Rroxscaffold_3G00272320

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
64460204 .. 64461706
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272320.1

Sequence Viewer

Length: 1503 bp
ATGGCTCTTGTTCTGTTGCCCATGTCAATGCTTTTCATATTCCTTGCTTACAAACTTTATAACAAGCTGAGGTTCAAGCTTCCCCCAGGGCCATACCCATTGCCGATCATTGGAAACCTTTGCGCCATGGGTGCGGTTAAATCTCGGTGTTTTTTTGAGTGGTCACAAGTTTATGGTCCAATCATGTCTGTGTGGTTTGGTTCAAATTTGCACATAGTAGTCTCAAACCCAGAGTTGGCAAAGCAAGTGCTCAAAGACAATGATGAGCAATTAGCAGATAGGCACAAGAATTGGACACATTCTAGACTCAGCAGAAATGGCAAGGGTCTTATATGGGCTGATTATGGTCCTCACTACTCAAAGCTTAGGAAAGTTTGTGTGCTCGAGCTTTTCTCTACGAAGAGCCTTGAGACTTATAGACACATTAGGGAAGATGAAGTTAGAGCCATGGTCAAGTCAATTTTCAAAGATTGCACTAGTCCTTGTGACTATGGAAGAGGTTTAGTGGTCAAAAAGTATGTGGGAGCTGTGGCATTCAACAACATCACACGGCTACTGTTCGGACAGCGGTTCAGGAATGAAGATGGTGTGCTAAACAAGCTAGGGGCGCAGTTTGTGGCAAGTCTGTCTAAAAAAGCAGAGCGTGGGGCATTTTTTGCTATTGTTCAAGAGATTTGGTGGCTTAGATGGGTTTTGTGGCCTCAACGTATAGGACTTGCTAAAATTTTGGCAGACGAAGACCAACTCAAACGAGCAATCCTGGAGGAGCATATGCAAGGTAGCCAAGGTCAGGGCGAGAAGAAACATTTTCTGGGTGCATTGCTAAGTCTTCAAGAGAAATATGATCTCACCCAGGATAATATTGGAGCATTACTTTGGGGAATGGTCAGTGCTGGCATGGATACAATTGCAATATCAGCTGAATGGGCCATGGCAGAGTTGATCAAGAACCCGACGGTGCAATGGAAGGCGCAAGAGGAGCTTGACCGCGTAATAGGGCTGGACCGGCCAGTGACAGAGGCGGATATTTCAAACCTTCCATACCTAAAATGTGTAGCCAAAGAGGCACTGAGGCTTCACCCTCCAACCCCATTAATGCTACCTCACAGAGCCAATGCCAATGTCAATATTGGTGGCTACGACATTCCCTTAGGAACTGCTGTTCATGTAAACGTTTGGGCCATTGGGCGTGATCCGAAGGTGTGGCAAGACCCATACAGATTCCGACCCGAGAGATTCATCGAGACAAAGGAGCATGGTTTTGGCTTTTTGCCATTTGGTGCAGGAAGGCGTATGTGCCCAGCAGCACAAGTAGGCACCACCTTGGTCACACTAATGTTGGCTCACCTTTTGCATAGCTTTGCTTGGAGCTCGCCCGAAGGGCTCCAGCCAAAGGAGATCGACATGTCAGAGAGCCCGGGATTGGTATGCTATATGAAGACCCCTTTGATAGCAGTCCCTCGATTGAGATTGCCTGAGCACTTGTACAAGCATATGCTTTGA

Protein Analysis

500

Amino Acids

56.76

Weight (kDa)

9.24

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 476 1.8e-96 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 1316
AccII CGCG 1 cut(s) 990
AciI CCGC 4 cut(s) 134, 568, 988, 1022
AclI AACGTT 1 cut(s) 1173
AclWI GGATC 1 cut(s) 1187
AcoI YGGCCR 1 cut(s) 1007
AcsI RAATTY 2 cut(s) 205, 723
AfaI GTAC 1 cut(s) 1487
AfiI CCNNNNNNNGG 5 cut(s) 110, 235, 790, 1393, 1423
AflIII ACRYGT 1 cut(s) 1404
AgsI TTSAA 7 cut(s) 76, 204, 466, 538, 668, 833, 1032
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 3 cut(s) 85, 759, 852
AloI GAACNNNNNNTCC 2 cut(s) 1146, 1178
Alw21I GWGCWC 4 cut(s) 252, 384, 1373, 1482
Alw26I GTCTC 3 cut(s) 226, 404, 1238
AlwI GGATC 1 cut(s) 1187
Ama87I CYCGRG 3 cut(s) 383, 1229, 1417
AoxI GGCC 5 cut(s) 89, 698, 927, 1007, 1179
ApeKI GCWGC 1 cut(s) 1304
ApoI RAATTY 2 cut(s) 205, 723
AseI ATTAAT 1 cut(s) 1094
AspLEI GCGC 3 cut(s) 125, 610, 973
AspS9I GGNCC 6 cut(s) 89, 176, 347, 927, 1003, 1179
AsuC2I CCSGG 2 cut(s) 1418, 1419
AsuHPI GGTGA 3 cut(s) 841, 1070, 1337
AvaI CYCGRG 3 cut(s) 383, 1229, 1417
AvaII GGWCC 3 cut(s) 176, 347, 1003
AxyI CCTNAGG 1 cut(s) 1150
BaeGI GKGCMC 1 cut(s) 1301
BanI GGYRCC 1 cut(s) 1316
BanII GRGCYC 3 cut(s) 1373, 1386, 1418
BbsI GAAGAC 3 cut(s) 744, 821, 1445
Bbv12I GWGCWC 4 cut(s) 252, 384, 1373, 1482
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 1316
BccI CCATC 2 cut(s) 578, 681
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 3 cut(s) 87, 761, 854
BciVI GTATCC 1 cut(s) 895
BclI TGATCA 1 cut(s) 942
BcnI CCSGG 2 cut(s) 1418, 1419
BcoDI GTCTC 3 cut(s) 226, 404, 1238
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 303, 477, 602
BfuI GTATCC 1 cut(s) 895
BglI GCCNNNNNGGC 2 cut(s) 1064, 1381
BisI GCNGC 1 cut(s) 1305
BlsI GCNGC 1 cut(s) 1306
Bme1390I CCNGG 5 cut(s) 87, 761, 854, 1418, 1419
Bme18I GGWCC 3 cut(s) 176, 347, 1003
BmeT110I CYCGRG 3 cut(s) 383, 1229, 1417
BmgT120I GGNCC 6 cut(s) 89, 176, 347, 927, 1003, 1179
BmiI GGNNCC 2 cut(s) 1318, 1385
BmrFI CCNGG 5 cut(s) 87, 761, 854, 1418, 1419
BpiI GAAGAC 3 cut(s) 744, 821, 1445
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 2 cut(s) 782, 1370
Bpu10I CCTNAGC 3 cut(s) 68, 365, 1476
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 1418, 1419
BsaJI CCNNGG 9 cut(s) 85, 86, 126, 447, 784, 852, 930, 1323, 1417
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 235, 790, 1393, 1423
Bse118I RCCGGY 1 cut(s) 1005
Bse1I ACTGG 1 cut(s) 1010
Bse21I CCTNAGG 1 cut(s) 1150
Bse3DI GCAATG 3 cut(s) 98, 818, 968
BseBI CCWGG 3 cut(s) 87, 761, 854
BseDI CCNNGG 9 cut(s) 85, 86, 126, 447, 784, 852, 930, 1323, 1417
BseLI CCNNNNNNNGG 5 cut(s) 110, 235, 790, 1393, 1423
BseMI GCAATG 3 cut(s) 98, 818, 968
BseMII CTCAG 4 cut(s) 59, 322, 1061, 1467
BseNI ACTGG 1 cut(s) 1010
BseRI GAGGAG 2 cut(s) 779, 992
BseSI GKGCMC 1 cut(s) 1301
BseXI GCAGC 1 cut(s) 1316
BseYI CCCAGC 1 cut(s) 1300
BsgI GTGCAG 1 cut(s) 1302
Bsh1236I CGCG 1 cut(s) 990
BshFI GGCC 5 cut(s) 91, 700, 929, 1009, 1181
BshNI GGYRCC 1 cut(s) 1316
BsiHKAI GWGCWC 4 cut(s) 252, 384, 1373, 1482
BsiHKCI CYCGRG 3 cut(s) 383, 1229, 1417
BsiSI CCGG 2 cut(s) 1006, 1418
BslFI GGGAC 1 cut(s) 1442
BslI CCNNNNNNNGG 5 cut(s) 110, 235, 790, 1393, 1423
BsmAI GTCTC 3 cut(s) 226, 404, 1238
BsmFI GGGAC 1 cut(s) 1442
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 5 cut(s) 91, 700, 929, 1009, 1181
BsoBI CYCGRG 3 cut(s) 383, 1229, 1417
Bsp1286I GDGCHC 7 cut(s) 252, 384, 1301, 1373, 1386, 1418, 1482
Bsp1407I TGTACA 1 cut(s) 1485
Bsp143I GATC 5 cut(s) 105, 844, 942, 1192, 1398
Bsp19I CCATGG 3 cut(s) 126, 447, 930
BspACI CCGC 4 cut(s) 134, 568, 988, 1022
BspANI GGCC 5 cut(s) 91, 700, 929, 1009, 1181
BspCNI CTCAG 4 cut(s) 60, 321, 1062, 1468
BspFNI CGCG 1 cut(s) 990
BspLI GGNNCC 2 cut(s) 1318, 1385
BspPI GGATC 1 cut(s) 1187
BspQI GCTCTTC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 1316
BsrDI GCAATG 3 cut(s) 98, 818, 968
BsrFI RCCGGY 1 cut(s) 1005
BsrGI TGTACA 1 cut(s) 1485
BsrI ACTGG 1 cut(s) 1010
BssAI RCCGGY 1 cut(s) 1005
BssECI CCNNGG 9 cut(s) 85, 86, 126, 447, 784, 852, 930, 1323, 1417
BssMI GATC 5 cut(s) 105, 844, 942, 1192, 1398
BssT1I CCWWGG 5 cut(s) 126, 447, 784, 930, 1323
Bst2UI CCWGG 3 cut(s) 87, 761, 854
Bst4CI ACNGT 2 cut(s) 558, 958
Bst6I CTCTTC 2 cut(s) 395, 490
BstAPI GCANNNNNTGC 1 cut(s) 656
BstAUI TGTACA 1 cut(s) 1485
BstC8I GCNNGC 2 cut(s) 895, 1373
BstDEI CTNAG 8 cut(s) 68, 308, 365, 683, 824, 1070, 1150, 1476
BstDSI CCRYGG 3 cut(s) 126, 447, 930
BstFNI CGCG 1 cut(s) 990
BstHHI GCGC 3 cut(s) 125, 610, 973
BstKTI GATC 5 cut(s) 108, 847, 945, 1195, 1401
BstMAI GTCTC 3 cut(s) 226, 404, 1238
BstMBI GATC 5 cut(s) 105, 844, 942, 1192, 1398
BstNI CCWGG 3 cut(s) 87, 761, 854
BstNSI RCATGY 1 cut(s) 1408
BstSCI CCNGG 5 cut(s) 85, 759, 852, 1416, 1417
BstSLI GKGCMC 1 cut(s) 1301
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 1 cut(s) 1316
BstV2I GAAGAC 3 cut(s) 744, 821, 1445
Bsu36I CCTNAGG 1 cut(s) 1150
BsuI GTATCC 1 cut(s) 895
BsuRI GGCC 5 cut(s) 91, 700, 929, 1009, 1181
BtgI CCRYGG 3 cut(s) 126, 447, 930
BtsIMutI CAGTG 3 cut(s) 895, 1017, 1067
Cac8I GCNNGC 2 cut(s) 895, 1373
CfoI GCGC 3 cut(s) 125, 610, 973
Cfr10I RCCGGY 1 cut(s) 1005
Cfr13I GGNCC 6 cut(s) 89, 176, 347, 927, 1003, 1179
Cfr9I CCCGGG 1 cut(s) 1417
Csp6I GTAC 1 cut(s) 1486
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviAII CATG 9 cut(s) 22, 127, 184, 448, 898, 931, 1166, 1256, 1405
CviQI GTAC 1 cut(s) 1486
DdeI CTNAG 8 cut(s) 68, 308, 365, 683, 824, 1070, 1150, 1476
DpnI GATC 5 cut(s) 107, 846, 944, 1194, 1400
DpnII GATC 5 cut(s) 105, 844, 942, 1192, 1398
EaeI YGGCCR 1 cut(s) 1007
Eam1104I CTCTTC 2 cut(s) 395, 490
EarI CTCTTC 2 cut(s) 395, 490
EciI GGCGGA 1 cut(s) 1037
Ecl136II GAGCTC 1 cut(s) 1371
Eco130I CCWWGG 5 cut(s) 126, 447, 784, 930, 1323
Eco24I GRGCYC 3 cut(s) 1373, 1386, 1418
Eco47I GGWCC 3 cut(s) 176, 347, 1003
Eco53kI GAGCTC 1 cut(s) 1371
Eco81I CCTNAGG 1 cut(s) 1150
Eco88I CYCGRG 3 cut(s) 383, 1229, 1417
EcoICRI GAGCTC 1 cut(s) 1371
EcoRII CCWGG 3 cut(s) 85, 759, 852
EcoT14I CCWWGG 5 cut(s) 126, 447, 784, 930, 1323
EcoT38I GRGCYC 3 cut(s) 1373, 1386, 1418
ErhI CCWWGG 5 cut(s) 126, 447, 784, 930, 1323
FaeI CATG 9 cut(s) 25, 130, 187, 451, 901, 934, 1169, 1259, 1408
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FaqI GGGAC 1 cut(s) 1442
FatI CATG 9 cut(s) 21, 126, 183, 447, 897, 930, 1165, 1255, 1404
FauNDI CATATG 2 cut(s) 771, 1494
FbaI TGATCA 1 cut(s) 942
Fnu4HI GCNGC 1 cut(s) 1305
FriOI GRGCYC 3 cut(s) 1373, 1386, 1418
Fsp4HI GCNGC 1 cut(s) 1305
FspBI CTAG 3 cut(s) 303, 477, 602
GlaI GCGC 3 cut(s) 124, 609, 972
GluI GCNGC 1 cut(s) 1305
GsaI CCCAGC 1 cut(s) 1304
GsuI CTGGAG 2 cut(s) 782, 1370
HaeIII GGCC 5 cut(s) 91, 700, 929, 1009, 1181
HapII CCGG 2 cut(s) 1006, 1418
HhaI GCGC 3 cut(s) 125, 610, 973
Hin1II CATG 9 cut(s) 25, 130, 187, 451, 901, 934, 1169, 1259, 1408
Hin6I GCGC 3 cut(s) 123, 608, 971
HinP1I GCGC 3 cut(s) 123, 608, 971
HindIII AAGCTT 2 cut(s) 77, 362
HinfI GANTC 3 cut(s) 306, 1221, 1236
HpaII CCGG 2 cut(s) 1006, 1418
HphI GGTGA 3 cut(s) 841, 1070, 1337
Hpy166II GTNNAC 1 cut(s) 1171
Hpy188I TCNGA 4 cut(s) 563, 1197, 1226, 1411
Hpy188III TCNNGA 6 cut(s) 303, 574, 668, 833, 946, 1243
Hpy8I GTNNAC 1 cut(s) 1171
Hpy99I CGWCG 1 cut(s) 958
HpyAV CCTTC 5 cut(s) 961, 1046, 1192, 1281, 1373
HpyCH4III ACNGT 2 cut(s) 558, 958
HpyCH4IV ACGT 2 cut(s) 706, 1173
HpyCH4V TGCA 8 cut(s) 211, 474, 775, 818, 911, 961, 1283, 1354
HpyF3I CTNAG 8 cut(s) 68, 308, 365, 683, 824, 1070, 1150, 1476
HpySE526I ACGT 2 cut(s) 706, 1173
Hsp92II CATG 9 cut(s) 25, 130, 187, 451, 901, 934, 1169, 1259, 1408
HspAI GCGC 3 cut(s) 123, 608, 971
Ksp22I TGATCA 1 cut(s) 942
Kzo9I GATC 5 cut(s) 105, 844, 942, 1192, 1398
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 7 cut(s) 524, 766, 866, 979, 1252, 1368, 1389
Lsp1109I GCAGC 1 cut(s) 1316
MaeI CTAG 3 cut(s) 303, 477, 602
MaeII ACGT 2 cut(s) 706, 1173
MaeIII GTNAC 4 cut(s) 162, 485, 1012, 1327
MalI GATC 5 cut(s) 107, 846, 944, 1194, 1400
MboI GATC 5 cut(s) 105, 844, 942, 1192, 1398
MboII GAAGA 8 cut(s) 412, 443, 507, 593, 749, 811, 821, 1450
MfeI CAATTG 1 cut(s) 906
MhlI GDGCHC 7 cut(s) 252, 384, 1301, 1373, 1386, 1418, 1482
MluCI AATT 6 cut(s) 205, 269, 289, 459, 723, 906
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 2 cut(s) 1109, 1249
MseI TTAA 2 cut(s) 138, 1094
MslI CAYNNNNRTG 3 cut(s) 26, 188, 1334
MspA1I CMGCKG 2 cut(s) 568, 920
MspI CCGG 2 cut(s) 1006, 1418
MspR9I CCNGG 5 cut(s) 87, 761, 854, 1418, 1419
MunI CAATTG 1 cut(s) 906
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 3 cut(s) 87, 761, 854
MvnI CGCG 1 cut(s) 990
NciI CCSGG 2 cut(s) 1418, 1419
NcoI CCATGG 3 cut(s) 126, 447, 930
NdeI CATATG 2 cut(s) 771, 1494
NdeII GATC 5 cut(s) 105, 844, 942, 1192, 1398
NlaIII CATG 9 cut(s) 25, 130, 187, 451, 901, 934, 1169, 1259, 1408
NlaIV GGNNCC 2 cut(s) 1318, 1385
NmuCI GTSAC 4 cut(s) 162, 485, 1012, 1327
NspI RCATGY 1 cut(s) 1408
PaeR7I CTCGAG 1 cut(s) 383
PasI CCCWGGG 1 cut(s) 86
PciI ACATGT 1 cut(s) 1404
PciSI GCTCTTC 1 cut(s) 395
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 1221, 1236
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 1 cut(s) 1306
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 1 cut(s) 1404
PshBI ATTAAT 1 cut(s) 1094
PsiI TTATAA 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 1373
Psp1406I AACGTT 1 cut(s) 1173
Psp6I CCWGG 3 cut(s) 85, 759, 852
PspFI CCCAGC 1 cut(s) 1300
PspGI CCWGG 3 cut(s) 85, 759, 852
PspN4I GGNNCC 2 cut(s) 1318, 1385
PspPI GGNCC 6 cut(s) 89, 176, 347, 927, 1003, 1179
PspXI VCTCGAGB 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 1487
RsaNI GTAC 1 cut(s) 1486
RseI CAYNNNNRTG 3 cut(s) 26, 188, 1334
SacI GAGCTC 1 cut(s) 1373
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 2 cut(s) 138, 1094
SatI GCNGC 1 cut(s) 1305
Sau3AI GATC 5 cut(s) 105, 844, 942, 1192, 1398
Sau96I GGNCC 6 cut(s) 89, 176, 347, 927, 1003, 1179
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 5 cut(s) 87, 761, 854, 1418, 1419
SduI GDGCHC 7 cut(s) 252, 384, 1301, 1373, 1386, 1418, 1482
Sfr274I CTCGAG 1 cut(s) 383
SinI GGWCC 3 cut(s) 176, 347, 1003
SlaI CTCGAG 1 cut(s) 383
SmaI CCCGGG 1 cut(s) 1419
SmiMI CAYNNNNRTG 3 cut(s) 26, 188, 1334
SmlI CTYRAG 2 cut(s) 383, 407
SmoI CTYRAG 2 cut(s) 383, 407
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 6 cut(s) 205, 269, 289, 459, 723, 906
SsiI CCGC 4 cut(s) 134, 568, 988, 1022
SspI AATATT 2 cut(s) 862, 1129
SspMI CTAG 3 cut(s) 303, 477, 602
SstI GAGCTC 1 cut(s) 1373
StyD4I CCNGG 5 cut(s) 85, 759, 852, 1416, 1417
StyI CCWWGG 5 cut(s) 126, 447, 784, 930, 1323
TaaI ACNGT 2 cut(s) 558, 958
TaiI ACGT 2 cut(s) 709, 1176
TaqI TCGA 4 cut(s) 384, 1242, 1401, 1462
TasI AATT 6 cut(s) 205, 269, 289, 459, 723, 906
TatI WGTACW 1 cut(s) 1485
TfiI GAWTC 2 cut(s) 1221, 1236
Tru1I TTAA 2 cut(s) 138, 1094
Tru9I TTAA 2 cut(s) 138, 1094
TscAI CASTG 3 cut(s) 895, 1017, 1074
TseFI GTSAC 4 cut(s) 162, 485, 1012, 1327
TseI GCWGC 1 cut(s) 1304
Tsp45I GTSAC 4 cut(s) 162, 485, 1012, 1327
TspDTI ATGAA 6 cut(s) 25, 450, 594, 1154, 1228, 1451
TspMI CCCGGG 1 cut(s) 1417
TspRI CASTG 3 cut(s) 895, 1017, 1074
VpaK11BI GGWCC 3 cut(s) 176, 347, 1003
VspI ATTAAT 1 cut(s) 1094
XapI RAATTY 2 cut(s) 205, 723
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 1408
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XhoI CTCGAG 1 cut(s) 383
XmaI CCCGGG 1 cut(s) 1417
XspI CTAG 3 cut(s) 303, 477, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.