Rhamnogalacturonate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09890 AT1G09890 AT1G09890 AT1G09890 AT1G09890 |
| fragaria_vesca | FvH4_5g34111 |
| malus_domestica | MD08G1205800.v1.1 MD15G1389300.v1.1 |
| prunus_persica | Prupe.1G538300_v2.0.a1 |
| pyrus_communis | pycom08g17790 pycom08g17800 |
| rosa_chinensis | RchiOBHm_Chr7g0233621 |
| rosa_laevigata | RLG00000001248 |
| rosa_multiflora | Rmu_sc0003712.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00227110 |
| rosa_rugosa | Rorug03G0282300 Rorug07G0062800 Rorug07G0281700 |
| rosa_samantha | Rh7AG438200 Rh7BG410900 Rh7CG457800 Rh7DG427200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 270 |
| AcsI | RAATTY | 4 cut(s) | 29, 58, 217, 322 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AfaI | GTAC | 2 cut(s) | 153, 336 |
| AgsI | TTSAA | 1 cut(s) | 211 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 159, 191 |
| AluBI | AGCT | 1 cut(s) | 229 |
| AluI | AGCT | 1 cut(s) | 229 |
| Alw26I | GTCTC | 2 cut(s) | 255, 414 |
| Ama87I | CYCGRG | 1 cut(s) | 118 |
| ApoI | RAATTY | 4 cut(s) | 29, 58, 217, 322 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 292 |
| AvaI | CYCGRG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 2 cut(s) | 255, 414 |
| BfaI | CTAG | 2 cut(s) | 138, 317 |
| BmeT110I | CYCGRG | 1 cut(s) | 118 |
| BseGI | GGATG | 1 cut(s) | 91 |
| BseMII | CTCAG | 2 cut(s) | 427, 474 |
| BseRI | GAGGAG | 1 cut(s) | 432 |
| BsiHKCI | CYCGRG | 1 cut(s) | 118 |
| BsmAI | GTCTC | 2 cut(s) | 255, 414 |
| BsoBI | CYCGRG | 1 cut(s) | 118 |
| Bsp143I | GATC | 1 cut(s) | 156 |
| BspCNI | CTCAG | 2 cut(s) | 426, 473 |
| BssMI | GATC | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 3 cut(s) | 79, 101, 425 |
| BstDEI | CTNAG | 3 cut(s) | 17, 413, 460 |
| BstF5I | GGATG | 1 cut(s) | 91 |
| BstKTI | GATC | 1 cut(s) | 159 |
| BstMAI | GTCTC | 2 cut(s) | 255, 414 |
| BstMBI | GATC | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 91 |
| BtsIMutI | CAGTG | 1 cut(s) | 430 |
| Csp6I | GTAC | 2 cut(s) | 152, 335 |
| CviAII | CATG | 1 cut(s) | 54 |
| CviJI | RGCY | 1 cut(s) | 229 |
| CviKI_1 | RGCY | 1 cut(s) | 229 |
| CviQI | GTAC | 2 cut(s) | 152, 335 |
| DdeI | CTNAG | 3 cut(s) | 17, 413, 460 |
| DpnI | GATC | 1 cut(s) | 158 |
| DpnII | GATC | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| Eco88I | CYCGRG | 1 cut(s) | 118 |
| EcoRI | GAATTC | 1 cut(s) | 322 |
| FaeI | CATG | 1 cut(s) | 57 |
| FaiI | YATR | 8 cut(s) | 55, 72, 74, 270, 331, 333, 352, 392 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 218, 250, 277, 309 |
| FatI | CATG | 1 cut(s) | 53 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FokI | GGATG | 1 cut(s) | 98 |
| FspBI | CTAG | 2 cut(s) | 138, 317 |
| Hin1II | CATG | 1 cut(s) | 57 |
| HindIII | AAGCTT | 1 cut(s) | 227 |
| HinfI | GANTC | 4 cut(s) | 167, 288, 340, 470 |
| Hpy166II | GTNNAC | 1 cut(s) | 152 |
| Hpy188I | TCNGA | 3 cut(s) | 298, 416, 463 |
| Hpy188III | TCNNGA | 1 cut(s) | 118 |
| Hpy8I | GTNNAC | 1 cut(s) | 152 |
| HpyAV | CCTTC | 1 cut(s) | 303 |
| HpyCH4III | ACNGT | 3 cut(s) | 79, 101, 425 |
| HpyCH4V | TGCA | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 3 cut(s) | 17, 413, 460 |
| Hsp92II | CATG | 1 cut(s) | 57 |
| Kzo9I | GATC | 1 cut(s) | 156 |
| LpnPI | CCDG | 1 cut(s) | 290 |
| MaeI | CTAG | 2 cut(s) | 138, 317 |
| MalI | GATC | 1 cut(s) | 158 |
| MboI | GATC | 1 cut(s) | 156 |
| MboII | GAAGA | 4 cut(s) | 173, 226, 297, 446 |
| MluCI | AATT | 5 cut(s) | 29, 58, 217, 305, 322 |
| MlyI | GAGTC | 1 cut(s) | 479 |
| MmeI | TCCRAC | 1 cut(s) | 157 |
| MnlI | CCTC | 3 cut(s) | 57, 373, 410 |
| MroXI | GAANNNNTTC | 1 cut(s) | 292 |
| MseI | TTAA | 1 cut(s) | 368 |
| MslI | CAYNNNNRTG | 1 cut(s) | 349 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 1 cut(s) | 156 |
| NlaIII | CATG | 1 cut(s) | 57 |
| PaeR7I | CTCGAG | 1 cut(s) | 118 |
| PdmI | GAANNNNTTC | 1 cut(s) | 292 |
| PfeI | GAWTC | 3 cut(s) | 167, 288, 340 |
| PleI | GAGTC | 1 cut(s) | 478 |
| PpsI | GAGTC | 1 cut(s) | 478 |
| PsiI | TTATAA | 1 cut(s) | 270 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 124, 156 |
| RsaI | GTAC | 2 cut(s) | 153, 336 |
| RsaNI | GTAC | 2 cut(s) | 152, 335 |
| RseI | CAYNNNNRTG | 1 cut(s) | 349 |
| SaqAI | TTAA | 1 cut(s) | 368 |
| Sau3AI | GATC | 1 cut(s) | 156 |
| SchI | GAGTC | 1 cut(s) | 479 |
| SetI | ASST | 5 cut(s) | 9, 208, 231, 279, 397 |
| Sfr274I | CTCGAG | 1 cut(s) | 118 |
| SlaI | CTCGAG | 1 cut(s) | 118 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 349 |
| SmlI | CTYRAG | 1 cut(s) | 118 |
| SmoI | CTYRAG | 1 cut(s) | 118 |
| Sse9I | AATT | 5 cut(s) | 29, 58, 217, 305, 322 |
| SspMI | CTAG | 2 cut(s) | 138, 317 |
| TaaI | ACNGT | 3 cut(s) | 79, 101, 425 |
| TaqI | TCGA | 2 cut(s) | 119, 159 |
| TasI | AATT | 5 cut(s) | 29, 58, 217, 305, 322 |
| TatI | WGTACW | 1 cut(s) | 151 |
| TfiI | GAWTC | 3 cut(s) | 167, 288, 340 |
| Tru1I | TTAA | 1 cut(s) | 368 |
| Tru9I | TTAA | 1 cut(s) | 368 |
| TscAI | CASTG | 1 cut(s) | 430 |
| TspDTI | ATGAA | 5 cut(s) | 42, 114, 180, 315, 447 |
| TspGWI | ACGGA | 2 cut(s) | 137, 352 |
| TspRI | CASTG | 1 cut(s) | 430 |
| XapI | RAATTY | 4 cut(s) | 29, 58, 217, 322 |
| XhoI | CTCGAG | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 292 |
| XspI | CTAG | 2 cut(s) | 138, 317 |