Rhamnogalacturonate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09890 AT1G09890 AT1G09890 AT1G09890 AT1G09890 |
| fragaria_vesca | FvH4_5g34111 |
| malus_domestica | MD08G1205800.v1.1 MD15G1389300.v1.1 |
| prunus_persica | Prupe.1G538300_v2.0.a1 |
| pyrus_communis | pycom08g17790 pycom08g17800 |
| rosa_chinensis | RchiOBHm_Chr7g0233621 |
| rosa_laevigata | RLG00000001248 |
| rosa_multiflora | Rmu_sc0003712.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00227110 |
| rosa_rugosa | Rorug03G0282300 Rorug07G0062800 Rorug07G0281700 |
| rosa_samantha | Rh7AG438200 Rh7BG410900 Rh7CG457800 Rh7DG427200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1203 |
| Acc65I | GGTACC | 1 cut(s) | 1622 |
| AccB1I | GGYRCC | 2 cut(s) | 811, 1622 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 11, 544 |
| AccI | GTMKAC | 2 cut(s) | 1021, 1611 |
| AccIII | TCCGGA | 2 cut(s) | 797, 1423 |
| AciI | CCGC | 3 cut(s) | 773, 1017, 1094 |
| AclWI | GGATC | 5 cut(s) | 290, 303, 665, 1376, 1877 |
| AcoI | YGGCCR | 2 cut(s) | 474, 956 |
| AcsI | RAATTY | 3 cut(s) | 818, 1592, 1912 |
| AcuI | CTGAAG | 2 cut(s) | 348, 999 |
| AfaI | GTAC | 3 cut(s) | 617, 651, 1624 |
| AfeI | AGCGCT | 1 cut(s) | 787 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 11, 533, 544, 680, 1319, 1865 |
| AgeI | ACCGGT | 2 cut(s) | 676, 1193 |
| AgsI | TTSAA | 6 cut(s) | 32, 419, 445, 944, 1597, 1865 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1108 |
| AjnI | CCWGG | 5 cut(s) | 290, 543, 1096, 1222, 1544 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 280, 312 |
| AluBI | AGCT | 9 cut(s) | 274, 316, 827, 954, 966, 1297, 1600, 1633, 1800 |
| AluI | AGCT | 9 cut(s) | 274, 316, 827, 954, 966, 1297, 1600, 1633, 1800 |
| Alw21I | GWGCWC | 3 cut(s) | 276, 396, 1802 |
| Alw26I | GTCTC | 3 cut(s) | 795, 1029, 1095 |
| AlwI | GGATC | 5 cut(s) | 290, 303, 665, 1376, 1877 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 977 |
| Ama87I | CYCGRG | 2 cut(s) | 134, 554 |
| Aor13HI | TCCGGA | 2 cut(s) | 797, 1423 |
| Aor51HI | AGCGCT | 1 cut(s) | 787 |
| ApeKI | GCWGC | 2 cut(s) | 824, 1361 |
| ApoI | RAATTY | 3 cut(s) | 818, 1592, 1912 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1514, 1546 |
| AsiGI | ACCGGT | 2 cut(s) | 676, 1193 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 848, 984 |
| Asp718I | GGTACC | 1 cut(s) | 1622 |
| AspLEI | GCGC | 1 cut(s) | 788 |
| AsuC2I | CCSGG | 1 cut(s) | 647 |
| AsuHPI | GGTGA | 4 cut(s) | 842, 1019, 1208, 1304 |
| AvaI | CYCGRG | 2 cut(s) | 134, 554 |
| AvaII | GGWCC | 6 cut(s) | 172, 725, 997, 1191, 1219, 1898 |
| AxyI | CCTNAGG | 1 cut(s) | 1270 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 641, 674 |
| BalI | TGGCCA | 2 cut(s) | 476, 958 |
| BamHI | GGATCC | 1 cut(s) | 295 |
| BanI | GGYRCC | 2 cut(s) | 811, 1622 |
| BanII | GRGCYC | 2 cut(s) | 276, 1802 |
| Bbv12I | GWGCWC | 3 cut(s) | 276, 396, 1802 |
| BbvI | GCAGC | 2 cut(s) | 836, 1348 |
| BccI | CCATC | 5 cut(s) | 43, 1157, 1313, 1428, 1912 |
| BceAI | ACGGC | 2 cut(s) | 490, 545 |
| BciT130I | CCWGG | 5 cut(s) | 292, 545, 1098, 1224, 1546 |
| BciVI | GTATCC | 1 cut(s) | 561 |
| BclI | TGATCA | 1 cut(s) | 222 |
| BcnI | CCSGG | 1 cut(s) | 647 |
| BcoDI | GTCTC | 3 cut(s) | 795, 1029, 1095 |
| BfaI | CTAG | 4 cut(s) | 176, 432, 1314, 1749 |
| BfmI | CTRYAG | 2 cut(s) | 1362, 1513 |
| BfoI | RGCGCY | 1 cut(s) | 789 |
| BfuI | GTATCC | 1 cut(s) | 561 |
| BisI | GCNGC | 2 cut(s) | 825, 1362 |
| BlsI | GCNGC | 2 cut(s) | 826, 1363 |
| Bme1390I | CCNGG | 6 cut(s) | 292, 545, 647, 1098, 1224, 1546 |
| Bme18I | GGWCC | 6 cut(s) | 172, 725, 997, 1191, 1219, 1898 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1108 |
| BmeT110I | CYCGRG | 2 cut(s) | 134, 554 |
| BmiI | GGNNCC | 7 cut(s) | 173, 297, 813, 1220, 1221, 1624, 1900 |
| BmrFI | CCNGG | 6 cut(s) | 292, 545, 647, 1098, 1224, 1546 |
| BmrI | ACTGGG | 1 cut(s) | 178 |
| BmsI | GCATC | 6 cut(s) | 129, 910, 1042, 1353, 1468, 1658 |
| BmuI | ACTGGG | 1 cut(s) | 178 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1536 |
| BpuMI | CCSGG | 1 cut(s) | 647 |
| Bsa29I | ATCGAT | 2 cut(s) | 123, 1354 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1386 |
| BsaJI | CCNNGG | 6 cut(s) | 291, 477, 543, 555, 1222, 1762 |
| BsaWI | WCCGGW | 5 cut(s) | 197, 676, 797, 1193, 1423 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 11, 533, 544, 680, 1319, 1865 |
| Bse118I | RCCGGY | 2 cut(s) | 676, 1193 |
| Bse1I | ACTGG | 4 cut(s) | 106, 173, 1529, 1858 |
| Bse21I | CCTNAGG | 1 cut(s) | 1270 |
| Bse3DI | GCAATG | 1 cut(s) | 1743 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1386 |
| BseAI | TCCGGA | 2 cut(s) | 797, 1423 |
| BseBI | CCWGG | 5 cut(s) | 292, 545, 1098, 1224, 1546 |
| BseCI | ATCGAT | 2 cut(s) | 123, 1354 |
| BseDI | CCNNGG | 6 cut(s) | 291, 477, 543, 555, 1222, 1762 |
| BseGI | GGATG | 5 cut(s) | 613, 925, 1168, 1344, 1420 |
| BseJI | GATNNNNATC | 1 cut(s) | 1386 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 11, 533, 544, 680, 1319, 1865 |
| BseMI | GCAATG | 1 cut(s) | 1743 |
| BseMII | CTCAG | 4 cut(s) | 463, 1284, 1550, 1625 |
| BseNI | ACTGG | 4 cut(s) | 106, 173, 1529, 1858 |
| BseRI | GAGGAG | 1 cut(s) | 1695 |
| BseXI | GCAGC | 2 cut(s) | 836, 1348 |
| BseYI | CCCAGC | 2 cut(s) | 701, 970 |
| BshNI | GGYRCC | 2 cut(s) | 811, 1622 |
| BshTI | ACCGGT | 2 cut(s) | 676, 1193 |
| BshVI | ATCGAT | 2 cut(s) | 123, 1354 |
| BsiHKAI | GWGCWC | 3 cut(s) | 276, 396, 1802 |
| BsiHKCI | CYCGRG | 2 cut(s) | 134, 554 |
| BsiSI | CCGG | 6 cut(s) | 198, 646, 677, 798, 1194, 1424 |
| BslFI | GGGAC | 5 cut(s) | 185, 1205, 1748, 1832, 1884 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 11, 533, 544, 680, 1319, 1865 |
| BsmAI | GTCTC | 3 cut(s) | 795, 1029, 1095 |
| BsmBI | CGTCTC | 3 cut(s) | 795, 1029, 1095 |
| BsmFI | GGGAC | 5 cut(s) | 185, 1205, 1748, 1832, 1884 |
| BsoBI | CYCGRG | 2 cut(s) | 134, 554 |
| Bsp1286I | GDGCHC | 3 cut(s) | 276, 396, 1802 |
| Bsp13I | TCCGGA | 2 cut(s) | 797, 1423 |
| Bsp19I | CCATGG | 2 cut(s) | 477, 1762 |
| BspACI | CCGC | 3 cut(s) | 773, 1017, 1094 |
| BspCNI | CTCAG | 4 cut(s) | 462, 1283, 1549, 1626 |
| BspDI | ATCGAT | 2 cut(s) | 123, 1354 |
| BspEI | TCCGGA | 2 cut(s) | 797, 1423 |
| BspLI | GGNNCC | 7 cut(s) | 173, 297, 813, 1220, 1221, 1624, 1900 |
| BspMAI | CTGCAG | 1 cut(s) | 1366 |
| BspPI | GGATC | 5 cut(s) | 290, 303, 665, 1376, 1877 |
| BspT107I | GGYRCC | 2 cut(s) | 811, 1622 |
| BsrDI | GCAATG | 1 cut(s) | 1743 |
| BsrFI | RCCGGY | 2 cut(s) | 676, 1193 |
| BsrI | ACTGG | 4 cut(s) | 106, 173, 1529, 1858 |
| BssAI | RCCGGY | 2 cut(s) | 676, 1193 |
| BssECI | CCNNGG | 6 cut(s) | 291, 477, 543, 555, 1222, 1762 |
| BssT1I | CCWWGG | 2 cut(s) | 477, 1762 |
| Bst2UI | CCWGG | 5 cut(s) | 292, 545, 1098, 1224, 1546 |
| Bst4CI | ACNGT | 4 cut(s) | 521, 1449, 1498, 1622 |
| BstC8I | GCNNGC | 3 cut(s) | 314, 411, 956 |
| BstDEI | CTNAG | 6 cut(s) | 449, 782, 1270, 1536, 1634, 1891 |
| BstDSI | CCRYGG | 2 cut(s) | 477, 1762 |
| BstEII | GGTNACC | 1 cut(s) | 1540 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1863 |
| BstF5I | GGATG | 5 cut(s) | 613, 925, 1168, 1344, 1420 |
| BstH2I | RGCGCY | 1 cut(s) | 789 |
| BstHHI | GCGC | 1 cut(s) | 788 |
| BstMAI | GTCTC | 3 cut(s) | 795, 1029, 1095 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1073 |
| BstNI | CCWGG | 5 cut(s) | 292, 545, 1098, 1224, 1546 |
| BstNSI | RCATGY | 1 cut(s) | 505 |
| BstPI | GGTNACC | 1 cut(s) | 1540 |
| BstSCI | CCNGG | 6 cut(s) | 290, 543, 645, 1096, 1222, 1544 |
| BstSFI | CTRYAG | 2 cut(s) | 1362, 1513 |
| BstV1I | GCAGC | 2 cut(s) | 836, 1348 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1332 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| Bsu15I | ATCGAT | 2 cut(s) | 123, 1354 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1270 |
| BsuI | GTATCC | 1 cut(s) | 561 |
| BsuTUI | ATCGAT | 2 cut(s) | 123, 1354 |
| BtgI | CCRYGG | 2 cut(s) | 477, 1762 |
| BtgZI | GCGATG | 1 cut(s) | 1065 |
| BtsCI | GGATG | 5 cut(s) | 613, 925, 1168, 1344, 1420 |
| BtsIMutI | CAGTG | 3 cut(s) | 99, 666, 1851 |
| Cac8I | GCNNGC | 3 cut(s) | 314, 411, 956 |
| CaiI | CAGNNNCTG | 1 cut(s) | 977 |
| CfoI | GCGC | 1 cut(s) | 788 |
| Cfr10I | RCCGGY | 2 cut(s) | 676, 1193 |
| ClaI | ATCGAT | 2 cut(s) | 123, 1354 |
| CpoI | CGGWCCG | 1 cut(s) | 1191 |
| Csp6I | GTAC | 3 cut(s) | 616, 650, 1623 |
| CspAI | ACCGGT | 2 cut(s) | 676, 1193 |
| CspI | CGGWCCG | 1 cut(s) | 1191 |
| CviQI | GTAC | 3 cut(s) | 616, 650, 1623 |
| DdeI | CTNAG | 6 cut(s) | 449, 782, 1270, 1536, 1634, 1891 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1108 |
| EaeI | YGGCCR | 2 cut(s) | 474, 956 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1108 |
| Ecl136II | GAGCTC | 2 cut(s) | 274, 1800 |
| Eco130I | CCWWGG | 2 cut(s) | 477, 1762 |
| Eco24I | GRGCYC | 2 cut(s) | 276, 1802 |
| Eco47I | GGWCC | 6 cut(s) | 172, 725, 997, 1191, 1219, 1898 |
| Eco47III | AGCGCT | 1 cut(s) | 787 |
| Eco53kI | GAGCTC | 2 cut(s) | 274, 1800 |
| Eco57I | CTGAAG | 2 cut(s) | 348, 999 |
| Eco81I | CCTNAGG | 1 cut(s) | 1270 |
| Eco88I | CYCGRG | 2 cut(s) | 134, 554 |
| Eco91I | GGTNACC | 1 cut(s) | 1540 |
| EcoICRI | GAGCTC | 2 cut(s) | 274, 1800 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1863 |
| EcoO109I | RGGNCCY | 3 cut(s) | 172, 1219, 1898 |
| EcoO65I | GGTNACC | 1 cut(s) | 1540 |
| EcoRII | CCWGG | 5 cut(s) | 290, 543, 1096, 1222, 1544 |
| EcoT14I | CCWWGG | 2 cut(s) | 477, 1762 |
| EcoT22I | ATGCAT | 1 cut(s) | 1216 |
| EcoT38I | GRGCYC | 2 cut(s) | 276, 1802 |
| ErhI | CCWWGG | 2 cut(s) | 477, 1762 |
| Esp3I | CGTCTC | 3 cut(s) | 795, 1029, 1095 |
| FaqI | GGGAC | 5 cut(s) | 185, 1205, 1748, 1832, 1884 |
| FauI | CCCGC | 1 cut(s) | 1101 |
| FauNDI | CATATG | 1 cut(s) | 1078 |
| FbaI | TGATCA | 1 cut(s) | 222 |
| FblI | GTMKAC | 2 cut(s) | 1021, 1611 |
| Fnu4HI | GCNGC | 2 cut(s) | 825, 1362 |
| FokI | GGATG | 5 cut(s) | 620, 932, 1175, 1331, 1407 |
| FriOI | GRGCYC | 2 cut(s) | 276, 1802 |
| Fsp4HI | GCNGC | 2 cut(s) | 825, 1362 |
| FspBI | CTAG | 4 cut(s) | 176, 432, 1314, 1749 |
| GlaI | GCGC | 1 cut(s) | 787 |
| GluI | GCNGC | 2 cut(s) | 825, 1362 |
| GsaI | CCCAGC | 2 cut(s) | 705, 974 |
| HaeII | RGCGCY | 1 cut(s) | 789 |
| HapII | CCGG | 6 cut(s) | 198, 646, 677, 798, 1194, 1424 |
| HhaI | GCGC | 1 cut(s) | 788 |
| Hin6I | GCGC | 1 cut(s) | 786 |
| HinP1I | GCGC | 1 cut(s) | 786 |
| HincII | GTYRAC | 2 cut(s) | 1089, 1417 |
| HindII | GTYRAC | 2 cut(s) | 1089, 1417 |
| HindIII | AAGCTT | 1 cut(s) | 1598 |
| HinfI | GANTC | 2 cut(s) | 139, 1758 |
| HpaI | GTTAAC | 1 cut(s) | 1089 |
| HpaII | CCGG | 6 cut(s) | 198, 646, 677, 798, 1194, 1424 |
| HphI | GGTGA | 4 cut(s) | 842, 1019, 1208, 1304 |
| Hpy166II | GTNNAC | 8 cut(s) | 524, 725, 1022, 1089, 1417, 1492, 1612, 1684 |
| Hpy188I | TCNGA | 8 cut(s) | 425, 452, 716, 880, 979, 997, 1034, 1666 |
| Hpy188III | TCNNGA | 8 cut(s) | 32, 86, 136, 554, 798, 1379, 1424, 1475 |
| Hpy8I | GTNNAC | 8 cut(s) | 524, 725, 1022, 1089, 1417, 1492, 1612, 1684 |
| HpyAV | CCTTC | 2 cut(s) | 301, 1889 |
| HpyCH4III | ACNGT | 4 cut(s) | 521, 1449, 1498, 1622 |
| HpyCH4IV | ACGT | 3 cut(s) | 1003, 1011, 1104 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1073 |
| HpyF3I | CTNAG | 6 cut(s) | 449, 782, 1270, 1536, 1634, 1891 |
| HpySE526I | ACGT | 3 cut(s) | 1003, 1011, 1104 |
| HspAI | GCGC | 1 cut(s) | 786 |
| KflI | GGGWCCC | 1 cut(s) | 1219 |
| Kpn2I | TCCGGA | 2 cut(s) | 797, 1423 |
| KpnI | GGTACC | 1 cut(s) | 1626 |
| Ksp22I | TGATCA | 1 cut(s) | 222 |
| KspAI | GTTAAC | 1 cut(s) | 1089 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| Lsp1109I | GCAGC | 2 cut(s) | 836, 1348 |
| LweI | GCATC | 6 cut(s) | 129, 910, 1042, 1353, 1468, 1658 |
| MaeI | CTAG | 4 cut(s) | 176, 432, 1314, 1749 |
| MaeII | ACGT | 3 cut(s) | 1003, 1011, 1104 |
| MaeIII | GTNAC | 7 cut(s) | 70, 97, 629, 694, 1007, 1508, 1540 |
| MboII | GAAGA | 5 cut(s) | 161, 354, 853, 992, 1561 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MhlI | GDGCHC | 3 cut(s) | 276, 396, 1802 |
| MlsI | TGGCCA | 2 cut(s) | 476, 958 |
| MluCI | AATT | 8 cut(s) | 435, 818, 874, 1139, 1592, 1667, 1738, 1912 |
| MluNI | TGGCCA | 2 cut(s) | 476, 958 |
| MmeI | TCCRAC | 1 cut(s) | 975 |
| Mox20I | TGGCCA | 2 cut(s) | 476, 958 |
| Mph1103I | ATGCAT | 1 cut(s) | 1216 |
| MroI | TCCGGA | 2 cut(s) | 797, 1423 |
| MroXI | GAANNNNTTC | 2 cut(s) | 848, 984 |
| MscI | TGGCCA | 2 cut(s) | 476, 958 |
| MseI | TTAA | 5 cut(s) | 594, 732, 1088, 1209, 1401 |
| MslI | CAYNNNNRTG | 1 cut(s) | 476 |
| Msp20I | TGGCCA | 2 cut(s) | 476, 958 |
| MspA1I | CMGCKG | 1 cut(s) | 827 |
| MspI | CCGG | 6 cut(s) | 198, 646, 677, 798, 1194, 1424 |
| MspR9I | CCNGG | 6 cut(s) | 292, 545, 647, 1098, 1224, 1546 |
| MvaI | CCWGG | 5 cut(s) | 292, 545, 1098, 1224, 1546 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1073 |
| NciI | CCSGG | 1 cut(s) | 647 |
| NcoI | CCATGG | 2 cut(s) | 477, 1762 |
| NdeI | CATATG | 1 cut(s) | 1078 |
| NlaIV | GGNNCC | 7 cut(s) | 173, 297, 813, 1220, 1221, 1624, 1900 |
| NmeAIII | GCCGAG | 1 cut(s) | 1783 |
| NmuCI | GTSAC | 5 cut(s) | 70, 97, 629, 1007, 1508 |
| NsiI | ATGCAT | 1 cut(s) | 1216 |
| NspI | RCATGY | 1 cut(s) | 505 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 387 |
| PdmI | GAANNNNTTC | 2 cut(s) | 848, 984 |
| PfeI | GAWTC | 2 cut(s) | 139, 1758 |
| PflFI | GACNNNGTC | 1 cut(s) | 76 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 11, 544 |
| PinAI | ACCGGT | 2 cut(s) | 676, 1193 |
| PkrI | GCNGC | 2 cut(s) | 826, 1363 |
| PpuMI | RGGWCCY | 3 cut(s) | 172, 1219, 1898 |
| PsiI | TTATAA | 1 cut(s) | 1203 |
| Psp124BI | GAGCTC | 2 cut(s) | 276, 1802 |
| Psp5II | RGGWCCY | 3 cut(s) | 172, 1219, 1898 |
| Psp6I | CCWGG | 5 cut(s) | 290, 543, 1096, 1222, 1544 |
| PspEI | GGTNACC | 1 cut(s) | 1540 |
| PspFI | CCCAGC | 2 cut(s) | 701, 970 |
| PspGI | CCWGG | 5 cut(s) | 290, 543, 1096, 1222, 1544 |
| PspN4I | GGNNCC | 7 cut(s) | 173, 297, 813, 1220, 1221, 1624, 1900 |
| PspPPI | RGGWCCY | 3 cut(s) | 172, 1219, 1898 |
| PstI | CTGCAG | 1 cut(s) | 1366 |
| PstNI | CAGNNNCTG | 1 cut(s) | 977 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| PsyI | GACNNNGTC | 1 cut(s) | 76 |
| PvuII | CAGCTG | 1 cut(s) | 827 |
| RsaI | GTAC | 3 cut(s) | 617, 651, 1624 |
| RsaNI | GTAC | 3 cut(s) | 616, 650, 1623 |
| RseI | CAYNNNNRTG | 1 cut(s) | 476 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1191 |
| RsrII | CGGWCCG | 1 cut(s) | 1191 |
| SacI | GAGCTC | 2 cut(s) | 276, 1802 |
| SaqAI | TTAA | 5 cut(s) | 594, 732, 1088, 1209, 1401 |
| SatI | GCNGC | 2 cut(s) | 825, 1362 |
| ScrFI | CCNGG | 6 cut(s) | 292, 545, 647, 1098, 1224, 1546 |
| SduI | GDGCHC | 3 cut(s) | 276, 396, 1802 |
| SfaNI | GCATC | 6 cut(s) | 129, 910, 1042, 1353, 1468, 1658 |
| SfcI | CTRYAG | 2 cut(s) | 1362, 1513 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| SgrAI | CRCCGGYG | 1 cut(s) | 676 |
| SinI | GGWCC | 6 cut(s) | 172, 725, 997, 1191, 1219, 1898 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 476 |
| SmlI | CTYRAG | 1 cut(s) | 134 |
| SmoI | CTYRAG | 1 cut(s) | 134 |
| Sse9I | AATT | 8 cut(s) | 435, 818, 874, 1139, 1592, 1667, 1738, 1912 |
| SsiI | CCGC | 3 cut(s) | 773, 1017, 1094 |
| SspI | AATATT | 3 cut(s) | 213, 331, 836 |
| SspMI | CTAG | 4 cut(s) | 176, 432, 1314, 1749 |
| SstI | GAGCTC | 2 cut(s) | 276, 1802 |
| StyD4I | CCNGG | 6 cut(s) | 290, 543, 645, 1096, 1222, 1544 |
| StyI | CCWWGG | 2 cut(s) | 477, 1762 |
| TaaI | ACNGT | 4 cut(s) | 521, 1449, 1498, 1622 |
| TaiI | ACGT | 3 cut(s) | 1006, 1014, 1107 |
| TaqI | TCGA | 6 cut(s) | 123, 135, 355, 582, 1354, 1678 |
| TasI | AATT | 8 cut(s) | 435, 818, 874, 1139, 1592, 1667, 1738, 1912 |
| TfiI | GAWTC | 2 cut(s) | 139, 1758 |
| Tru1I | TTAA | 5 cut(s) | 594, 732, 1088, 1209, 1401 |
| Tru9I | TTAA | 5 cut(s) | 594, 732, 1088, 1209, 1401 |
| TscAI | CASTG | 3 cut(s) | 106, 673, 1858 |
| TseFI | GTSAC | 5 cut(s) | 70, 97, 629, 1007, 1508 |
| TseI | GCWGC | 2 cut(s) | 824, 1361 |
| Tsp45I | GTSAC | 5 cut(s) | 70, 97, 629, 1007, 1508 |
| TspDTI | ATGAA | 3 cut(s) | 162, 334, 892 |
| TspGWI | ACGGA | 2 cut(s) | 1053, 1204 |
| TspRI | CASTG | 3 cut(s) | 106, 673, 1858 |
| Tth111I | GACNNNGTC | 1 cut(s) | 76 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 11, 544 |
| VpaK11BI | GGWCC | 6 cut(s) | 172, 725, 997, 1191, 1219, 1898 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1863 |
| XapI | RAATTY | 3 cut(s) | 818, 1592, 1912 |
| XceI | RCATGY | 1 cut(s) | 505 |
| XhoI | CTCGAG | 1 cut(s) | 134 |
| XmiI | GTMKAC | 2 cut(s) | 1021, 1611 |
| XmnI | GAANNNNTTC | 2 cut(s) | 848, 984 |
| XspI | CTAG | 4 cut(s) | 176, 432, 1314, 1749 |
| Zsp2I | ATGCAT | 1 cut(s) | 1216 |