Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008923

Physical Location & Seq

Genomic Coordinates Reverse (-)

11128184 .. 11133654

Gene Structure 5471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGCCACCTATTGGGGTGCAACTGCTTATTCAAGATCGTCATGTAATGATGGATAATGGGTTTGTCCAAGTGACATTGTCAAATCCAGAGGGAATAGTCACTGGAATACGATACAATGGCATCGATAACTTGCTCGAGATTCGTAATGAAGAAACTAATAGAGGCTACTGGGACCTAGTTTGGAGTGAAGCGACCACCGGAACAACAGGAATATTTGATGTGATCAAAGGAACAAAGTTTGAGGTTATAGTGGAAACTGATGATCAGGTGGAGCTCTCTTTCACACGAACCTGGGATCCCTCCCAGAGGGGCAAGATCGTTCCCTTAAATATTGATAAAAGGTTCATAATGGTTCGAGGTTCTTCAGGCTTCTACTCATACGCTATCTACGAGCACTTACAGGAATGGCCTGCTTTTGAGCTTGGAGAAACTAGAATTGCGTTCAAACTCAGAAAAGACAAGTTTCACTACATGGCCATGGCAGATAACAGGCAAAGATACATGCCGTTGCCTGATGACCGTTTACCACCCAGAGGCCAACCCCTGGCATATCCCGAGGCAGTTCTACTCGTCAATCCTAACGAGCCTGATCTTAAAGGAGAAGTGGATGACAAGTACCAATACTCATGTGACAACAAGGATAGCCGGGTACATGGGTGGATATGCACTGATCCGCCGGTGGGATTGTGGCAAATTACACCCAGCAACGAGTTCCGAACTGGTGGACCTGTTAAGCAAAACCTTACCTCTCATGTTGGCCCTACCACCCTTGCGGTGTTTCTAAGCGCTCATTATTCCGGAGACGATCTGGTGCCAAAATTTGCAGCTGGTGAATATTGGAAGAAAGTTTTCGGCCCTGTTTTTATGTATTTCAATTCGGAATATGCAGGAAATGACCCGTTGATTTCACTATGGGAGGATGCTAAAATACAAATGATGATTGAAGTCCAAAGCTGGCCATACAGCTTCCCAGCATCTGAAGATTTTCCCAAGTCGGACCAACGTGGTGACGTTAGTGGTAGACTACTTATCCGAGACGGATATATTAGCGATGATTATATATCAGCCAATGGTGCATATGTCGGGTTAGCCCCGCCAGGAGACGTTGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTTTGGACAACAACAGACGAGGATGGCTACTTTTCTATCAATGACATACGGACTGGTGATTATAACCTTAATGCATGGGTCCCTGGTTTTATTGGAGATTATCAATATGATGATGTTATCACTATAACCTCAGGTTGTGAGGTTGATATGGGTGAGCTTGTGTATAAGCCTCCTAGAGATGGCCCAACCTTATGGGAAATAGGCATTCCAGATCGATCTGCTGCAGAGTTCTATGTTCCTGATCCTAATCCCAACTACATTAACAATCTCTATGTCAACCATCCGGACAGGTTTAGGCAGTATGGACTGTGGGATAGATACACAGAGTTATATCCTGATGCAGACTTGGTTTACACGGTTGGTGTTAGTGACTATAGCAAAGACTGGTTCTTTGCTCAGGTTACCAGGAAGAAAGATGACAATAAGTATCAAGCAACAACTTGGCAAATCAAATTCAAGATTGATGATGTAGACAAGAACGGTACCTATAAGCTGAGAGTAGCACTTGCATCTGCAACACTTTCTGAATTACAGGTTCGAGTAAACAATCCAAAGGAAAATCCTCCTCTATTCACAAGTGGTTTGATAGGGAGGGACAATTCCATTGCAAGACATGGAATCCATGGCCTCTATTGGCTTTACAATGTCAATATACCGAGCTCTCGGCTTGTTGAGGGGGACAATACTATCTTTCTAACTCAACCAAGAAGCACTGGCCCTTTTCAAGGGATCATGTATGATTATATTCGCTTAGAAGGTCCCCCATCTGTAAGTTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

640

Amino Acids

73.07

Weight (kDa)

4.82

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	6 - 202	1.6e-99	Rhamnogalacturonate lyase family
fn3_3	PF14686	357 - 428	5.6e-28	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	443 - 631	4.3e-55	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09890 AT1G09890 AT1G09890 AT1G09890 AT1G09890
fragaria_vesca	FvH4_5g34111
malus_domestica	MD08G1205800.v1.1 MD15G1389300.v1.1
prunus_persica	Prupe.1G538300_v2.0.a1
pyrus_communis	pycom08g17790 pycom08g17800
rosa_chinensis	RchiOBHm_Chr7g0233621
rosa_laevigata	RLG00000001248
rosa_multiflora	Rmu_sc0003712.1_g000013
rosa_roxburghii	Rroxscaffold_3G00227110
rosa_rugosa	Rorug03G0282300 Rorug07G0062800 Rorug07G0281700
rosa_samantha	Rh7AG438200 Rh7BG410900 Rh7CG457800 Rh7DG427200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1203
Acc65I	GGTACC	1 cut(s)	1622
AccB1I	GGYRCC	2 cut(s)	811, 1622
AccB7I	CCANNNNNTGG	2 cut(s)	11, 544
AccI	GTMKAC	2 cut(s)	1021, 1611
AccIII	TCCGGA	2 cut(s)	797, 1423
AciI	CCGC	3 cut(s)	674, 773, 1094
AclWI	GGATC	5 cut(s)	290, 303, 665, 1376, 1877
AcoI	YGGCCR	2 cut(s)	474, 956
AcsI	RAATTY	2 cut(s)	818, 1592
AcuI	CTGAAG	2 cut(s)	348, 999
AfaI	GTAC	3 cut(s)	617, 651, 1624
AfeI	AGCGCT	1 cut(s)	787
AfiI	CCNNNNNNNGG	7 cut(s)	11, 306, 533, 544, 680, 1319, 1865
AgsI	TTSAA	6 cut(s)	32, 445, 874, 944, 1597, 1865
AhdI	GACNNNNNGTC	1 cut(s)	1108
AjnI	CCWGG	5 cut(s)	290, 543, 1096, 1222, 1544
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	8 cut(s)	274, 421, 827, 954, 966, 1297, 1633, 1800
AluI	AGCT	8 cut(s)	274, 421, 827, 954, 966, 1297, 1633, 1800
Alw21I	GWGCWC	3 cut(s)	276, 396, 1802
Alw26I	GTCTC	3 cut(s)	795, 1029, 1095
AlwI	GGATC	5 cut(s)	290, 303, 665, 1376, 1877
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	2 cut(s)	134, 554
Aor13HI	TCCGGA	2 cut(s)	797, 1423
Aor51HI	AGCGCT	1 cut(s)	787
AoxI	GGCC	9 cut(s)	407, 474, 535, 757, 853, 956, 1321, 1765, 1855
ApeKI	GCWGC	2 cut(s)	824, 1361
ApoI	RAATTY	2 cut(s)	818, 1592
ArsI	GACNNNNNNTTYG	2 cut(s)	1514, 1546
Asp700I	GAANNNNTTC	2 cut(s)	848, 984
Asp718I	GGTACC	1 cut(s)	1622
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	9 cut(s)	172, 725, 758, 854, 997, 1219, 1322, 1856, 1898
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	4 cut(s)	842, 1019, 1208, 1304
AvaI	CYCGRG	2 cut(s)	134, 554
AvaII	GGWCC	5 cut(s)	172, 725, 997, 1219, 1898
AxyI	CCTNAGG	1 cut(s)	1270
BaeI	ACNNNNGTAYC	2 cut(s)	641, 674
BalI	TGGCCA	2 cut(s)	476, 958
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	811, 1622
BanII	GRGCYC	2 cut(s)	276, 1802
Bbv12I	GWGCWC	3 cut(s)	276, 396, 1802
BbvI	GCAGC	2 cut(s)	836, 1348
BccI	CCATC	5 cut(s)	43, 1157, 1313, 1428, 1912
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	5 cut(s)	292, 545, 1098, 1224, 1546
BclI	TGATCA	2 cut(s)	222, 262
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	3 cut(s)	795, 1029, 1095
BfaI	CTAG	3 cut(s)	176, 432, 1314
BfmI	CTRYAG	2 cut(s)	1362, 1513
BfoI	RGCGCY	1 cut(s)	789
BisI	GCNGC	2 cut(s)	825, 1362
BlsI	GCNGC	2 cut(s)	826, 1363
Bme1390I	CCNGG	6 cut(s)	292, 545, 647, 1098, 1224, 1546
Bme18I	GGWCC	5 cut(s)	172, 725, 997, 1219, 1898
BmeRI	GACNNNNNGTC	1 cut(s)	1108
BmeT110I	CYCGRG	2 cut(s)	134, 554
BmgT120I	GGNCC	9 cut(s)	172, 725, 758, 854, 997, 1219, 1322, 1856, 1898
BmiI	GGNNCC	7 cut(s)	173, 297, 813, 1220, 1221, 1624, 1900
BmrFI	CCNGG	6 cut(s)	292, 545, 647, 1098, 1224, 1546
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	5 cut(s)	129, 910, 983, 1468, 1658
BmuI	ACTGGG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	1536
BpuMI	CCSGG	1 cut(s)	647
Bsa29I	ATCGAT	2 cut(s)	123, 1354
BsaBI	GATNNNNATC	1 cut(s)	1386
BsaJI	CCNNGG	6 cut(s)	291, 477, 543, 555, 1222, 1762
BsaWI	WCCGGW	3 cut(s)	197, 797, 1423
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 306, 533, 544, 680, 1319, 1865
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	6 cut(s)	106, 173, 724, 1198, 1529, 1858
Bse21I	CCTNAGG	1 cut(s)	1270
Bse3DI	GCAATG	1 cut(s)	1743
Bse8I	GATNNNNATC	1 cut(s)	1386
BseAI	TCCGGA	2 cut(s)	797, 1423
BseBI	CCWGG	5 cut(s)	292, 545, 1098, 1224, 1546
BseCI	ATCGAT	2 cut(s)	123, 1354
BseDI	CCNNGG	6 cut(s)	291, 477, 543, 555, 1222, 1762
BseGI	GGATG	4 cut(s)	613, 925, 1168, 1420
BseJI	GATNNNNATC	1 cut(s)	1386
BseLI	CCNNNNNNNGG	7 cut(s)	11, 306, 533, 544, 680, 1319, 1865
BseMI	GCAATG	1 cut(s)	1743
BseMII	CTCAG	4 cut(s)	463, 1284, 1550, 1625
BseNI	ACTGG	6 cut(s)	106, 173, 724, 1198, 1529, 1858
BseRI	GAGGAG	1 cut(s)	1695
BseXI	GCAGC	2 cut(s)	836, 1348
BseYI	CCCAGC	2 cut(s)	701, 970
BshFI	GGCC	9 cut(s)	409, 476, 537, 759, 855, 958, 1323, 1767, 1857
BshNI	GGYRCC	2 cut(s)	811, 1622
BshVI	ATCGAT	2 cut(s)	123, 1354
BsiHKAI	GWGCWC	3 cut(s)	276, 396, 1802
BsiHKCI	CYCGRG	2 cut(s)	134, 554
BsiSI	CCGG	5 cut(s)	198, 646, 677, 798, 1424
BslFI	GGGAC	5 cut(s)	185, 1205, 1748, 1832, 1884
BslI	CCNNNNNNNGG	7 cut(s)	11, 306, 533, 544, 680, 1319, 1865
BsmAI	GTCTC	3 cut(s)	795, 1029, 1095
BsmBI	CGTCTC	3 cut(s)	795, 1029, 1095
BsmFI	GGGAC	5 cut(s)	185, 1205, 1748, 1832, 1884
BsmI	GAATGC	2 cut(s)	1130, 1344
BsnI	GGCC	9 cut(s)	409, 476, 537, 759, 855, 958, 1323, 1767, 1857
BsoBI	CYCGRG	2 cut(s)	134, 554
Bsp1286I	GDGCHC	3 cut(s)	276, 396, 1802
Bsp13I	TCCGGA	2 cut(s)	797, 1423
Bsp19I	CCATGG	2 cut(s)	477, 1762
BspACI	CCGC	3 cut(s)	674, 773, 1094
BspANI	GGCC	9 cut(s)	409, 476, 537, 759, 855, 958, 1323, 1767, 1857
BspCNI	CTCAG	4 cut(s)	462, 1283, 1549, 1626
BspDI	ATCGAT	2 cut(s)	123, 1354
BspEI	TCCGGA	2 cut(s)	797, 1423
BspLI	GGNNCC	7 cut(s)	173, 297, 813, 1220, 1221, 1624, 1900
BspMAI	CTGCAG	1 cut(s)	1366
BspPI	GGATC	5 cut(s)	290, 303, 665, 1376, 1877
BspT107I	GGYRCC	2 cut(s)	811, 1622
BsrDI	GCAATG	1 cut(s)	1743
BsrFI	RCCGGY	1 cut(s)	676
BsrI	ACTGG	6 cut(s)	106, 173, 724, 1198, 1529, 1858
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	6 cut(s)	291, 477, 543, 555, 1222, 1762
BssT1I	CCWWGG	2 cut(s)	477, 1762
Bst2UI	CCWGG	5 cut(s)	292, 545, 1098, 1224, 1546
Bst4CI	ACNGT	4 cut(s)	521, 1449, 1498, 1622
BstC8I	GCNNGC	2 cut(s)	411, 956
BstDEI	CTNAG	6 cut(s)	449, 782, 1270, 1536, 1634, 1891
BstDSI	CCRYGG	2 cut(s)	477, 1762
BstEII	GGTNACC	1 cut(s)	1540
BstENI	CCTNNNNNAGG	2 cut(s)	304, 1863
BstF5I	GGATG	4 cut(s)	613, 925, 1168, 1420
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	788
BstMAI	GTCTC	3 cut(s)	795, 1029, 1095
BstMWI	GCNNNNNNNGC	1 cut(s)	1073
BstNI	CCWGG	5 cut(s)	292, 545, 1098, 1224, 1546
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	1540
BstSCI	CCNGG	6 cut(s)	290, 543, 645, 1096, 1222, 1544
BstSFI	CTRYAG	2 cut(s)	1362, 1513
BstV1I	GCAGC	2 cut(s)	836, 1348
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	1332
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	2 cut(s)	123, 1354
Bsu36I	CCTNAGG	1 cut(s)	1270
BsuRI	GGCC	9 cut(s)	409, 476, 537, 759, 855, 958, 1323, 1767, 1857
BsuTUI	ATCGAT	2 cut(s)	123, 1354
BtgI	CCRYGG	2 cut(s)	477, 1762
BtgZI	GCGATG	1 cut(s)	1065
BtsCI	GGATG	4 cut(s)	613, 925, 1168, 1420
BtsIMutI	CAGTG	3 cut(s)	99, 666, 1851
Cac8I	GCNNGC	2 cut(s)	411, 956
CaiI	CAGNNNCTG	1 cut(s)	977
CfoI	GCGC	1 cut(s)	788
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	9 cut(s)	172, 725, 758, 854, 997, 1219, 1322, 1856, 1898
ClaI	ATCGAT	2 cut(s)	123, 1354
Csp6I	GTAC	3 cut(s)	616, 650, 1623
CviQI	GTAC	3 cut(s)	616, 650, 1623
DdeI	CTNAG	6 cut(s)	449, 782, 1270, 1536, 1634, 1891
DriI	GACNNNNNGTC	1 cut(s)	1108
EaeI	YGGCCR	2 cut(s)	474, 956
Eam1105I	GACNNNNNGTC	1 cut(s)	1108
EciI	GGCGGA	1 cut(s)	663
Ecl136II	GAGCTC	2 cut(s)	274, 1800
Eco130I	CCWWGG	2 cut(s)	477, 1762
Eco24I	GRGCYC	2 cut(s)	276, 1802
Eco47I	GGWCC	5 cut(s)	172, 725, 997, 1219, 1898
Eco47III	AGCGCT	1 cut(s)	787
Eco53kI	GAGCTC	2 cut(s)	274, 1800
Eco57I	CTGAAG	2 cut(s)	348, 999
Eco81I	CCTNAGG	1 cut(s)	1270
Eco88I	CYCGRG	2 cut(s)	134, 554
Eco91I	GGTNACC	1 cut(s)	1540
EcoICRI	GAGCTC	2 cut(s)	274, 1800
EcoNI	CCTNNNNNAGG	2 cut(s)	304, 1863
EcoO109I	RGGNCCY	3 cut(s)	172, 1219, 1898
EcoO65I	GGTNACC	1 cut(s)	1540
EcoRII	CCWGG	5 cut(s)	290, 543, 1096, 1222, 1544
EcoT14I	CCWWGG	2 cut(s)	477, 1762
EcoT22I	ATGCAT	1 cut(s)	1216
EcoT38I	GRGCYC	2 cut(s)	276, 1802
ErhI	CCWWGG	2 cut(s)	477, 1762
Esp3I	CGTCTC	3 cut(s)	795, 1029, 1095
FaqI	GGGAC	5 cut(s)	185, 1205, 1748, 1832, 1884
FauI	CCCGC	1 cut(s)	1101
FauNDI	CATATG	1 cut(s)	1078
FbaI	TGATCA	2 cut(s)	222, 262
FblI	GTMKAC	2 cut(s)	1021, 1611
Fnu4HI	GCNGC	2 cut(s)	825, 1362
FokI	GGATG	4 cut(s)	620, 932, 1175, 1407
FriOI	GRGCYC	2 cut(s)	276, 1802
Fsp4HI	GCNGC	2 cut(s)	825, 1362
FspBI	CTAG	3 cut(s)	176, 432, 1314
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	2 cut(s)	825, 1362
GsaI	CCCAGC	2 cut(s)	705, 974
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	9 cut(s)	409, 476, 537, 759, 855, 958, 1323, 1767, 1857
HapII	CCGG	5 cut(s)	198, 646, 677, 798, 1424
HhaI	GCGC	1 cut(s)	788
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HincII	GTYRAC	1 cut(s)	1417
HindII	GTYRAC	1 cut(s)	1417
HinfI	GANTC	2 cut(s)	139, 1758
HpaII	CCGG	5 cut(s)	198, 646, 677, 798, 1424
HphI	GGTGA	4 cut(s)	842, 1019, 1208, 1304
Hpy166II	GTNNAC	7 cut(s)	524, 725, 1022, 1417, 1492, 1612, 1684
Hpy188I	TCNGA	7 cut(s)	452, 716, 880, 979, 997, 1034, 1666
Hpy8I	GTNNAC	7 cut(s)	524, 725, 1022, 1417, 1492, 1612, 1684
HpyAV	CCTTC	1 cut(s)	1889
HpyCH4III	ACNGT	4 cut(s)	521, 1449, 1498, 1622
HpyCH4IV	ACGT	3 cut(s)	1003, 1011, 1104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1073
HpyF3I	CTNAG	6 cut(s)	449, 782, 1270, 1536, 1634, 1891
HpySE526I	ACGT	3 cut(s)	1003, 1011, 1104
HspAI	GCGC	1 cut(s)	786
KflI	GGGWCCC	1 cut(s)	1219
Kpn2I	TCCGGA	2 cut(s)	797, 1423
KpnI	GGTACC	1 cut(s)	1626
Ksp22I	TGATCA	2 cut(s)	222, 262
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	836, 1348
LweI	GCATC	5 cut(s)	129, 910, 983, 1468, 1658
MaeI	CTAG	3 cut(s)	176, 432, 1314
MaeII	ACGT	3 cut(s)	1003, 1011, 1104
MaeIII	GTNAC	6 cut(s)	70, 97, 629, 1007, 1508, 1540
MboII	GAAGA	5 cut(s)	161, 354, 853, 992, 1561
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	3 cut(s)	276, 396, 1802
MlsI	TGGCCA	2 cut(s)	476, 958
MluCI	AATT	8 cut(s)	435, 693, 818, 874, 1139, 1592, 1667, 1738
MluNI	TGGCCA	2 cut(s)	476, 958
MmeI	TCCRAC	1 cut(s)	975
Mox20I	TGGCCA	2 cut(s)	476, 958
Mph1103I	ATGCAT	1 cut(s)	1216
MroI	TCCGGA	2 cut(s)	797, 1423
MroXI	GAANNNNTTC	2 cut(s)	848, 984
MscI	TGGCCA	2 cut(s)	476, 958
MseI	TTAA	5 cut(s)	326, 594, 732, 1209, 1401
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	2 cut(s)	476, 958
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	5 cut(s)	198, 646, 677, 798, 1424
MspR9I	CCNGG	6 cut(s)	292, 545, 647, 1098, 1224, 1546
Mva1269I	GAATGC	2 cut(s)	1130, 1344
MvaI	CCWGG	5 cut(s)	292, 545, 1098, 1224, 1546
MwoI	GCNNNNNNNGC	1 cut(s)	1073
NciI	CCSGG	1 cut(s)	647
NcoI	CCATGG	2 cut(s)	477, 1762
NdeI	CATATG	1 cut(s)	1078
NlaIV	GGNNCC	7 cut(s)	173, 297, 813, 1220, 1221, 1624, 1900
NmeAIII	GCCGAG	1 cut(s)	1783
NmuCI	GTSAC	5 cut(s)	70, 97, 629, 1007, 1508
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	2 cut(s)	1130, 1344
PdmI	GAANNNNTTC	2 cut(s)	848, 984
PfeI	GAWTC	2 cut(s)	139, 1758
PflFI	GACNNNGTC	1 cut(s)	76
PflMI	CCANNNNNTGG	2 cut(s)	11, 544
PkrI	GCNGC	2 cut(s)	826, 1363
PpuMI	RGGWCCY	3 cut(s)	172, 1219, 1898
PsiI	TTATAA	1 cut(s)	1203
Psp124BI	GAGCTC	2 cut(s)	276, 1802
Psp5II	RGGWCCY	3 cut(s)	172, 1219, 1898
Psp6I	CCWGG	5 cut(s)	290, 543, 1096, 1222, 1544
PspEI	GGTNACC	1 cut(s)	1540
PspFI	CCCAGC	2 cut(s)	701, 970
PspGI	CCWGG	5 cut(s)	290, 543, 1096, 1222, 1544
PspN4I	GGNNCC	7 cut(s)	173, 297, 813, 1220, 1221, 1624, 1900
PspPI	GGNCC	9 cut(s)	172, 725, 758, 854, 997, 1219, 1322, 1856, 1898
PspPPI	RGGWCCY	3 cut(s)	172, 1219, 1898
PstI	CTGCAG	1 cut(s)	1366
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	3 cut(s)	617, 651, 1624
RsaNI	GTAC	3 cut(s)	616, 650, 1623
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	2 cut(s)	276, 1802
SaqAI	TTAA	5 cut(s)	326, 594, 732, 1209, 1401
SatI	GCNGC	2 cut(s)	825, 1362
Sau96I	GGNCC	9 cut(s)	172, 725, 758, 854, 997, 1219, 1322, 1856, 1898
ScrFI	CCNGG	6 cut(s)	292, 545, 647, 1098, 1224, 1546
SduI	GDGCHC	3 cut(s)	276, 396, 1802
SfaNI	GCATC	5 cut(s)	129, 910, 983, 1468, 1658
SfcI	CTRYAG	2 cut(s)	1362, 1513
Sfr274I	CTCGAG	1 cut(s)	134
SgrAI	CRCCGGYG	1 cut(s)	676
SinI	GGWCC	5 cut(s)	172, 725, 997, 1219, 1898
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	8 cut(s)	435, 693, 818, 874, 1139, 1592, 1667, 1738
SsiI	CCGC	3 cut(s)	674, 773, 1094
SspI	AATATT	3 cut(s)	213, 331, 836
SspMI	CTAG	3 cut(s)	176, 432, 1314
SstI	GAGCTC	2 cut(s)	276, 1802
StyD4I	CCNGG	6 cut(s)	290, 543, 645, 1096, 1222, 1544
StyI	CCWWGG	2 cut(s)	477, 1762
TaaI	ACNGT	4 cut(s)	521, 1449, 1498, 1622
TaiI	ACGT	3 cut(s)	1006, 1014, 1107
TaqI	TCGA	5 cut(s)	123, 135, 355, 1354, 1678
TasI	AATT	8 cut(s)	435, 693, 818, 874, 1139, 1592, 1667, 1738
TfiI	GAWTC	2 cut(s)	139, 1758
Tru1I	TTAA	5 cut(s)	326, 594, 732, 1209, 1401
Tru9I	TTAA	5 cut(s)	326, 594, 732, 1209, 1401
TscAI	CASTG	3 cut(s)	106, 673, 1858
TseFI	GTSAC	5 cut(s)	70, 97, 629, 1007, 1508
TseI	GCWGC	2 cut(s)	824, 1361
Tsp45I	GTSAC	5 cut(s)	70, 97, 629, 1007, 1508
TspDTI	ATGAA	2 cut(s)	162, 334
TspGWI	ACGGA	2 cut(s)	1053, 1204
TspRI	CASTG	3 cut(s)	106, 673, 1858
Tth111I	GACNNNGTC	1 cut(s)	76
Van91I	CCANNNNNTGG	2 cut(s)	11, 544
VpaK11BI	GGWCC	5 cut(s)	172, 725, 997, 1219, 1898
XagI	CCTNNNNNAGG	2 cut(s)	304, 1863
XapI	RAATTY	2 cut(s)	818, 1592
XceI	RCATGY	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	2 cut(s)	1021, 1611
XmnI	GAANNNNTTC	2 cut(s)	848, 984
XspI	CTAG	3 cut(s)	176, 432, 1314
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.