Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003581

Physical Location & Seq

Genomic Coordinates Reverse (-)

53651165 .. 53655331

Gene Structure 4167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1436500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGCTCTCTCTGGACTACTTCTTCCCATTTCATCAATCATCATCTTCATCTTCCTTGCATACAAACTCTACCAACGGCTCAGGTTCAAGCTCCCGCCAGGTCCACGTCCATGGCCCGTCGTCGGAAACCTCTACCAGATAACGCCGGTGAGGTTCCGCTGCTACAACGAGTGGGCTCAGAAATACGGACCCATCATTTCAGTGTGGATTGGATCAACACTGAGCGTCGTAGTGAACAACACAGAGCTTGCAAAGGAAGTGCTCAAGGAGAATGACCAGAAACTGGCTGACAGGCACAGGAACAGATCAACCGCAAAGCTCAGCAGGGACGGCCAGGATCTTATTTGGGCTGACTATGGGCCCCACTATGTTAAGGTGAGGAAGGTGTGCACTCTTGAGCTTTTCTCTGCAAAGAGGCTCGAGGATCTGAGACCCATTAGAGAAGATGAGGTCACTGCTATGGTGGAGTCCGTCTTCAACCACTGCACCAAGCCTGAAAACAATGGAAAAAGTTTGACAGTGAGGAAGTATTTGGGAACCGTGGCTTTCAACAACATAACAAGGCTAGCATTTGGGAAACGTTTCATCAACTCAGATGAAATCACAGATGAGCAAGGCAAAGAATTCAGAGCTCTTATTGCCGATGGAGTGAAGAAGAGCGGATCGCTCTCTGTGGCTGAGCACATTTCGTGGTTGCGTTGGGCATGCCCGTTTGACGAAGAGGCGTTTGCTCGACATGAGGCGAACAGAGACAAACTCACCAAGGAAATCATGGACGAACACACTCAGGCACGCTCCAGAGGTGGCGTTGCCAAGAGCCATTTCGTGGATGCATTGTTTACCTTGAAGGACAAGTATGACCTTAGTATGGACACTATTATAGGACTTCTTTGGGATATGATGGCTGCCGGTACAGACACCACAGCTATTACAGCTGAATGGGGCATGGCCGAACTGATTAAGAACCCAAGGGTGCAACAAAAGGCTCAAGAGGAGCTAGATAAGGTTATTGGGGTCGACCGGGTCTTGACCGAAAACGATTTCTCAAACCTCCCTTACCTACAATGTGTTGCAAAGGAAGCACTACGTTTGCACCCACCAGCACCACTAATGCTCCCCCACCGAGCCAATGCCGATGTCAAGATTGGTGGCTACGACGTCCCCAAGGGTTCGATCGTTCATGTCAATATTTGGGCTATAGCACGTGACCCGGCTGTCTGGAAAAGCCCAAATGCATTTCGTCCTGAAAGGTTCCTGGAAGAAGACTTTGACATCAAAGGCCATGACTTCAGACTACTTCCATTTGGATCAGGCAGGCGAGTATGCCCTGGAGCCCAACTCGGTATCAACTTGGTGGCCTCCATGTTGGGTCATCTGTTGCACCATTTCAGTTGGGCTCCGCCCCAAGGAGTGAACCCAGAGGAGATTGACATGTCCGAAAATCCAGGGACGGTCACTTACATGGCAACCCCAGTAGAAGTTGTGCCTACTCCAAGGCTGCCATCACACTTGTACAAGCGTGTGGAGGCGACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005886 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009808 GO:0009809 GO:0009812 GO:0009813 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046409 GO:0046483 GO:0055114 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

513

Amino Acids

57.9

Weight (kDa)

8.36

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 480	8.3e-105	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40890
fragaria_vesca	FvH4_1g29330 FvH4_5g15140
malus_domestica	MD08G1242900.v1.1 MD08G1243000.v1.1 MD14G1198300.v1.1 MD15G1436500.v1.1
prunus_persica	Prupe.1G580200_v2.0.a1 Prupe.1G580300_v2.0.a1 Prupe.1G580400_v2.0.a1 Prupe.1G580500_v2.0.a1 Prupe.5G191300_v2.0.a1
pyrus_communis	pycom08g21050 pycom08g21070 pycom15g38520 pycom15g38530
rosa_chinensis	RchiOBHm_Chr3g0494961 RchiOBHm_Chr7g0181041
rosa_laevigata	RLG00000005217 RLG00000022658
rosa_multiflora	Rmu_sc0003482.1_g000016 Rmu_sc0007079.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272320 Rroxscaffold_6G00390880
rosa_rugosa	Rorug03G0268400 Rorug06G0438600
rosa_samantha	Rh3AG318000 Rh3BG352800 Rh3DG352100 Rh7AG040000 Rh7BG039400 Rh7CG041100 Rh7DG039600
rosa_wichuraiana	Rw3G027700 Rw7G003290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1214
AatII	GACGTC	1 cut(s)	1161
AccB7I	CCANNNNNTGG	2 cut(s)	283, 826
AccBSI	CCGCTC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	1017
AciI	CCGC	5 cut(s)	95, 157, 312, 660, 1400
AclI	AACGTT	1 cut(s)	580
AclWI	GGATC	5 cut(s)	220, 345, 432, 670, 1315
AcoI	YGGCCR	2 cut(s)	331, 948
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	1273
AcvI	CACGTG	1 cut(s)	1205
AcyI	GRCGYC	1 cut(s)	1158
AfaI	GTAC	2 cut(s)	913, 1514
AfiI	CCNNNNNNNGG	5 cut(s)	122, 283, 826, 868, 1406
AflIII	ACRYGT	1 cut(s)	1431
AgsI	TTSAA	4 cut(s)	88, 478, 550, 847
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	5 cut(s)	97, 333, 1254, 1327, 1444
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AluBI	AGCT	8 cut(s)	91, 247, 319, 400, 632, 926, 935, 997
AluI	AGCT	8 cut(s)	91, 247, 319, 400, 632, 926, 935, 997
Alw21I	GWGCWC	4 cut(s)	264, 392, 634, 684
Alw26I	GTCTC	2 cut(s)	424, 744
Alw44I	GTGCAC	1 cut(s)	388
AlwI	GGATC	5 cut(s)	220, 345, 432, 670, 1315
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	6 cut(s)	113, 331, 359, 948, 1279, 1356
ApaI	GGGCCC	1 cut(s)	363
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	159, 905, 1498
ApoI	RAATTY	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	581
AspS9I	GGNCC	5 cut(s)	101, 114, 188, 359, 360
AsuC2I	CCSGG	2 cut(s)	1022, 1211
AsuHPI	GGTGA	3 cut(s)	160, 388, 751
AsuNHI	GCTAGC	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	2 cut(s)	101, 188
BaeGI	GKGCMC	2 cut(s)	363, 392
BanII	GRGCYC	5 cut(s)	178, 363, 634, 1336, 1399
BbrPI	CACGTG	1 cut(s)	1205
BbsI	GAAGAC	2 cut(s)	466, 1269
Bbv12I	GWGCWC	4 cut(s)	264, 392, 634, 684
BbvI	GCAGC	3 cut(s)	146, 892, 1485
BccI	CCATC	4 cut(s)	200, 638, 895, 1510
BceAI	ACGGC	2 cut(s)	92, 346
BciT130I	CCWGG	5 cut(s)	99, 335, 1256, 1329, 1446
BcnI	CCSGG	2 cut(s)	1022, 1211
BcoDI	GTCTC	2 cut(s)	424, 744
BfaI	CTAG	2 cut(s)	566, 998
BfmI	CTRYAG	1 cut(s)	1197
BisI	GCNGC	3 cut(s)	160, 906, 1499
BlpI	GCTNAGC	2 cut(s)	320, 678
BlsI	GCNGC	3 cut(s)	161, 907, 1500
Bme1390I	CCNGG	7 cut(s)	99, 335, 1022, 1211, 1256, 1329, 1446
Bme18I	GGWCC	2 cut(s)	101, 188
BmeT110I	CYCGRG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	5 cut(s)	101, 114, 188, 359, 360
BmiI	GGNNCC	8 cut(s)	155, 190, 361, 362, 538, 1253, 1333, 1398
BmrFI	CCNGG	7 cut(s)	99, 335, 1022, 1211, 1256, 1329, 1446
BmrI	ACTGGG	1 cut(s)	1466
BmsI	GCATC	1 cut(s)	820
BmtI	GCTAGC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	1466
BpiI	GAAGAC	2 cut(s)	466, 1269
BplI	GAGNNNNNCTC	6 cut(s)	389, 421, 741, 773, 1323, 1355
BpmI	CTGGAG	2 cut(s)	781, 1350
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu1102I	GCTNAGC	2 cut(s)	320, 678
BpuEI	CTTGAG	3 cut(s)	248, 416, 972
BpuMI	CCSGG	2 cut(s)	1022, 1211
BsaAI	YACGTR	1 cut(s)	1205
BsaHI	GRCGYC	1 cut(s)	1158
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	9 cut(s)	110, 540, 762, 968, 1164, 1327, 1405, 1445, 1493
BsaXI	ACNNNNNCTCC	2 cut(s)	1098, 1128
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 283, 826, 868, 1406
Bse118I	RCCGGY	2 cut(s)	145, 908
Bse1I	ACTGG	2 cut(s)	288, 1472
BseBI	CCWGG	5 cut(s)	99, 335, 1256, 1329, 1446
BseDI	CCNNGG	9 cut(s)	110, 540, 762, 968, 1164, 1327, 1405, 1445, 1493
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	5 cut(s)	122, 283, 826, 868, 1406
BseMII	CTCAG	8 cut(s)	94, 191, 212, 334, 419, 606, 669, 800
BseNI	ACTGG	2 cut(s)	288, 1472
BseRI	GAGGAG	2 cut(s)	1007, 1436
BseSI	GKGCMC	2 cut(s)	363, 392
BseXI	GCAGC	3 cut(s)	146, 892, 1485
BsgI	GTGCAG	1 cut(s)	469
Bsh1285I	CGRYCG	2 cut(s)	1021, 1176
BshFI	GGCC	6 cut(s)	115, 333, 361, 950, 1281, 1358
BsiEI	CGRYCG	2 cut(s)	1021, 1176
BsiHKAI	GWGCWC	4 cut(s)	264, 392, 634, 684
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	4 cut(s)	146, 909, 1021, 1211
BslFI	GGGAC	3 cut(s)	341, 1145, 1462
BslI	CCNNNNNNNGG	5 cut(s)	122, 283, 826, 868, 1406
BsmAI	GTCTC	2 cut(s)	424, 744
BsmFI	GGGAC	3 cut(s)	341, 1145, 1462
BsnI	GGCC	6 cut(s)	115, 333, 361, 950, 1281, 1358
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	419
Bsp120I	GGGCCC	1 cut(s)	359
Bsp1286I	GDGCHC	8 cut(s)	178, 264, 363, 392, 634, 684, 1336, 1399
Bsp1407I	TGTACA	1 cut(s)	1512
Bsp143I	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
Bsp1720I	GCTNAGC	2 cut(s)	320, 678
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	95, 157, 312, 660, 1400
BspANI	GGCC	6 cut(s)	115, 333, 361, 950, 1281, 1358
BspCNI	CTCAG	8 cut(s)	93, 190, 213, 333, 420, 605, 670, 799
BspLI	GGNNCC	8 cut(s)	155, 190, 361, 362, 538, 1253, 1333, 1398
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	5 cut(s)	220, 345, 432, 670, 1315
BspQI	GCTCTTC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	145, 908
BsrGI	TGTACA	1 cut(s)	1512
BsrI	ACTGG	2 cut(s)	288, 1472
BssAI	RCCGGY	2 cut(s)	145, 908
BssECI	CCNNGG	9 cut(s)	110, 540, 762, 968, 1164, 1327, 1405, 1445, 1493
BssMI	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
BssNI	GRCGYC	1 cut(s)	1158
BssT1I	CCWWGG	6 cut(s)	110, 762, 968, 1164, 1405, 1493
Bst2UI	CCWGG	5 cut(s)	99, 335, 1256, 1329, 1446
Bst4CI	ACNGT	3 cut(s)	520, 541, 1453
Bst6I	CTCTTC	2 cut(s)	650, 714
BstACI	GRCGYC	1 cut(s)	1158
BstAUI	TGTACA	1 cut(s)	1512
BstBAI	YACGTR	1 cut(s)	1205
BstC8I	GCNNGC	5 cut(s)	249, 567, 706, 793, 1316
BstDEI	CTNAG	9 cut(s)	80, 177, 221, 320, 428, 592, 678, 786, 863
BstDSI	CCRYGG	2 cut(s)	110, 540
BstF5I	GGATG	1 cut(s)	835
BstKTI	GATC	7 cut(s)	215, 308, 340, 427, 665, 1176, 1310
BstMAI	GTCTC	2 cut(s)	424, 744
BstMBI	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
BstMCI	CGRYCG	2 cut(s)	1021, 1176
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 638, 932, 1079
BstNI	CCWGG	5 cut(s)	99, 335, 1256, 1329, 1446
BstNSI	RCATGY	2 cut(s)	708, 1435
BstSCI	CCNGG	7 cut(s)	97, 333, 1020, 1209, 1254, 1327, 1444
BstSFI	CTRYAG	1 cut(s)	1197
BstSLI	GKGCMC	2 cut(s)	363, 392
BstV1I	GCAGC	3 cut(s)	146, 892, 1485
BstV2I	GAAGAC	2 cut(s)	466, 1269
BstX2I	RGATCY	2 cut(s)	337, 424
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	337, 424
BsuRI	GGCC	6 cut(s)	115, 333, 361, 950, 1281, 1358
BtgI	CCRYGG	2 cut(s)	110, 540
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	2 cut(s)	453, 481
BtsIMutI	CAGTG	5 cut(s)	207, 218, 453, 481, 525
Cac8I	GCNNGC	5 cut(s)	249, 567, 706, 793, 1316
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr10I	RCCGGY	2 cut(s)	145, 908
Cfr13I	GGNCC	5 cut(s)	101, 114, 188, 359, 360
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	912, 1513
CspCI	CAANNNNNGTGG	2 cut(s)	1129, 1164
CviQI	GTAC	2 cut(s)	912, 1513
DdeI	CTNAG	9 cut(s)	80, 177, 221, 320, 428, 592, 678, 786, 863
DpnI	GATC	7 cut(s)	214, 307, 339, 426, 664, 1175, 1309
DpnII	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
DrdI	GACNNNNNNGTC	1 cut(s)	1214
DseDI	GACNNNNNNGTC	1 cut(s)	1214
EaeI	YGGCCR	2 cut(s)	331, 948
Eam1104I	CTCTTC	2 cut(s)	650, 714
EarI	CTCTTC	2 cut(s)	650, 714
EciI	GGCGGA	1 cut(s)	1389
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	6 cut(s)	110, 762, 968, 1164, 1405, 1493
Eco24I	GRGCYC	5 cut(s)	178, 363, 634, 1336, 1399
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	101, 188
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	1273
Eco72I	CACGTG	1 cut(s)	1205
Eco88I	CYCGRG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	5 cut(s)	97, 333, 1254, 1327, 1444
EcoT14I	CCWWGG	6 cut(s)	110, 762, 968, 1164, 1405, 1493
EcoT22I	ATGCAT	2 cut(s)	835, 1237
EcoT38I	GRGCYC	5 cut(s)	178, 363, 634, 1336, 1399
ErhI	CCWWGG	6 cut(s)	110, 762, 968, 1164, 1405, 1493
FaqI	GGGAC	3 cut(s)	341, 1145, 1462
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	1017
Fnu4HI	GCNGC	3 cut(s)	160, 906, 1499
FokI	GGATG	1 cut(s)	842
FriOI	GRGCYC	5 cut(s)	178, 363, 634, 1336, 1399
Fsp4HI	GCNGC	3 cut(s)	160, 906, 1499
FspBI	CTAG	2 cut(s)	566, 998
GluI	GCNGC	3 cut(s)	160, 906, 1499
GsuI	CTGGAG	2 cut(s)	781, 1350
HaeIII	GGCC	6 cut(s)	115, 333, 361, 950, 1281, 1358
HapII	CCGG	4 cut(s)	146, 909, 1021, 1211
HgaI	GACGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	1158
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	4 cut(s)	146, 909, 1021, 1211
HphI	GGTGA	3 cut(s)	160, 388, 751
Hpy166II	GTNNAC	6 cut(s)	104, 235, 390, 840, 1018, 1414
Hpy188I	TCNGA	7 cut(s)	125, 180, 429, 595, 629, 1292, 1438
Hpy188III	TCNNGA	8 cut(s)	12, 395, 798, 989, 1027, 1141, 1219, 1244
Hpy8I	GTNNAC	6 cut(s)	104, 235, 390, 840, 1018, 1414
Hpy99I	CGWCG	4 cut(s)	122, 125, 230, 1160
HpyAV	CCTTC	2 cut(s)	376, 841
HpyCH4III	ACNGT	3 cut(s)	520, 541, 1453
HpyCH4IV	ACGT	5 cut(s)	106, 580, 1087, 1158, 1204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 638, 932, 1079
HpyF3I	CTNAG	9 cut(s)	80, 177, 221, 320, 428, 592, 678, 786, 863
HpySE526I	ACGT	5 cut(s)	106, 580, 1087, 1158, 1204
Hsp92I	GRCGYC	1 cut(s)	1158
Kzo9I	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	6 cut(s)	96, 800, 994, 1119, 1331, 1402
Lsp1109I	GCAGC	3 cut(s)	146, 892, 1485
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	2 cut(s)	566, 998
MaeII	ACGT	5 cut(s)	106, 580, 1087, 1158, 1204
MaeIII	GTNAC	3 cut(s)	451, 1205, 1453
MalI	GATC	7 cut(s)	214, 307, 339, 426, 664, 1175, 1309
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
MflI	RGATCY	2 cut(s)	337, 424
MhlI	GDGCHC	8 cut(s)	178, 264, 363, 392, 634, 684, 1336, 1399
MluCI	AATT	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	103
Mph1103I	ATGCAT	2 cut(s)	835, 1237
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	2 cut(s)	372, 960
MslI	CAYNNNNRTG	4 cut(s)	109, 200, 458, 1460
MspA1I	CMGCKG	2 cut(s)	159, 935
MspI	CCGG	4 cut(s)	146, 909, 1021, 1211
MspR9I	CCNGG	7 cut(s)	99, 335, 1022, 1211, 1256, 1329, 1446
MvaI	CCWGG	5 cut(s)	99, 335, 1256, 1329, 1446
MwoI	GCNNNNNNNGC	4 cut(s)	330, 638, 932, 1079
NciI	CCSGG	2 cut(s)	1022, 1211
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
NheI	GCTAGC	1 cut(s)	565
NlaIV	GGNNCC	8 cut(s)	155, 190, 361, 362, 538, 1253, 1333, 1398
NmuCI	GTSAC	3 cut(s)	451, 1205, 1453
NsiI	ATGCAT	2 cut(s)	835, 1237
NspI	RCATGY	2 cut(s)	708, 1435
PaeI	GCATGC	1 cut(s)	708
PaeR7I	CTCGAG	1 cut(s)	419
PciI	ACATGT	1 cut(s)	1431
PciSI	GCTCTTC	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	581
PflFI	GACNNNGTC	1 cut(s)	1022
PflMI	CCANNNNNTGG	2 cut(s)	283, 826
PfoI	TCCNGGA	1 cut(s)	1254
PkrI	GCNGC	3 cut(s)	161, 907, 1500
Ple19I	CGATCG	1 cut(s)	1176
PleI	GAGTC	1 cut(s)	475
PmaCI	CACGTG	1 cut(s)	1205
PmlI	CACGTG	1 cut(s)	1205
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	1205
PscI	ACATGT	1 cut(s)	1431
Psp124BI	GAGCTC	1 cut(s)	634
Psp1406I	AACGTT	1 cut(s)	580
Psp6I	CCWGG	5 cut(s)	97, 333, 1254, 1327, 1444
PspCI	CACGTG	1 cut(s)	1205
PspGI	CCWGG	5 cut(s)	97, 333, 1254, 1327, 1444
PspN4I	GGNNCC	8 cut(s)	155, 190, 361, 362, 538, 1253, 1333, 1398
PspOMI	GGGCCC	1 cut(s)	359
PspPI	GGNCC	5 cut(s)	101, 114, 188, 359, 360
PspXI	VCTCGAGB	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	337, 424
PsyI	GACNNNGTC	1 cut(s)	1022
PvuI	CGATCG	1 cut(s)	1176
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	2 cut(s)	913, 1514
RsaNI	GTAC	2 cut(s)	912, 1513
RseI	CAYNNNNRTG	4 cut(s)	109, 200, 458, 1460
SacI	GAGCTC	1 cut(s)	634
SalI	GTCGAC	1 cut(s)	1016
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	2 cut(s)	372, 960
SatI	GCNGC	3 cut(s)	160, 906, 1499
Sau3AI	GATC	7 cut(s)	212, 305, 337, 424, 662, 1173, 1307
Sau96I	GGNCC	5 cut(s)	101, 114, 188, 359, 360
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	7 cut(s)	99, 335, 1022, 1211, 1256, 1329, 1446
SduI	GDGCHC	8 cut(s)	178, 264, 363, 392, 634, 684, 1336, 1399
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	1197
Sfr274I	CTCGAG	1 cut(s)	419
SgrAI	CRCCGGYG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	101, 188
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	4 cut(s)	109, 200, 458, 1460
SmlI	CTYRAG	4 cut(s)	263, 395, 419, 987
SmoI	CTYRAG	4 cut(s)	263, 395, 419, 987
SphI	GCATGC	1 cut(s)	708
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	5 cut(s)	95, 157, 312, 660, 1400
SspI	AATATT	1 cut(s)	1189
SspMI	CTAG	2 cut(s)	566, 998
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	7 cut(s)	97, 333, 1020, 1209, 1254, 1327, 1444
StyI	CCWWGG	6 cut(s)	110, 762, 968, 1164, 1405, 1493
TaaI	ACNGT	3 cut(s)	520, 541, 1453
TaiI	ACGT	5 cut(s)	109, 583, 1090, 1161, 1207
TaqI	TCGA	4 cut(s)	420, 733, 1017, 1172
TaqII	GACCGA	1 cut(s)	1046
TasI	AATT	1 cut(s)	623
TatI	WGTACW	1 cut(s)	1512
Tru1I	TTAA	2 cut(s)	372, 960
Tru9I	TTAA	2 cut(s)	372, 960
TscAI	CASTG	5 cut(s)	207, 225, 460, 488, 525
TseFI	GTSAC	3 cut(s)	451, 1205, 1453
TseI	GCWGC	3 cut(s)	159, 905, 1498
Tsp45I	GTSAC	3 cut(s)	451, 1205, 1453
TspDTI	ATGAA	5 cut(s)	21, 37, 574, 612, 1169
TspGWI	ACGGA	2 cut(s)	201, 460
TspRI	CASTG	5 cut(s)	207, 225, 460, 488, 525
Tth111I	GACNNNGTC	1 cut(s)	1022
Van91I	CCANNNNNTGG	2 cut(s)	283, 826
VneI	GTGCAC	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	101, 188
XapI	RAATTY	1 cut(s)	623
XceI	RCATGY	2 cut(s)	708, 1435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	1017
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	2 cut(s)	566, 998
ZraI	GACGTC	1 cut(s)	1159
Zsp2I	ATGCAT	2 cut(s)	835, 1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.