTTTTTCTGAATTGCAGGTTCGGGTGAATGATCCAAAGGCAAATCGCCCTCTATTCACGAGCGGGATGATAGGGAGAGATAACTCAATAGCAAGGCATGGAATCCACGGGCTTTATTGGCTTTACAATGTGGACGTACCAAGCTCTCGGCTTGTCGAGGGAGATAATATAATCTATCTGACGCAACCAAGAAGCACAGGCCCTTTCCAGGGCATTATGTATGATTATCTTCGCTTTGAAGGCCCCTCATCTCCAAGCTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

640

Amino Acids

72.96

Weight (kDa)

4.96

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	6 - 202	9.4e-98	Rhamnogalacturonate lyase family
fn3_3	PF14686	356 - 428	5.5e-22	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	442 - 629	2.1e-53	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09890 AT1G09890 AT1G09890 AT1G09890 AT1G09890
fragaria_vesca	FvH4_5g34111
malus_domestica	MD08G1205800.v1.1 MD15G1389300.v1.1
prunus_persica	Prupe.1G538300_v2.0.a1
pyrus_communis	pycom08g17790 pycom08g17800
rosa_chinensis	RchiOBHm_Chr7g0233621
rosa_laevigata	RLG00000001248
rosa_multiflora	Rmu_sc0003712.1_g000013
rosa_roxburghii	Rroxscaffold_3G00227110
rosa_rugosa	Rorug03G0282300 Rorug07G0062800 Rorug07G0281700
rosa_samantha	Rh7AG438200 Rh7BG410900 Rh7CG457800 Rh7DG427200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	248, 1200
Acc36I	ACCTGC	1 cut(s)	1660
AccB1I	GGYRCC	2 cut(s)	4, 811
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	1716
AccIII	TCCGGA	2 cut(s)	553, 1345
AciI	CCGC	5 cut(s)	482, 674, 827, 879, 1716
AclWI	GGATC	5 cut(s)	290, 303, 1114, 1356, 1679
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	5 cut(s)	105, 138, 818, 980, 1589
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	5 cut(s)	167, 321, 617, 1394, 1791
AfeI	AGCGCT	1 cut(s)	1641
AfiI	CCNNNNNNNGG	8 cut(s)	305, 306, 533, 544, 680, 1316, 1861, 1862
AgsI	TTSAA	9 cut(s)	20, 32, 137, 328, 400, 445, 1031, 1594, 1892
AjnI	CCWGG	5 cut(s)	543, 1093, 1219, 1541, 1860
AloI	GAACNNNNNNTCC	4 cut(s)	280, 312, 731, 763
AluBI	AGCT	8 cut(s)	237, 274, 421, 592, 963, 1630, 1797, 1911
AluI	AGCT	8 cut(s)	237, 274, 421, 592, 963, 1630, 1797, 1911
Alw21I	GWGCWC	4 cut(s)	276, 396, 707, 790
Alw26I	GTCTC	1 cut(s)	1092
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	5 cut(s)	290, 303, 1114, 1356, 1679
AlwNI	CAGNNNCTG	2 cut(s)	974, 1220
Ama87I	CYCGRG	1 cut(s)	700
Aor13HI	TCCGGA	2 cut(s)	553, 1345
Aor51HI	AGCGCT	1 cut(s)	1641
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	824, 1358
ApoI	RAATTY	5 cut(s)	105, 138, 818, 980, 1589
ArsI	GACNNNNNNTTYG	4 cut(s)	1395, 1427, 1511, 1543
AspLEI	GCGC	1 cut(s)	1642
AspS9I	GGNCC	9 cut(s)	172, 725, 758, 854, 954, 1143, 1319, 1853, 1895
AsuHPI	GGTGA	5 cut(s)	29, 516, 842, 1301, 1690
AvaI	CYCGRG	1 cut(s)	700
AvaII	GGWCC	3 cut(s)	172, 725, 1143
AxyI	CCTNAGG	1 cut(s)	1267
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	476
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	4, 811
BanII	GRGCYC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	1711
BbsI	GAAGAC	1 cut(s)	1164
Bbv12I	GWGCWC	4 cut(s)	276, 396, 707, 790
BbvI	GCAGC	2 cut(s)	836, 1345
BccI	CCATC	5 cut(s)	43, 651, 925, 931, 1310
BceAI	ACGGC	2 cut(s)	545, 1177
BciT130I	CCWGG	5 cut(s)	545, 1095, 1221, 1543, 1862
BciVI	GTATCC	1 cut(s)	1176
BclI	TGATCA	2 cut(s)	222, 1474
BcoDI	GTCTC	1 cut(s)	1092
BfmI	CTRYAG	3 cut(s)	958, 1359, 1510
BfoI	RGCGCY	1 cut(s)	1643
BfuAI	ACCTGC	1 cut(s)	1660
BfuI	GTATCC	1 cut(s)	1176
BisI	GCNGC	3 cut(s)	674, 825, 1359
BlsI	GCNGC	3 cut(s)	675, 826, 1360
Bme1390I	CCNGG	5 cut(s)	545, 1095, 1221, 1543, 1862
Bme18I	GGWCC	3 cut(s)	172, 725, 1143
BmeT110I	CYCGRG	1 cut(s)	700
BmgT120I	GGNCC	9 cut(s)	172, 725, 758, 854, 954, 1143, 1319, 1853, 1895
BmiI	GGNNCC	9 cut(s)	6, 173, 297, 585, 727, 760, 813, 1621, 1897
BmrFI	CCNGG	5 cut(s)	545, 1095, 1221, 1543, 1862
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	5 cut(s)	129, 907, 980, 1182, 1220
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	1164
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	1533
BpuEI	CTTGAG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	1200
BsaJI	CCNNGG	5 cut(s)	477, 543, 1219, 1759, 1861
BsaWI	WCCGGW	2 cut(s)	553, 1345
Bsc4I	CCNNNNNNNGG	8 cut(s)	305, 306, 533, 544, 680, 1316, 1861, 1862
Bse1I	ACTGG	9 cut(s)	106, 173, 202, 410, 677, 857, 946, 1526, 1621
Bse21I	CCTNAGG	1 cut(s)	1267
Bse8I	GATNNNNATC	1 cut(s)	1200
BseAI	TCCGGA	2 cut(s)	553, 1345
BseBI	CCWGG	5 cut(s)	545, 1095, 1221, 1543, 1862
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	5 cut(s)	477, 543, 1219, 1759, 1861
BseGI	GGATG	5 cut(s)	613, 662, 922, 1417, 1725
BseJI	GATNNNNATC	1 cut(s)	1200
BseLI	CCNNNNNNNGG	8 cut(s)	305, 306, 533, 544, 680, 1316, 1861, 1862
BseMII	CTCAG	8 cut(s)	201, 463, 699, 966, 1281, 1473, 1547, 1622
BseNI	ACTGG	9 cut(s)	106, 173, 202, 410, 677, 857, 946, 1526, 1621
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	2 cut(s)	836, 1345
BseYI	CCCAGC	1 cut(s)	967
Bsh1285I	CGRYCG	1 cut(s)	520
BshNI	GGYRCC	2 cut(s)	4, 811
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	4 cut(s)	276, 396, 707, 790
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	3 cut(s)	554, 587, 1346
BslFI	GGGAC	2 cut(s)	185, 1202
BslI	CCNNNNNNNGG	8 cut(s)	305, 306, 533, 544, 680, 1316, 1861, 1862
BsmAI	GTCTC	1 cut(s)	1092
BsmFI	GGGAC	2 cut(s)	185, 1202
BsmI	GAATGC	3 cut(s)	1127, 1213, 1341
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	4 cut(s)	276, 396, 707, 790
Bsp13I	TCCGGA	2 cut(s)	553, 1345
Bsp143I	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	5 cut(s)	482, 674, 827, 879, 1716
BspCNI	CTCAG	8 cut(s)	200, 462, 700, 967, 1280, 1472, 1546, 1623
BspDI	ATCGAT	1 cut(s)	123
BspEI	TCCGGA	2 cut(s)	553, 1345
BspLI	GGNNCC	9 cut(s)	6, 173, 297, 585, 727, 760, 813, 1621, 1897
BspMAI	CTGCAG	1 cut(s)	1363
BspMI	ACCTGC	1 cut(s)	1660
BspPI	GGATC	5 cut(s)	290, 303, 1114, 1356, 1679
BspT107I	GGYRCC	2 cut(s)	4, 811
BsrBI	CCGCTC	1 cut(s)	1716
BsrI	ACTGG	9 cut(s)	106, 173, 202, 410, 677, 857, 946, 1526, 1621
BssECI	CCNNGG	5 cut(s)	477, 543, 1219, 1759, 1861
BssMI	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
BssSI	CACGAG	1 cut(s)	1711
BssT1I	CCWWGG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	1711
Bst2UI	CCWGG	5 cut(s)	545, 1095, 1221, 1543, 1862
Bst4CI	ACNGT	3 cut(s)	521, 1446, 1495
Bst6I	CTCTTC	1 cut(s)	1412
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	3 cut(s)	411, 953, 1644
BstDEI	CTNAG	9 cut(s)	187, 449, 708, 782, 975, 1267, 1459, 1533, 1631
BstDSI	CCRYGG	2 cut(s)	477, 1759
BstEII	GGTNACC	1 cut(s)	1537
BstF5I	GGATG	5 cut(s)	613, 662, 922, 1417, 1725
BstH2I	RGCGCY	1 cut(s)	1643
BstHHI	GCGC	1 cut(s)	1642
BstKTI	GATC	9 cut(s)	37, 225, 298, 719, 1109, 1294, 1351, 1477, 1687
BstMAI	GTCTC	1 cut(s)	1092
BstMBI	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 794, 1170, 1771, 1893
BstNI	CCWGG	5 cut(s)	545, 1095, 1221, 1543, 1862
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	1537
BstSCI	CCNGG	5 cut(s)	543, 1093, 1219, 1541, 1860
BstSFI	CTRYAG	3 cut(s)	958, 1359, 1510
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	2 cut(s)	836, 1345
BstV2I	GAAGAC	1 cut(s)	1164
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	1267
BsuI	GTATCC	1 cut(s)	1176
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	2 cut(s)	477, 1759
BtgZI	GCGATG	1 cut(s)	788
BtsCI	GGATG	5 cut(s)	613, 662, 922, 1417, 1725
BtsIMutI	CAGTG	4 cut(s)	684, 705, 953, 1510
BveI	ACCTGC	1 cut(s)	1660
Cac8I	GCNNGC	3 cut(s)	411, 953, 1644
CaiI	CAGNNNCTG	2 cut(s)	974, 1220
CfoI	GCGC	1 cut(s)	1642
Cfr13I	GGNCC	9 cut(s)	172, 725, 758, 854, 954, 1143, 1319, 1853, 1895
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	2 cut(s)	82, 1843
Csp6I	GTAC	5 cut(s)	166, 320, 616, 1393, 1790
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	8 cut(s)	41, 472, 478, 502, 627, 653, 752, 1751
CviQI	GTAC	5 cut(s)	166, 320, 616, 1393, 1790
DdeI	CTNAG	9 cut(s)	187, 449, 708, 782, 975, 1267, 1459, 1533, 1631
DpnI	GATC	9 cut(s)	36, 224, 297, 718, 1108, 1293, 1350, 1476, 1686
DpnII	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	1412
EarI	CTCTTC	1 cut(s)	1412
EciI	GGCGGA	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	3 cut(s)	172, 725, 1143
Eco47III	AGCGCT	1 cut(s)	1641
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	1267
Eco88I	CYCGRG	1 cut(s)	700
Eco91I	GGTNACC	1 cut(s)	1537
EcoICRI	GAGCTC	1 cut(s)	274
EcoO109I	RGGNCCY	3 cut(s)	172, 1853, 1895
EcoO65I	GGTNACC	1 cut(s)	1537
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	5 cut(s)	543, 1093, 1219, 1541, 1860
EcoT14I	CCWWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	1213
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	8 cut(s)	44, 475, 481, 505, 630, 656, 755, 1754
FaqI	GGGAC	2 cut(s)	185, 1202
FatI	CATG	8 cut(s)	40, 471, 477, 501, 626, 652, 751, 1750
FauI	CCCGC	2 cut(s)	820, 1709
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	2 cut(s)	222, 1474
Fnu4HI	GCNGC	3 cut(s)	674, 825, 1359
FokI	GGATG	5 cut(s)	620, 669, 929, 1404, 1732
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	674, 825, 1359
GlaI	GCGC	1 cut(s)	1641
GluI	GCNGC	3 cut(s)	674, 825, 1359
GsaI	CCCAGC	1 cut(s)	971
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	1643
HapII	CCGG	3 cut(s)	554, 587, 1346
HgaI	GACGC	2 cut(s)	82, 1843
HhaI	GCGC	1 cut(s)	1642
Hin1II	CATG	8 cut(s)	44, 475, 481, 505, 630, 656, 755, 1754
Hin6I	GCGC	1 cut(s)	1640
HinP1I	GCGC	1 cut(s)	1640
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	4 cut(s)	61, 93, 152, 1755
HpaII	CCGG	3 cut(s)	554, 587, 1346
HphI	GGTGA	5 cut(s)	29, 516, 842, 1301, 1690
Hpy166II	GTNNAC	5 cut(s)	524, 574, 725, 788, 1786
Hpy188I	TCNGA	7 cut(s)	452, 976, 1206, 1462, 1474, 1663, 1833
Hpy8I	GTNNAC	5 cut(s)	524, 574, 725, 788, 1786
HpyAV	CCTTC	4 cut(s)	394, 451, 881, 1886
HpyCH4III	ACNGT	3 cut(s)	521, 1446, 1495
HpyCH4IV	ACGT	1 cut(s)	1788
HpyCH4V	TGCA	9 cut(s)	666, 788, 824, 1125, 1173, 1211, 1361, 1652, 1669
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 794, 1170, 1771, 1893
HpyF3I	CTNAG	9 cut(s)	187, 449, 708, 782, 975, 1267, 1459, 1533, 1631
HpySE526I	ACGT	1 cut(s)	1788
Hsp92II	CATG	8 cut(s)	44, 475, 481, 505, 630, 656, 755, 1754
HspAI	GCGC	1 cut(s)	1640
Kpn2I	TCCGGA	2 cut(s)	553, 1345
Ksp22I	TGATCA	2 cut(s)	222, 1474
Kzo9I	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
LmnI	GCTCC	4 cut(s)	271, 583, 589, 1916
Lsp1109I	GCAGC	2 cut(s)	836, 1345
LweI	GCATC	5 cut(s)	129, 907, 980, 1182, 1220
MaeII	ACGT	1 cut(s)	1788
MaeIII	GTNAC	7 cut(s)	70, 97, 143, 629, 1274, 1505, 1537
MalI	GATC	9 cut(s)	36, 224, 297, 718, 1108, 1293, 1350, 1476, 1686
MbiI	CCGCTC	1 cut(s)	1716
MboI	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
MboII	GAAGA	9 cut(s)	272, 354, 557, 815, 853, 1169, 1399, 1565, 1874
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	4 cut(s)	276, 396, 707, 790
MlsI	TGGCCA	1 cut(s)	476
MluNI	TGGCCA	1 cut(s)	476
Mox20I	TGGCCA	1 cut(s)	476
Mph1103I	ATGCAT	1 cut(s)	1213
MroI	TCCGGA	2 cut(s)	553, 1345
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	5 cut(s)	594, 732, 873, 1398, 1587
MslI	CAYNNNNRTG	3 cut(s)	476, 1245, 1283
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	3 cut(s)	554, 587, 1346
MspR9I	CCNGG	5 cut(s)	545, 1095, 1221, 1543, 1862
Mva1269I	GAATGC	3 cut(s)	1127, 1213, 1341
MvaI	CCWGG	5 cut(s)	545, 1095, 1221, 1543, 1862
MwoI	GCNNNNNNNGC	5 cut(s)	82, 794, 1170, 1771, 1893
NcoI	CCATGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
NlaIII	CATG	8 cut(s)	44, 475, 481, 505, 630, 656, 755, 1754
NlaIV	GGNNCC	9 cut(s)	6, 173, 297, 585, 727, 760, 813, 1621, 1897
NmeAIII	GCCGAG	1 cut(s)	1780
NmuCI	GTSAC	5 cut(s)	70, 97, 629, 1274, 1505
NsiI	ATGCAT	1 cut(s)	1213
NspI	RCATGY	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	3 cut(s)	1127, 1213, 1341
PfeI	GAWTC	4 cut(s)	61, 93, 152, 1755
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	675, 826, 1360
PpuMI	RGGWCCY	1 cut(s)	172
PsiI	TTATAA	2 cut(s)	248, 1200
Psp124BI	GAGCTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	5 cut(s)	543, 1093, 1219, 1541, 1860
PspEI	GGTNACC	1 cut(s)	1537
PspFI	CCCAGC	1 cut(s)	967
PspGI	CCWGG	5 cut(s)	543, 1093, 1219, 1541, 1860
PspN4I	GGNNCC	9 cut(s)	6, 173, 297, 585, 727, 760, 813, 1621, 1897
PspPI	GGNCC	9 cut(s)	172, 725, 758, 854, 954, 1143, 1319, 1853, 1895
PspPPI	RGGWCCY	1 cut(s)	172
PsrI	GAACNNNNNNTAC	2 cut(s)	223, 255
PstI	CTGCAG	1 cut(s)	1363
PstNI	CAGNNNCTG	2 cut(s)	974, 1220
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	5 cut(s)	167, 321, 617, 1394, 1791
RsaNI	GTAC	5 cut(s)	166, 320, 616, 1393, 1790
RseI	CAYNNNNRTG	3 cut(s)	476, 1245, 1283
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	5 cut(s)	594, 732, 873, 1398, 1587
SatI	GCNGC	3 cut(s)	674, 825, 1359
Sau3AI	GATC	9 cut(s)	34, 222, 295, 716, 1106, 1291, 1348, 1474, 1684
Sau96I	GGNCC	9 cut(s)	172, 725, 758, 854, 954, 1143, 1319, 1853, 1895
ScrFI	CCNGG	5 cut(s)	545, 1095, 1221, 1543, 1862
SduI	GDGCHC	4 cut(s)	276, 396, 707, 790
SfaNI	GCATC	5 cut(s)	129, 907, 980, 1182, 1220
SfcI	CTRYAG	3 cut(s)	958, 1359, 1510
SinI	GGWCC	3 cut(s)	172, 725, 1143
SmiMI	CAYNNNNRTG	3 cut(s)	476, 1245, 1283
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SsiI	CCGC	5 cut(s)	482, 674, 827, 879, 1716
SspI	AATATT	3 cut(s)	213, 331, 623
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	5 cut(s)	543, 1093, 1219, 1541, 1860
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	521, 1446, 1495
TaiI	ACGT	1 cut(s)	1791
TaqI	TCGA	6 cut(s)	109, 123, 355, 417, 715, 1809
TatI	WGTACW	1 cut(s)	1392
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	4 cut(s)	61, 93, 152, 1755
Tru1I	TTAA	5 cut(s)	594, 732, 873, 1398, 1587
Tru9I	TTAA	5 cut(s)	594, 732, 873, 1398, 1587
TscAI	CASTG	4 cut(s)	684, 712, 953, 1510
TseFI	GTSAC	5 cut(s)	70, 97, 629, 1274, 1505
TseI	GCWGC	2 cut(s)	824, 1358
Tsp45I	GTSAC	5 cut(s)	70, 97, 629, 1274, 1505
TspDTI	ATGAA	8 cut(s)	165, 273, 334, 615, 641, 900, 1170, 1566
TspRI	CASTG	4 cut(s)	684, 712, 953, 1510
Van91I	CCANNNNNTGG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	3 cut(s)	172, 725, 1143
XapI	RAATTY	5 cut(s)	105, 138, 818, 980, 1589
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	2 cut(s)	684, 906
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.