Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008923

Physical Location & Seq

Genomic Coordinates Forward (+)

60383954 .. 60389187

Gene Structure 5234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGCCACCTATTGGGGTGCAACTGCTTATTCAAGATCGTCATGTAATGATGGATAATGGGTTTGTCCAAGTGACATTGTCAAATCCAGAGGGAATGGTCACTGGAATACGATACAATGGCATCGATAACTTGCTCGAGATTCGTAATGAAGAAACTAATAGAGGCTACTGGGACCTAGTTTGGAGTGAAGCGACCACAGGAACAACAGGAATATTTGATGTAATCAAAGGAACAAAGTTTGAGGTTATAGTGGAAAATGATGATCAGGTGGAGCTCTCCTTCACACGAACCTGGGATCTCTCCCAGAACCAGAAGGGCAAGCTCGTTCCCTTAAATATTGATAAAAGGTTCATAATGGTTCGAGGTTCTTCAGGCTTCTACTCATACGCTATCTACGAGCACTTACAGGAATGGCCTGCTTTTGAGCTCGGAGAAACTAGAATTGCGTTCAAACTCAGAAAAGACAAGTTTCACTACATGGCCATGGCAGATAACAGGCAAAGATACATGCCGTTGCCTGATGACCGTTTACCACCCAGAGGCCAACCCCTGGCGTATCCCGAGGCAGTTCTACTCGTCAATCCTATCGAGCCTGATCTTAAAGGAGAAGTGGATGACAAGTACCAATACTCATGTGACAACAAGGATAGCCGGGTACATGGGTGGATATGCACTGATCCGCCGGTGGGATTTTGGCAAATTACACCCAGCAACGAGTTCCGATCTGGTGGACCTGTTAAGCAAAACCTTACCTCTCATGTTGGCCCTACCACCCTTGCGGTGTTTCTAAGCGCTCATTATTCCGGAGACGATCTGGTGCCAAAATTTGCAGCTGGTGAATATTGGAAGAAAGTTTTCGGCCCTGTTTTTATGTATGTCAATTCGGAATATTTAGGAAATGACCCGTTGATTTCACTATGGGAGGATGCTAAAATACAAATGATGATTGAAGTCCAAAGCTGGCCATACAGCTTCCCAGCATCTGAAGATTTTCCCAAGTCGGACCAACGTGGTGACGTTAGTGGTAGATTACTTATCCGAGACGGATATATTAGCGATGATTATATATCAGCCAATGGTGCATATGTTGGGTTAGCCCCGCCAGGAGACGTTGGGTCATGGCAAAGAGAGTGCAAGGACTATCAATTTTGGACAACAACAGACGAGGATGGCTACTTTTCTATCAATGACATACGGACTGGTGATTATAACCTTAATGCATGGGTCCCTGGTTTTATTGGAGATTATCAATATGATGATGTTATCACTATAACCTCAGGTTGTGCGGTTGATATGGGTAAGCTTGTGTATGAGCCTCCTAGAGATGGCCCAACCTTTTGGGAAATAGGCATCCCAGATCGATCTGCTGCAGAGTTCTATGTTCCTGATCCTAATCCCAACTACATTAACAATCTCTTTGTCAACCATCCGGACAGGTTTAGGCAGTATGGACTGTGGGATAGATACACAGAGTTATATCCTGATGCAGACTTGGTTTACACGGTTGGTGTTAGTGACTATAGCAAAGACTGGTTCTTTGCTCAGGTTACCAGGAAGAAAGATGACAATAAGTATCAAGCAACAACTTGGCAGATCAAATTCAAGCTTGATGATGTAGACAAGAACGGTACCTATAAGCTGAGAGTAGCACTTGCATCTGCAACTCTTTCTGAATTACAGGTTCGAGTAAACAATCCAAAGGAAAATCCTCCTCTATTCACAAGTGGTTTGATAGGGAGGGACAATTCCATTGCAAGACATGGAATCCATGGCCTCTATTGGCTTTACAATGTCAATATACCGAGCTCTCGGCTTGTTGAGGGGGACAATACTATCTTTCTAACTCAACCAAGAAGCACTAGCCCTTTTCAAGGGATCATGTATGATTATATTCGCTTAGAAGGTCCCCCATCTGTAAGTTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

642

Amino Acids

73.34

Weight (kDa)

4.85

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	6 - 204	1.5e-97	Rhamnogalacturonate lyase family
fn3_3	PF14686	359 - 430	7.8e-28	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	445 - 633	3.5e-55	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09890 AT1G09890 AT1G09890 AT1G09890 AT1G09890
fragaria_vesca	FvH4_5g34111
malus_domestica	MD08G1205800.v1.1 MD15G1389300.v1.1
prunus_persica	Prupe.1G538300_v2.0.a1
pyrus_communis	pycom08g17790 pycom08g17800
rosa_chinensis	RchiOBHm_Chr7g0233621
rosa_laevigata	RLG00000001248
rosa_multiflora	Rmu_sc0003712.1_g000013
rosa_roxburghii	Rroxscaffold_3G00227110
rosa_rugosa	Rorug03G0282300 Rorug07G0062800 Rorug07G0281700
rosa_samantha	Rh7AG438200 Rh7BG410900 Rh7CG457800 Rh7DG427200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1209
Acc65I	GGTACC	1 cut(s)	1628
AccB1I	GGYRCC	2 cut(s)	817, 1628
AccB7I	CCANNNNNTGG	2 cut(s)	11, 550
AccI	GTMKAC	1 cut(s)	1617
AccIII	TCCGGA	2 cut(s)	803, 1429
AciI	CCGC	4 cut(s)	680, 779, 1100, 1286
AclWI	GGATC	4 cut(s)	303, 671, 1382, 1883
AcoI	YGGCCR	2 cut(s)	480, 962
AcsI	RAATTY	2 cut(s)	824, 1598
AcuI	CTGAAG	2 cut(s)	354, 1005
AfaI	GTAC	3 cut(s)	623, 657, 1630
AfeI	AGCGCT	1 cut(s)	793
AfiI	CCNNNNNNNGG	6 cut(s)	11, 539, 550, 686, 1325, 1871
AgsI	TTSAA	5 cut(s)	32, 451, 950, 1603, 1871
AhdI	GACNNNNNGTC	1 cut(s)	1114
AjnI	CCWGG	5 cut(s)	290, 549, 1102, 1228, 1550
Alw21I	GWGCWC	4 cut(s)	276, 402, 429, 1808
Alw26I	GTCTC	3 cut(s)	801, 1035, 1101
AlwI	GGATC	4 cut(s)	303, 671, 1382, 1883
AlwNI	CAGNNNCTG	1 cut(s)	983
Ama87I	CYCGRG	2 cut(s)	134, 560
Aor13HI	TCCGGA	2 cut(s)	803, 1429
Aor51HI	AGCGCT	1 cut(s)	793
AoxI	GGCC	8 cut(s)	413, 480, 541, 763, 859, 962, 1327, 1771
ApeKI	GCWGC	2 cut(s)	830, 1367
ApoI	RAATTY	2 cut(s)	824, 1598
ArsI	GACNNNNNNTTYG	2 cut(s)	1520, 1552
Asp700I	GAANNNNTTC	2 cut(s)	854, 990
Asp718I	GGTACC	1 cut(s)	1628
AspLEI	GCGC	1 cut(s)	794
AspS9I	GGNCC	8 cut(s)	172, 731, 764, 860, 1003, 1225, 1328, 1904
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	3 cut(s)	848, 1025, 1214
AvaI	CYCGRG	2 cut(s)	134, 560
AvaII	GGWCC	5 cut(s)	172, 731, 1003, 1225, 1904
AxyI	CCTNAGG	1 cut(s)	1276
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BalI	TGGCCA	2 cut(s)	482, 964
BanI	GGYRCC	2 cut(s)	817, 1628
BanII	GRGCYC	3 cut(s)	276, 429, 1808
Bbv12I	GWGCWC	4 cut(s)	276, 402, 429, 1808
BbvI	GCAGC	2 cut(s)	842, 1354
BccI	CCATC	5 cut(s)	43, 1163, 1319, 1434, 1918
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	5 cut(s)	292, 551, 1104, 1230, 1552
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	801, 1035, 1101
BfaI	CTAG	4 cut(s)	176, 438, 1320, 1860
BfmI	CTRYAG	2 cut(s)	1368, 1519
BfoI	RGCGCY	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	831, 1368
BlsI	GCNGC	2 cut(s)	832, 1369
Bme1390I	CCNGG	6 cut(s)	292, 551, 653, 1104, 1230, 1552
Bme18I	GGWCC	5 cut(s)	172, 731, 1003, 1225, 1904
BmeRI	GACNNNNNGTC	1 cut(s)	1114
BmeT110I	CYCGRG	2 cut(s)	134, 560
BmgT120I	GGNCC	8 cut(s)	172, 731, 764, 860, 1003, 1225, 1328, 1904
BmiI	GGNNCC	6 cut(s)	173, 819, 1226, 1227, 1630, 1906
BmrFI	CCNGG	6 cut(s)	292, 551, 653, 1104, 1230, 1552
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	6 cut(s)	129, 916, 989, 1359, 1474, 1664
BmuI	ACTGGG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	1542
BpuMI	CCSGG	1 cut(s)	653
Bsa29I	ATCGAT	2 cut(s)	123, 1360
BsaBI	GATNNNNATC	1 cut(s)	1392
BsaJI	CCNNGG	6 cut(s)	291, 483, 549, 561, 1228, 1768
BsaWI	WCCGGW	2 cut(s)	803, 1429
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 539, 550, 686, 1325, 1871
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	4 cut(s)	106, 173, 1204, 1535
Bse21I	CCTNAGG	1 cut(s)	1276
Bse3DI	GCAATG	1 cut(s)	1749
Bse8I	GATNNNNATC	1 cut(s)	1392
BseAI	TCCGGA	2 cut(s)	803, 1429
BseBI	CCWGG	5 cut(s)	292, 551, 1104, 1230, 1552
BseCI	ATCGAT	2 cut(s)	123, 1360
BseDI	CCNNGG	6 cut(s)	291, 483, 549, 561, 1228, 1768
BseGI	GGATG	5 cut(s)	619, 931, 1174, 1350, 1426
BseJI	GATNNNNATC	1 cut(s)	1392
BseLI	CCNNNNNNNGG	6 cut(s)	11, 539, 550, 686, 1325, 1871
BseMI	GCAATG	1 cut(s)	1749
BseMII	CTCAG	4 cut(s)	469, 1290, 1556, 1631
BseNI	ACTGG	4 cut(s)	106, 173, 1204, 1535
BseRI	GAGGAG	1 cut(s)	1701
BseXI	GCAGC	2 cut(s)	842, 1354
BseYI	CCCAGC	2 cut(s)	707, 976
BshFI	GGCC	8 cut(s)	415, 482, 543, 765, 861, 964, 1329, 1773
BshNI	GGYRCC	2 cut(s)	817, 1628
BshVI	ATCGAT	2 cut(s)	123, 1360
BsiHKAI	GWGCWC	4 cut(s)	276, 402, 429, 1808
BsiHKCI	CYCGRG	2 cut(s)	134, 560
BsiSI	CCGG	4 cut(s)	652, 683, 804, 1430
BslFI	GGGAC	5 cut(s)	185, 1211, 1754, 1838, 1890
BslI	CCNNNNNNNGG	6 cut(s)	11, 539, 550, 686, 1325, 1871
BsmAI	GTCTC	3 cut(s)	801, 1035, 1101
BsmBI	CGTCTC	3 cut(s)	801, 1035, 1101
BsmFI	GGGAC	5 cut(s)	185, 1211, 1754, 1838, 1890
BsnI	GGCC	8 cut(s)	415, 482, 543, 765, 861, 964, 1329, 1773
BsoBI	CYCGRG	2 cut(s)	134, 560
Bsp1286I	GDGCHC	4 cut(s)	276, 402, 429, 1808
Bsp13I	TCCGGA	2 cut(s)	803, 1429
Bsp19I	CCATGG	2 cut(s)	483, 1768
BspACI	CCGC	4 cut(s)	680, 779, 1100, 1286
BspANI	GGCC	8 cut(s)	415, 482, 543, 765, 861, 964, 1329, 1773
BspCNI	CTCAG	4 cut(s)	468, 1289, 1555, 1632
BspDI	ATCGAT	2 cut(s)	123, 1360
BspEI	TCCGGA	2 cut(s)	803, 1429
BspLI	GGNNCC	6 cut(s)	173, 819, 1226, 1227, 1630, 1906
BspMAI	CTGCAG	1 cut(s)	1372
BspPI	GGATC	4 cut(s)	303, 671, 1382, 1883
BspT107I	GGYRCC	2 cut(s)	817, 1628
BsrDI	GCAATG	1 cut(s)	1749
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	4 cut(s)	106, 173, 1204, 1535
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	6 cut(s)	291, 483, 549, 561, 1228, 1768
BssT1I	CCWWGG	2 cut(s)	483, 1768
Bst2UI	CCWGG	5 cut(s)	292, 551, 1104, 1230, 1552
Bst4CI	ACNGT	4 cut(s)	527, 1455, 1504, 1628
BstC8I	GCNNGC	3 cut(s)	320, 417, 962
BstDEI	CTNAG	6 cut(s)	455, 788, 1276, 1542, 1640, 1897
BstDSI	CCRYGG	2 cut(s)	483, 1768
BstEII	GGTNACC	1 cut(s)	1546
BstENI	CCTNNNNNAGG	1 cut(s)	1869
BstF5I	GGATG	5 cut(s)	619, 931, 1174, 1350, 1426
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	794
BstMAI	GTCTC	3 cut(s)	801, 1035, 1101
BstMWI	GCNNNNNNNGC	1 cut(s)	1079
BstNI	CCWGG	5 cut(s)	292, 551, 1104, 1230, 1552
BstNSI	RCATGY	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	1546
BstSCI	CCNGG	6 cut(s)	290, 549, 651, 1102, 1228, 1550
BstSFI	CTRYAG	2 cut(s)	1368, 1519
BstV1I	GCAGC	2 cut(s)	842, 1354
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	1338
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	2 cut(s)	123, 1360
Bsu36I	CCTNAGG	1 cut(s)	1276
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	8 cut(s)	415, 482, 543, 765, 861, 964, 1329, 1773
BsuTUI	ATCGAT	2 cut(s)	123, 1360
BtgI	CCRYGG	2 cut(s)	483, 1768
BtgZI	GCGATG	1 cut(s)	1071
BtsCI	GGATG	5 cut(s)	619, 931, 1174, 1350, 1426
BtsIMutI	CAGTG	2 cut(s)	99, 672
Cac8I	GCNNGC	3 cut(s)	320, 417, 962
CaiI	CAGNNNCTG	1 cut(s)	983
CfoI	GCGC	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	8 cut(s)	172, 731, 764, 860, 1003, 1225, 1328, 1904
ClaI	ATCGAT	2 cut(s)	123, 1360
Csp6I	GTAC	3 cut(s)	622, 656, 1629
CviQI	GTAC	3 cut(s)	622, 656, 1629
DdeI	CTNAG	6 cut(s)	455, 788, 1276, 1542, 1640, 1897
DriI	GACNNNNNGTC	1 cut(s)	1114
EaeI	YGGCCR	2 cut(s)	480, 962
Eam1105I	GACNNNNNGTC	1 cut(s)	1114
EciI	GGCGGA	1 cut(s)	669
Ecl136II	GAGCTC	3 cut(s)	274, 427, 1806
Eco130I	CCWWGG	2 cut(s)	483, 1768
Eco24I	GRGCYC	3 cut(s)	276, 429, 1808
Eco47I	GGWCC	5 cut(s)	172, 731, 1003, 1225, 1904
Eco47III	AGCGCT	1 cut(s)	793
Eco53kI	GAGCTC	3 cut(s)	274, 427, 1806
Eco57I	CTGAAG	2 cut(s)	354, 1005
Eco81I	CCTNAGG	1 cut(s)	1276
Eco88I	CYCGRG	2 cut(s)	134, 560
Eco91I	GGTNACC	1 cut(s)	1546
EcoICRI	GAGCTC	3 cut(s)	274, 427, 1806
EcoNI	CCTNNNNNAGG	1 cut(s)	1869
EcoO109I	RGGNCCY	3 cut(s)	172, 1225, 1904
EcoO65I	GGTNACC	1 cut(s)	1546
EcoRII	CCWGG	5 cut(s)	290, 549, 1102, 1228, 1550
EcoT14I	CCWWGG	2 cut(s)	483, 1768
EcoT22I	ATGCAT	1 cut(s)	1222
EcoT38I	GRGCYC	3 cut(s)	276, 429, 1808
ErhI	CCWWGG	2 cut(s)	483, 1768
Esp3I	CGTCTC	3 cut(s)	801, 1035, 1101
FaqI	GGGAC	5 cut(s)	185, 1211, 1754, 1838, 1890
FauI	CCCGC	1 cut(s)	1107
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	1617
Fnu4HI	GCNGC	2 cut(s)	831, 1368
FokI	GGATG	5 cut(s)	626, 938, 1181, 1337, 1413
FriOI	GRGCYC	3 cut(s)	276, 429, 1808
Fsp4HI	GCNGC	2 cut(s)	831, 1368
FspBI	CTAG	4 cut(s)	176, 438, 1320, 1860
GlaI	GCGC	1 cut(s)	793
GluI	GCNGC	2 cut(s)	831, 1368
GsaI	CCCAGC	2 cut(s)	711, 980
HaeII	RGCGCY	1 cut(s)	795
HaeIII	GGCC	8 cut(s)	415, 482, 543, 765, 861, 964, 1329, 1773
HapII	CCGG	4 cut(s)	652, 683, 804, 1430
HhaI	GCGC	1 cut(s)	794
Hin6I	GCGC	1 cut(s)	792
HinP1I	GCGC	1 cut(s)	792
HincII	GTYRAC	1 cut(s)	1423
HindII	GTYRAC	1 cut(s)	1423
HindIII	AAGCTT	2 cut(s)	1301, 1604
HinfI	GANTC	2 cut(s)	139, 1764
HpaII	CCGG	4 cut(s)	652, 683, 804, 1430
HphI	GGTGA	3 cut(s)	848, 1025, 1214
Hpy166II	GTNNAC	6 cut(s)	530, 731, 1423, 1498, 1618, 1690
Hpy188I	TCNGA	8 cut(s)	431, 458, 722, 886, 985, 1003, 1040, 1672
Hpy188III	TCNNGA	8 cut(s)	32, 86, 136, 560, 804, 1385, 1430, 1481
Hpy8I	GTNNAC	6 cut(s)	530, 731, 1423, 1498, 1618, 1690
HpyAV	CCTTC	3 cut(s)	289, 307, 1895
HpyCH4III	ACNGT	4 cut(s)	527, 1455, 1504, 1628
HpyCH4IV	ACGT	3 cut(s)	1009, 1017, 1110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1079
HpyF3I	CTNAG	6 cut(s)	455, 788, 1276, 1542, 1640, 1897
HpySE526I	ACGT	3 cut(s)	1009, 1017, 1110
HspAI	GCGC	1 cut(s)	792
KflI	GGGWCCC	1 cut(s)	1225
Kpn2I	TCCGGA	2 cut(s)	803, 1429
KpnI	GGTACC	1 cut(s)	1632
Ksp22I	TGATCA	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	842, 1354
LweI	GCATC	6 cut(s)	129, 916, 989, 1359, 1474, 1664
MaeI	CTAG	4 cut(s)	176, 438, 1320, 1860
MaeII	ACGT	3 cut(s)	1009, 1017, 1110
MaeIII	GTNAC	6 cut(s)	70, 97, 635, 1013, 1514, 1546
MboII	GAAGA	5 cut(s)	161, 360, 859, 998, 1567
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	4 cut(s)	276, 402, 429, 1808
MlsI	TGGCCA	2 cut(s)	482, 964
MluCI	AATT	8 cut(s)	441, 699, 824, 880, 1145, 1598, 1673, 1744
MluNI	TGGCCA	2 cut(s)	482, 964
MmeI	TCCRAC	1 cut(s)	981
Mox20I	TGGCCA	2 cut(s)	482, 964
Mph1103I	ATGCAT	1 cut(s)	1222
MroI	TCCGGA	2 cut(s)	803, 1429
MroXI	GAANNNNTTC	2 cut(s)	854, 990
MscI	TGGCCA	2 cut(s)	482, 964
MseI	TTAA	5 cut(s)	332, 600, 738, 1215, 1407
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	2 cut(s)	482, 964
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	4 cut(s)	652, 683, 804, 1430
MspR9I	CCNGG	6 cut(s)	292, 551, 653, 1104, 1230, 1552
MvaI	CCWGG	5 cut(s)	292, 551, 1104, 1230, 1552
MwoI	GCNNNNNNNGC	1 cut(s)	1079
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	2 cut(s)	483, 1768
NdeI	CATATG	1 cut(s)	1084
NlaIV	GGNNCC	6 cut(s)	173, 819, 1226, 1227, 1630, 1906
NmeAIII	GCCGAG	1 cut(s)	1789
NmuCI	GTSAC	5 cut(s)	70, 97, 635, 1013, 1514
NsiI	ATGCAT	1 cut(s)	1222
NspI	RCATGY	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdmI	GAANNNNTTC	2 cut(s)	854, 990
PfeI	GAWTC	2 cut(s)	139, 1764
PflFI	GACNNNGTC	1 cut(s)	76
PflMI	CCANNNNNTGG	2 cut(s)	11, 550
PkrI	GCNGC	2 cut(s)	832, 1369
PpuMI	RGGWCCY	3 cut(s)	172, 1225, 1904
PsiI	TTATAA	1 cut(s)	1209
Psp124BI	GAGCTC	3 cut(s)	276, 429, 1808
Psp5II	RGGWCCY	3 cut(s)	172, 1225, 1904
Psp6I	CCWGG	5 cut(s)	290, 549, 1102, 1228, 1550
PspEI	GGTNACC	1 cut(s)	1546
PspFI	CCCAGC	2 cut(s)	707, 976
PspGI	CCWGG	5 cut(s)	290, 549, 1102, 1228, 1550
PspN4I	GGNNCC	6 cut(s)	173, 819, 1226, 1227, 1630, 1906
PspPI	GGNCC	8 cut(s)	172, 731, 764, 860, 1003, 1225, 1328, 1904
PspPPI	RGGWCCY	3 cut(s)	172, 1225, 1904
PstI	CTGCAG	1 cut(s)	1372
PstNI	CAGNNNCTG	1 cut(s)	983
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	3 cut(s)	623, 657, 1630
RsaNI	GTAC	3 cut(s)	622, 656, 1629
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	3 cut(s)	276, 429, 1808
SaqAI	TTAA	5 cut(s)	332, 600, 738, 1215, 1407
SatI	GCNGC	2 cut(s)	831, 1368
Sau96I	GGNCC	8 cut(s)	172, 731, 764, 860, 1003, 1225, 1328, 1904
ScrFI	CCNGG	6 cut(s)	292, 551, 653, 1104, 1230, 1552
SduI	GDGCHC	4 cut(s)	276, 402, 429, 1808
SfaNI	GCATC	6 cut(s)	129, 916, 989, 1359, 1474, 1664
SfcI	CTRYAG	2 cut(s)	1368, 1519
Sfr274I	CTCGAG	1 cut(s)	134
SgrAI	CRCCGGYG	1 cut(s)	682
SinI	GGWCC	5 cut(s)	172, 731, 1003, 1225, 1904
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	8 cut(s)	441, 699, 824, 880, 1145, 1598, 1673, 1744
SsiI	CCGC	4 cut(s)	680, 779, 1100, 1286
SspI	AATATT	4 cut(s)	213, 337, 842, 890
SspMI	CTAG	4 cut(s)	176, 438, 1320, 1860
SstI	GAGCTC	3 cut(s)	276, 429, 1808
StyD4I	CCNGG	6 cut(s)	290, 549, 651, 1102, 1228, 1550
StyI	CCWWGG	2 cut(s)	483, 1768
TaaI	ACNGT	4 cut(s)	527, 1455, 1504, 1628
TaiI	ACGT	3 cut(s)	1012, 1020, 1113
TaqI	TCGA	6 cut(s)	123, 135, 361, 588, 1360, 1684
TasI	AATT	8 cut(s)	441, 699, 824, 880, 1145, 1598, 1673, 1744
TfiI	GAWTC	2 cut(s)	139, 1764
Tru1I	TTAA	5 cut(s)	332, 600, 738, 1215, 1407
Tru9I	TTAA	5 cut(s)	332, 600, 738, 1215, 1407
TscAI	CASTG	2 cut(s)	106, 679
TseFI	GTSAC	5 cut(s)	70, 97, 635, 1013, 1514
TseI	GCWGC	2 cut(s)	830, 1367
Tsp45I	GTSAC	5 cut(s)	70, 97, 635, 1013, 1514
TspDTI	ATGAA	2 cut(s)	162, 340
TspGWI	ACGGA	2 cut(s)	1059, 1210
TspRI	CASTG	2 cut(s)	106, 679
Tth111I	GACNNNGTC	1 cut(s)	76
Van91I	CCANNNNNTGG	2 cut(s)	11, 550
VpaK11BI	GGWCC	5 cut(s)	172, 731, 1003, 1225, 1904
XagI	CCTNNNNNAGG	1 cut(s)	1869
XapI	RAATTY	2 cut(s)	824, 1598
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	1617
XmnI	GAANNNNTTC	2 cut(s)	854, 990
XspI	CTAG	4 cut(s)	176, 438, 1320, 1860
Zsp2I	ATGCAT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.