Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003581

Physical Location & Seq

Genomic Coordinates Forward (+)

2927339 .. 2928815

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTCTTGTTCTGTTGCCCATGTCAATGATTTTCATATTCCTTGCTTACAAACTTTATAACAAGCTGAGGTTCAAGCTTCCCCCAGGGCCATACCCATTGCCGATCATTGGAAACCTTTGCGCCATGGGTGCGGTTAAATCTCGGTGTTTTTTTGAGTGGTCACAAGTTTATGGTCCAATCATGTCTGTGTGGTTTGGTTCAAATTTGCACATAGTAGTCTCAAACCCAGAGTTGGCAAAGCAAGTGCTCAAAGACAATGATGAGCAATTAGCAAATAGGTACAAGAATTGGACACATTCTAGACTCAGCAGAAATGGCAAGGGTCTTATATGGGCTGATTATGGTCCTCACTACTCAAAGCTTAGGAAGGTTTGTGTGCTCGAGCTTTTCTCTACCAAGAGCCTTGAGACTTATAGACACATTAGGGAAGATGAAGTTAGAGCCATGGTCAAGTCAATTTTCAAAGATTGCACTAATCCTTGTGACTATGGAAGAGGTTTAGTGGTCAAAAAGTATGTGGGAGCTGTGGCATTCAACAACATCACACGGCTACTGTTCGGACAGCGGTTCGGGAATGAAGATGGTGTGCTAAACAAGCTAGGGGCGGAGTTTGTGGCAAGTCTGTCTAAAAAAGCAGAGCGTGGGGCATTTTTTGCTATTGTTCAAGAGATTTGGTGGCTTAGATGGGTTTTGTGGCCTCAACGTATAGGACTTGCTAAAATTTTGGCAGACGAAGACCAACTGAAACGAGCAATCATGGAGGAGCATATGCAAGGTAGCCAAGGTCAGGGCGAGAAGAAACATTTTCTGGCTGCATTGCTAAGTCTTCAAGAGAAACATGATCTCACCCAGGATAATATTGGAGCATTACTTTGGGGAATGGTCAGTGCTGGCATGGATACAATTGCAATATCAGCTGAATGGGCCATGGCAGAGTTGATCAAGAACCCGACGGTGCAATGGAAGGCGCAAGAGGAGCTTGACCGCTCCCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006576 GO:0006595 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008216 GO:0009058 GO:0009308 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0034641 GO:0044106 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:0072532 GO:0072533 GO:0072547 GO:0072548 GO:0072549 GO:0072550 GO:0072551 GO:0072552 GO:0097164 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

333

Amino Acids

38.0

Weight (kDa)

9.13

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 331	2.5e-45	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40890
fragaria_vesca	FvH4_1g29330 FvH4_5g15140
malus_domestica	MD08G1242900.v1.1 MD08G1243000.v1.1 MD14G1198300.v1.1 MD15G1436500.v1.1
prunus_persica	Prupe.1G580200_v2.0.a1 Prupe.1G580300_v2.0.a1 Prupe.1G580400_v2.0.a1 Prupe.1G580500_v2.0.a1 Prupe.5G191300_v2.0.a1
pyrus_communis	pycom08g21050 pycom08g21070 pycom15g38520 pycom15g38530
rosa_chinensis	RchiOBHm_Chr3g0494961 RchiOBHm_Chr7g0181041
rosa_laevigata	RLG00000005217 RLG00000022658
rosa_multiflora	Rmu_sc0003482.1_g000016 Rmu_sc0007079.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272320 Rroxscaffold_6G00390880
rosa_rugosa	Rorug03G0268400 Rorug06G0438600
rosa_samantha	Rh3AG318000 Rh3BG352800 Rh3DG352100 Rh7AG040000 Rh7BG039400 Rh7CG041100 Rh7DG039600
rosa_wichuraiana	Rw3G027700 Rw7G003290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	990
AciI	CCGC	4 cut(s)	134, 568, 608, 988
AcsI	RAATTY	2 cut(s)	205, 723
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	110, 235, 790
AgsI	TTSAA	6 cut(s)	76, 204, 466, 538, 668, 833
AjnI	CCWGG	2 cut(s)	85, 852
AluBI	AGCT	8 cut(s)	67, 79, 364, 388, 527, 601, 920, 982
AluI	AGCT	8 cut(s)	67, 79, 364, 388, 527, 601, 920, 982
Alw21I	GWGCWC	2 cut(s)	252, 384
Alw26I	GTCTC	2 cut(s)	226, 404
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	89, 698, 927
ApeKI	GCWGC	1 cut(s)	815
ApoI	RAATTY	2 cut(s)	205, 723
AspLEI	GCGC	2 cut(s)	125, 973
AspS9I	GGNCC	4 cut(s)	89, 176, 347, 927
AsuHPI	GGTGA	1 cut(s)	841
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	176, 347
BbsI	GAAGAC	2 cut(s)	744, 821
Bbv12I	GWGCWC	2 cut(s)	252, 384
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	802
BccI	CCATC	2 cut(s)	578, 681
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	87, 854
BciVI	GTATCC	1 cut(s)	895
BclI	TGATCA	1 cut(s)	942
BcoDI	GTCTC	2 cut(s)	226, 404
BfaI	CTAG	2 cut(s)	303, 602
BfuI	GTATCC	1 cut(s)	895
BisI	GCNGC	1 cut(s)	816
BlsI	GCNGC	1 cut(s)	817
Bme1390I	CCNGG	2 cut(s)	87, 854
Bme18I	GGWCC	2 cut(s)	176, 347
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	4 cut(s)	89, 176, 347, 927
BmrFI	CCNGG	2 cut(s)	87, 854
BpiI	GAAGAC	2 cut(s)	744, 821
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bpu10I	CCTNAGC	2 cut(s)	68, 365
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	7 cut(s)	85, 86, 126, 447, 784, 852, 930
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 235, 790
Bse3DI	GCAATG	3 cut(s)	98, 818, 968
BseBI	CCWGG	2 cut(s)	87, 854
BseDI	CCNNGG	7 cut(s)	85, 86, 126, 447, 784, 852, 930
BseLI	CCNNNNNNNGG	3 cut(s)	110, 235, 790
BseMI	GCAATG	3 cut(s)	98, 818, 968
BseMII	CTCAG	2 cut(s)	59, 322
BseRI	GAGGAG	2 cut(s)	779, 992
BseXI	GCAGC	1 cut(s)	802
BshFI	GGCC	3 cut(s)	91, 700, 929
BsiHKAI	GWGCWC	2 cut(s)	252, 384
BsiHKCI	CYCGRG	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	110, 235, 790
BsmAI	GTCTC	2 cut(s)	226, 404
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	91, 700, 929
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	252, 384
Bsp143I	GATC	3 cut(s)	105, 844, 942
Bsp19I	CCATGG	3 cut(s)	126, 447, 930
BspACI	CCGC	4 cut(s)	134, 568, 608, 988
BspANI	GGCC	3 cut(s)	91, 700, 929
BspCNI	CTCAG	2 cut(s)	60, 321
BsrBI	CCGCTC	1 cut(s)	990
BsrDI	GCAATG	3 cut(s)	98, 818, 968
BssECI	CCNNGG	7 cut(s)	85, 86, 126, 447, 784, 852, 930
BssMI	GATC	3 cut(s)	105, 844, 942
BssT1I	CCWWGG	4 cut(s)	126, 447, 784, 930
Bst2UI	CCWGG	2 cut(s)	87, 854
Bst4CI	ACNGT	2 cut(s)	558, 958
Bst6I	CTCTTC	1 cut(s)	490
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	895
BstDEI	CTNAG	5 cut(s)	68, 308, 365, 683, 824
BstDSI	CCRYGG	3 cut(s)	126, 447, 930
BstHHI	GCGC	2 cut(s)	125, 973
BstKTI	GATC	3 cut(s)	108, 847, 945
BstMAI	GTCTC	2 cut(s)	226, 404
BstMBI	GATC	3 cut(s)	105, 844, 942
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 318, 598, 656, 917, 926, 979
BstNI	CCWGG	2 cut(s)	87, 854
BstSCI	CCNGG	2 cut(s)	85, 852
BstV1I	GCAGC	1 cut(s)	802
BstV2I	GAAGAC	2 cut(s)	744, 821
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	3 cut(s)	91, 700, 929
BtgI	CCRYGG	3 cut(s)	126, 447, 930
BtsIMutI	CAGTG	1 cut(s)	895
Cac8I	GCNNGC	1 cut(s)	895
CfoI	GCGC	2 cut(s)	125, 973
Cfr13I	GGNCC	4 cut(s)	89, 176, 347, 927
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	8 cut(s)	22, 127, 184, 448, 760, 842, 898, 931
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	5 cut(s)	68, 308, 365, 683, 824
DpnI	GATC	3 cut(s)	107, 846, 944
DpnII	GATC	3 cut(s)	105, 844, 942
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	623
Eco130I	CCWWGG	4 cut(s)	126, 447, 784, 930
Eco47I	GGWCC	2 cut(s)	176, 347
Eco88I	CYCGRG	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	85, 852
EcoT14I	CCWWGG	4 cut(s)	126, 447, 784, 930
ErhI	CCWWGG	4 cut(s)	126, 447, 784, 930
FaeI	CATG	8 cut(s)	25, 130, 187, 451, 763, 845, 901, 934
FalI	AAGNNNNNCTT	2 cut(s)	966, 998
FatI	CATG	8 cut(s)	21, 126, 183, 447, 759, 841, 897, 930
FauNDI	CATATG	1 cut(s)	771
FbaI	TGATCA	1 cut(s)	942
Fnu4HI	GCNGC	1 cut(s)	816
Fsp4HI	GCNGC	1 cut(s)	816
FspBI	CTAG	2 cut(s)	303, 602
GlaI	GCGC	2 cut(s)	124, 972
GluI	GCNGC	1 cut(s)	816
HaeIII	GGCC	3 cut(s)	91, 700, 929
HhaI	GCGC	2 cut(s)	125, 973
Hin1II	CATG	8 cut(s)	25, 130, 187, 451, 763, 845, 901, 934
Hin6I	GCGC	2 cut(s)	123, 971
HinP1I	GCGC	2 cut(s)	123, 971
HindIII	AAGCTT	2 cut(s)	77, 362
HinfI	GANTC	1 cut(s)	306
HphI	GGTGA	1 cut(s)	841
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	5 cut(s)	303, 574, 668, 833, 946
Hpy99I	CGWCG	1 cut(s)	958
HpyAV	CCTTC	2 cut(s)	364, 961
HpyCH4III	ACNGT	2 cut(s)	558, 958
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	6 cut(s)	211, 474, 775, 818, 911, 961
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 318, 598, 656, 917, 926, 979
HpyF3I	CTNAG	5 cut(s)	68, 308, 365, 683, 824
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	8 cut(s)	25, 130, 187, 451, 763, 845, 901, 934
HspAI	GCGC	2 cut(s)	123, 971
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	3 cut(s)	105, 844, 942
LmnI	GCTCC	5 cut(s)	524, 766, 866, 979, 995
LpnPI	CCDG	8 cut(s)	72, 99, 243, 776, 797, 839, 866, 879
Lsp1109I	GCAGC	1 cut(s)	802
MaeI	CTAG	2 cut(s)	303, 602
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	162, 485
MalI	GATC	3 cut(s)	107, 846, 944
MbiI	CCGCTC	1 cut(s)	990
MboI	GATC	3 cut(s)	105, 844, 942
MboII	GAAGA	6 cut(s)	443, 507, 593, 749, 811, 821
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	2 cut(s)	252, 384
MluCI	AATT	6 cut(s)	205, 269, 289, 459, 723, 906
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	63, 360, 491, 711, 757, 970
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	26, 188
MspA1I	CMGCKG	2 cut(s)	568, 920
MspR9I	CCNGG	2 cut(s)	87, 854
MunI	CAATTG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	2 cut(s)	87, 854
MwoI	GCNNNNNNNGC	7 cut(s)	131, 318, 598, 656, 917, 926, 979
NcoI	CCATGG	3 cut(s)	126, 447, 930
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	3 cut(s)	105, 844, 942
NlaIII	CATG	8 cut(s)	25, 130, 187, 451, 763, 845, 901, 934
NmuCI	GTSAC	2 cut(s)	162, 485
PaeR7I	CTCGAG	1 cut(s)	383
PasI	CCCWGGG	1 cut(s)	86
PctI	GAATGC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	817
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	85, 852
PspGI	CCWGG	2 cut(s)	85, 852
PspPI	GGNCC	4 cut(s)	89, 176, 347, 927
PspXI	VCTCGAGB	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	26, 188
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	816
Sau3AI	GATC	3 cut(s)	105, 844, 942
Sau96I	GGNCC	4 cut(s)	89, 176, 347, 927
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	87, 854
SduI	GDGCHC	2 cut(s)	252, 384
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	176, 347
SlaI	CTCGAG	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	26, 188
SmlI	CTYRAG	2 cut(s)	383, 407
SmoI	CTYRAG	2 cut(s)	383, 407
Sse9I	AATT	6 cut(s)	205, 269, 289, 459, 723, 906
SsiI	CCGC	4 cut(s)	134, 568, 608, 988
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	2 cut(s)	303, 602
StyD4I	CCNGG	2 cut(s)	85, 852
StyI	CCWWGG	4 cut(s)	126, 447, 784, 930
TaaI	ACNGT	2 cut(s)	558, 958
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	384, 996
TasI	AATT	6 cut(s)	205, 269, 289, 459, 723, 906
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	2 cut(s)	162, 485
TseI	GCWGC	1 cut(s)	815
Tsp45I	GTSAC	2 cut(s)	162, 485
TspDTI	ATGAA	3 cut(s)	25, 450, 594
TspRI	CASTG	1 cut(s)	895
VpaK11BI	GGWCC	2 cut(s)	176, 347
XapI	RAATTY	2 cut(s)	205, 723
XbaI	TCTAGA	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	383
XspI	CTAG	2 cut(s)	303, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.