Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

57209425 .. 57216938

Gene Structure 7514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0438600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

ATGGCAAATCAGTACTCAAATGAAGGCTCTGGTCCCAGCAATGTTTCTGAGGAGACCTCTGATTCAACTGTTGAGATCAATATCAAGACTTTAGAGTCGCAGATATACAGTTTTCAAGTGGAAAAAAATATGCTAGTGTCATTGTTCAAAGAAAAAATAGCTGACCAAACAGGCGTCCCAGTTGGTCAGCAGCGGTTGATTTTCAGGGGAAAGGTGCTCAAGGATGATCATCCCCTTTCCGAGTATCATTTGGAAAATGGGCATACATTGCACTTAGTTGTGAGGCAGCCATCCCAGCCACAAACTTCATCTGGTACTAGTTCTGCTGAGCCTAACGCTAATGCTGGAAATGAGGGTAATGGGGCTCCTCGTGGTCGCATAGGGCAGATTTCACACAGTGTAGTTCTTGGGACCTTCAATGTTGGAGATCAAGGTGAAGGCATGGCCCCAGATCTTAGTCGGGTCATTGGCGCAGTTTTGAATTCTATTGGAATTGGCAACCAAGCTACAACTAATGTTAATGGCAACATACAGTCTACTATGCCAAATAATCCTGGTCAGTCTCCTCAAGGAAATGAAACAGAAGGGTTGCATGGTAATGCAAATAGTCAGACTCGAGGAGGAAATAATGCACAGTCTGGACTGACATTTTCTTCTCAGCCATTTCAAACTTTGCCTCAATTTCTGCAAACTCCCCTTGCTGCTGGAGCATCTCCCTTTCCTTCACTAAATACGCCAATTCCGGACGCTTTGAACACTCTCTCTGAGTTTATGAACCTCATGGAGCGGGCATTATCACAAAATGGAGGCTACCAACAAAATATATCAGCAACAAACCCAGGAGACCTACCAAGGGTGAACTTACCTTCCAATGCTCAGGGGTTGCCCACGCCTGAAGCCTTGGGCATTGTTCTTCGCAATGCAGAACGACTTCTCAGCAGTCATGCTGCTTCTGCACTATCTCACATTGCAGGGCGCTTGGAACAAGAGGGAGCATCTTCTGATCCCTCTGCAAGGGGCCAAATTCAGACAGAATCTATTCAAGTAGGGCTTGCAATGCAACATCTAGGTGCTCTTCTTCTTGAGCTGGGCCGGACAATTTGGACACTTCGCATGGGACAATCTCCTGGAGAAGCTGTTGTTAATGCTGGGCCAGCAGTTTATATTTCCCCGTCAGGGCCTAATCCCATAATGGTGCAGCCTATTCCTTATCAAACAAGCTCCCCTTTTAGTGCTTCTGTACCCCTGTCGAATCCTATGAATTTTGGTCCTGTTGGCATTGGAAGTGCTCCAAGGAATGTAAACATTCATATACATGCTGGTACCTCACTTTCTGCACTTGGTGCTAGGGGAAGTAATGGGGAAGGGATGCAGGGAGAGCATCGTAATGGACCTGGGTCAAGGGATTCAGGTGCAGCTCGAGTGCTGCCAGTGAGAAATATTATTGCTACTGCTATCCCATCATCCCAAACTGGTATTGCAACTTCCAGTGCATCACAGCCTGGTTCAGGTGTATCTGTTCCACGGCCGCGTTCAGACTCTTCTCTTTCGTCCATCGTTGCTGAACTTAATTCACAGATTAGAAACTTTGTCGGTAATGCTCAAGGAAATGATGCAGTTCAATCAGGTCAAGCGGTGCCCAATGTTCAGAATTCATCTGCTGGAATTGGATCACGTAATAATTCAGGGAATGAGCAGCTCAGTAATTCAGATGTGAACGGAGGTCAGCAATCTAATGCGTCGCTACCTGGTTCCACATCTGAAAGTGAAGTTCAGAAGGCTTCAGGAAGTGTACCTCCCTTGAGAGATGATTCAGGATTCCAAACCAGAGATTCTCTTTCAAGTGGACAAAATCCAATGCCATCTGAAGATGACAAAGGAAATGCTTCACAAACTGCTGCAAAACAGGATAAGACCGAGGGCGCAAAAGCTGTTCCACTTGGATTAGGACTTGGAATGTTGGAACGTAAGAGACAAGGCAGGCAGCTAAAGACTCTTCAGAAGAATGGTGATGGTGGAACAACCAGCACTTCCTCCAATCAGAATCAGCAAGTAACAAGTGGCCAACAACTTTTGCAGTCTCTTGCAACTCGTAATACTGCTGGAAGTAGGTTGAGCACAAGTGATACTCCTGCAGGGCAAACAGTCCCCAATGTTGGGCAGGTTAGAGATGGTAGATCATTGGGAGGGCAAGGTCCTGGTGGCCAAGTTGATATGGGAAGTGTGATGTCTCAGGTCCTGCAGAGTCCTGCCTTAAATGGTCTGTTGTCAGGTGTTTCGGAGCAAACTGGGGTGGGTTCTCCTGATGCACTGCGGAATATGTTGCAGAACTTTACACAGAGTCCGCAGATGATGAATGCTGTCAACCAGATTACTGAACAGGTTGACACCCAAGATTTCGGAAACTTGTTTGCTGGGCTTGGAGGAGGCCAAGGTGGTGGAATTGATATGTCGAGGATGTTCCAACAGATGATGCCCATTGTATCTCGTGCCCTAGGGGCAGGGTCTTCTCCCGCTCAGCCACCCCCTGTCATGGGATCTCAGTCACTGTACAACGAGAGGAGTCTCAACAGAGATGATAATGAGATTGACCTCCAACAAGTGGTTCAAAGGATTGGGCAGCTGAATGCACCGGGAGATGTTTTTCAAGCTGTAGTTGAAAATTCAGTTCAGCTATCTGGCAGAGGAAGCAGTCCACAAGAACTTGTGGATGAGTTGTGCAGGGACGAGGGTCTCTCCAGTGAATACGCTGAGATCTTACGGAGGGACATACGTCGAAGACTTGAGGGTGAATCGGGGCAGGACAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

937

Amino Acids

97.67

Weight (kDa)

5.31

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	25 - 94	5.7e-08	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	26 - 96	1e-22	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	2152
Acc65I	GGTACC	1 cut(s)	1322
AccB1I	GGYRCC	2 cut(s)	1322, 1636
AccB7I	CCANNNNNTGG	1 cut(s)	2602
AccBSI	CCGCTC	2 cut(s)	787, 2516
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	1 cut(s)	1531
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	7 cut(s)	193, 787, 1529, 1634, 2314, 2345, 2514
AclWI	GGATC	3 cut(s)	998, 1678, 2545
AcoI	YGGCCR	3 cut(s)	1526, 2062, 2203
AcsI	RAATTY	5 cut(s)	481, 1023, 1261, 1651, 2662
AcuI	CTGAAG	4 cut(s)	915, 1767, 1887, 1982
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	2 cut(s)	398, 1343
AfaI	GTAC	6 cut(s)	14, 316, 1242, 1324, 1794, 2552
AfiI	CCNNNNNNNGG	9 cut(s)	853, 1014, 1176, 1508, 2156, 2157, 2533, 2534, 2602
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	7 cut(s)	553, 838, 1126, 1393, 1501, 1747, 2197
AjuI	GAANNNNNNNTTGG	2 cut(s)	2589, 2621
AloI	GAACNNNNNNTCC	2 cut(s)	851, 883
Alw21I	GWGCWC	4 cut(s)	219, 1075, 1291, 2120
Alw26I	GTCTC	8 cut(s)	47, 567, 837, 1966, 2085, 2235, 2570, 2738
AlwI	GGATC	3 cut(s)	998, 1678, 2545
AlwNI	CAGNNNCTG	2 cut(s)	2239, 2548
Ama87I	CYCGRG	2 cut(s)	615, 1419
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	9 cut(s)	444, 1018, 1090, 1151, 1178, 1526, 2062, 2203, 2428
ApoI	RAATTY	5 cut(s)	481, 1023, 1261, 1651, 2662
Asp700I	GAANNNNTTC	3 cut(s)	930, 1038, 1885
Asp718I	GGTACC	1 cut(s)	1322
AspA2I	CCTAGG	1 cut(s)	2494
AspLEI	GCGC	3 cut(s)	473, 978, 1925
AsuC2I	CCSGG	1 cut(s)	2634
AsuHPI	GGTGA	4 cut(s)	446, 868, 2021, 2801
AvaI	CYCGRG	2 cut(s)	615, 1419
AvaII	GGWCC	6 cut(s)	32, 411, 1268, 1391, 2195, 2236
AvrII	CCTAGG	1 cut(s)	2494
BaeGI	GKGCMC	2 cut(s)	1641, 2494
BalI	TGGCCA	2 cut(s)	2064, 2205
BanI	GGYRCC	2 cut(s)	1322, 1636
BanII	GRGCYC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	1468, 1500
BauI	CACGAG	2 cut(s)	369, 2487
BbsI	GAAGAC	2 cut(s)	2499, 2785
Bbv12I	GWGCWC	4 cut(s)	219, 1075, 1291, 2120
BccI	CCATC	6 cut(s)	298, 1468, 1562, 1870, 2006, 2165
BceAI	ACGGC	1 cut(s)	1541
BciT130I	CCWGG	7 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	2634
BcoDI	GTCTC	8 cut(s)	47, 567, 837, 1966, 2085, 2235, 2570, 2738
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	5 cut(s)	134, 318, 1067, 1347, 2495
BfmI	CTRYAG	3 cut(s)	2133, 2240, 2652
BfoI	RGCGCY	1 cut(s)	979
BfuAI	ACCTGC	1 cut(s)	2152
BglI	GCCNNNNNGGC	1 cut(s)	2498
BglII	AGATCT	2 cut(s)	451, 2754
BlnI	CCTAGG	1 cut(s)	2494
BlpI	GCTNAGC	2 cut(s)	327, 2517
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	8 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199, 2634
Bme18I	GGWCC	6 cut(s)	32, 411, 1268, 1391, 2195, 2236
BmeT110I	CYCGRG	2 cut(s)	615, 1419
BmiI	GGNNCC	8 cut(s)	34, 366, 412, 447, 1019, 1324, 1638, 1753
BmrFI	CCNGG	8 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199, 2634
BmrI	ACTGGG	2 cut(s)	173, 2298
BmsI	GCATC	8 cut(s)	719, 1004, 1359, 1390, 1502, 1603, 2296, 2463
BmuI	ACTGGG	2 cut(s)	173, 2298
BoxI	GACNNNNGTC	3 cut(s)	1396, 2730, 2772
BpiI	GAAGAC	2 cut(s)	2499, 2785
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 2720, 2752
BpmI	CTGGAG	3 cut(s)	726, 1149, 2722
Bpu10I	CCTNAGC	1 cut(s)	876
Bpu1102I	GCTNAGC	2 cut(s)	327, 2517
BpuEI	CTTGAG	6 cut(s)	203, 552, 1103, 1587, 1822, 2804
BpuMI	CCSGG	1 cut(s)	2634
BsaAI	YACGTR	1 cut(s)	1676
BsaBI	GATNNNNATC	2 cut(s)	80, 228
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	3 cut(s)	47, 837, 2738
BsaJI	CCNNGG	9 cut(s)	838, 851, 900, 1292, 1394, 1523, 1917, 2431, 2494
BsaWI	WCCGGW	1 cut(s)	742
BsaXI	ACNNNNNCTCC	2 cut(s)	1122, 1152
Bsc4I	CCNNNNNNNGG	9 cut(s)	853, 1014, 1176, 1508, 2156, 2157, 2533, 2534, 2602
Bse1I	ACTGG	6 cut(s)	179, 1430, 1477, 1488, 2293, 2739
Bse3DI	GCAATG	5 cut(s)	46, 266, 925, 966, 1062
Bse8I	GATNNNNATC	2 cut(s)	80, 228
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	7 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199
BseDI	CCNNGG	9 cut(s)	838, 851, 900, 1292, 1394, 1523, 1917, 2431, 2494
BseGI	GGATG	7 cut(s)	229, 229, 290, 1374, 1463, 2463, 2716
BseJI	GATNNNNATC	2 cut(s)	80, 228
BseLI	CCNNNNNNNGG	9 cut(s)	853, 1014, 1176, 1508, 2156, 2157, 2533, 2534, 2602
BseMI	GCAATG	5 cut(s)	46, 266, 925, 966, 1062
BseNI	ACTGG	6 cut(s)	179, 1430, 1477, 1488, 2293, 2739
BseRI	GAGGAG	6 cut(s)	65, 357, 555, 633, 2439, 2575
BseSI	GKGCMC	2 cut(s)	1641, 2494
BseX3I	CGGCCG	1 cut(s)	1526
BseYI	CCCAGC	5 cut(s)	35, 294, 1087, 1148, 2414
BsgI	GTGCAG	5 cut(s)	939, 1217, 1320, 1434, 2740
Bsh1236I	CGCG	1 cut(s)	1531
Bsh1285I	CGRYCG	1 cut(s)	1529
BshFI	GGCC	9 cut(s)	446, 1020, 1092, 1153, 1180, 1528, 2064, 2205, 2430
BshNI	GGYRCC	2 cut(s)	1322, 1636
BsiEI	CGRYCG	1 cut(s)	1529
BsiHKAI	GWGCWC	4 cut(s)	219, 1075, 1291, 2120
BsiHKCI	CYCGRG	2 cut(s)	615, 1419
BsiSI	CCGG	3 cut(s)	743, 1093, 2633
BslFI	GGGAC	7 cut(s)	18, 161, 424, 1131, 2132, 2738, 2780
BslI	CCNNNNNNNGG	9 cut(s)	853, 1014, 1176, 1508, 2156, 2157, 2533, 2534, 2602
BsmAI	GTCTC	8 cut(s)	47, 567, 837, 1966, 2085, 2235, 2570, 2738
BsmFI	GGGAC	7 cut(s)	18, 161, 424, 1131, 2132, 2738, 2780
BsmI	GAATGC	2 cut(s)	2362, 2632
BsnI	GGCC	9 cut(s)	446, 1020, 1092, 1153, 1180, 1528, 2064, 2205, 2430
Bso31I	GGTCTC	3 cut(s)	47, 837, 2738
BsoBI	CYCGRG	2 cut(s)	615, 1419
Bsp1286I	GDGCHC	7 cut(s)	219, 367, 1075, 1291, 1641, 2120, 2494
Bsp13I	TCCGGA	1 cut(s)	742
Bsp1407I	TGTACA	1 cut(s)	2550
Bsp143I	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
Bsp1720I	GCTNAGC	2 cut(s)	327, 2517
BspACI	CCGC	7 cut(s)	193, 787, 1529, 1634, 2314, 2345, 2514
BspANI	GGCC	9 cut(s)	446, 1020, 1092, 1153, 1180, 1528, 2064, 2205, 2430
BspEI	TCCGGA	1 cut(s)	742
BspFNI	CGCG	1 cut(s)	1531
BspLI	GGNNCC	8 cut(s)	34, 366, 412, 447, 1019, 1324, 1638, 1753
BspMAI	CTGCAG	2 cut(s)	2137, 2244
BspMI	ACCTGC	1 cut(s)	2152
BspPI	GGATC	3 cut(s)	998, 1678, 2545
BspQI	GCTCTTC	1 cut(s)	1080
BspT107I	GGYRCC	2 cut(s)	1322, 1636
BspTNI	GGTCTC	3 cut(s)	47, 837, 2738
BsrBI	CCGCTC	2 cut(s)	787, 2516
BsrDI	GCAATG	5 cut(s)	46, 266, 925, 966, 1062
BsrGI	TGTACA	1 cut(s)	2550
BsrI	ACTGG	6 cut(s)	179, 1430, 1477, 1488, 2293, 2739
BssECI	CCNNGG	9 cut(s)	838, 851, 900, 1292, 1394, 1523, 1917, 2431, 2494
BssMI	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	2 cut(s)	369, 2487
BssT1I	CCWWGG	5 cut(s)	851, 900, 1292, 2431, 2494
Bst2BI	CACGAG	2 cut(s)	369, 2487
Bst2UI	CCWGG	7 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199
Bst4CI	ACNGT	7 cut(s)	70, 110, 398, 534, 636, 2146, 2550
Bst6I	CTCTTC	3 cut(s)	1080, 1546, 2001
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	2 cut(s)	268, 1343
BstAUI	TGTACA	1 cut(s)	2550
BstBAI	YACGTR	1 cut(s)	1676
BstC8I	GCNNGC	4 cut(s)	789, 1053, 1155, 1982
BstDSI	CCRYGG	1 cut(s)	1523
BstENI	CCTNNNNNAGG	2 cut(s)	1012, 1506
BstF5I	GGATG	7 cut(s)	229, 229, 290, 1374, 1463, 2463, 2716
BstFNI	CGCG	1 cut(s)	1531
BstH2I	RGCGCY	1 cut(s)	979
BstHHI	GCGC	3 cut(s)	473, 978, 1925
BstKTI	GATC	9 cut(s)	78, 229, 430, 454, 1006, 1673, 2180, 2540, 2757
BstMAI	GTCTC	8 cut(s)	47, 567, 837, 1966, 2085, 2235, 2570, 2738
BstMBI	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
BstMCI	CGRYCG	1 cut(s)	1529
BstNI	CCWGG	7 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199
BstNSI	RCATGY	1 cut(s)	1319
BstPAI	GACNNNNGTC	3 cut(s)	1396, 2730, 2772
BstSCI	CCNGG	8 cut(s)	553, 838, 1126, 1393, 1501, 1747, 2197, 2632
BstSFI	CTRYAG	3 cut(s)	2133, 2240, 2652
BstSLI	GKGCMC	2 cut(s)	1641, 2494
BstUI	CGCG	1 cut(s)	1531
BstV2I	GAAGAC	2 cut(s)	2499, 2785
BstX2I	RGATCY	3 cut(s)	451, 2537, 2754
BstXI	CCANNNNNNTGG	1 cut(s)	2438
BstYI	RGATCY	3 cut(s)	451, 2537, 2754
BstZI	CGGCCG	1 cut(s)	1526
BsuRI	GGCC	9 cut(s)	446, 1020, 1092, 1153, 1180, 1528, 2064, 2205, 2430
BtgI	CCRYGG	1 cut(s)	1523
BtsCI	GGATG	7 cut(s)	229, 229, 290, 1374, 1463, 2463, 2716
BtsI	GCAGTG	1 cut(s)	2309
BtsIMutI	CAGTG	6 cut(s)	403, 1437, 1495, 2309, 2546, 2746
BveI	ACCTGC	1 cut(s)	2152
Cac8I	GCNNGC	4 cut(s)	789, 1053, 1155, 1982
CaiI	CAGNNNCTG	2 cut(s)	2239, 2548
CfoI	GCGC	3 cut(s)	473, 978, 1925
CseI	GACGC	3 cut(s)	163, 755, 1728
CsiI	ACCWGGT	1 cut(s)	1747
Csp6I	GTAC	6 cut(s)	13, 315, 1241, 1323, 1793, 2551
CviAII	CATG	7 cut(s)	442, 593, 781, 944, 1114, 1316, 2533
CviQI	GTAC	6 cut(s)	13, 315, 1241, 1323, 1793, 2551
DpnI	GATC	9 cut(s)	77, 228, 429, 453, 1005, 1672, 2179, 2539, 2756
DpnII	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
DraIII	CACNNNGTG	2 cut(s)	398, 1343
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	3 cut(s)	1526, 2062, 2203
EagI	CGGCCG	1 cut(s)	1526
Eam1104I	CTCTTC	3 cut(s)	1080, 1546, 2001
EarI	CTCTTC	3 cut(s)	1080, 1546, 2001
EclXI	CGGCCG	1 cut(s)	1526
Eco130I	CCWWGG	5 cut(s)	851, 900, 1292, 2431, 2494
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	3 cut(s)	47, 837, 2738
Eco47I	GGWCC	6 cut(s)	32, 411, 1268, 1391, 2195, 2236
Eco52I	CGGCCG	1 cut(s)	1526
Eco57I	CTGAAG	4 cut(s)	915, 1767, 1887, 1982
Eco88I	CYCGRG	2 cut(s)	615, 1419
EcoNI	CCTNNNNNAGG	2 cut(s)	1012, 1506
EcoO109I	RGGNCCY	4 cut(s)	411, 1178, 2195, 2236
EcoRI	GAATTC	2 cut(s)	481, 1651
EcoRII	CCWGG	7 cut(s)	553, 838, 1126, 1393, 1501, 1747, 2197
EcoT14I	CCWWGG	5 cut(s)	851, 900, 1292, 2431, 2494
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	5 cut(s)	851, 900, 1292, 2431, 2494
FaeI	CATG	7 cut(s)	445, 596, 784, 947, 1117, 1319, 2536
FalI	AAGNNNNNCTT	4 cut(s)	1035, 1067, 1210, 1242
FaqI	GGGAC	7 cut(s)	18, 161, 424, 1131, 2132, 2738, 2780
FatI	CATG	7 cut(s)	441, 592, 780, 943, 1113, 1315, 2532
FauI	CCCGC	2 cut(s)	780, 2521
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	536
FokI	GGATG	7 cut(s)	216, 236, 277, 1381, 1450, 2470, 2723
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	5 cut(s)	134, 318, 1067, 1347, 2495
GlaI	GCGC	3 cut(s)	472, 977, 1924
GsaI	CCCAGC	5 cut(s)	39, 298, 1091, 1152, 2418
GsuI	CTGGAG	3 cut(s)	726, 1149, 2722
HaeII	RGCGCY	1 cut(s)	979
HaeIII	GGCC	9 cut(s)	446, 1020, 1092, 1153, 1180, 1528, 2064, 2205, 2430
HapII	CCGG	3 cut(s)	743, 1093, 2633
HgaI	GACGC	3 cut(s)	163, 755, 1728
HhaI	GCGC	3 cut(s)	473, 978, 1925
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	7 cut(s)	445, 596, 784, 947, 1117, 1319, 2536
Hin6I	GCGC	3 cut(s)	471, 976, 1923
HinP1I	GCGC	3 cut(s)	471, 976, 1923
HincII	GTYRAC	2 cut(s)	2365, 2386
HindII	GTYRAC	2 cut(s)	2365, 2386
HpaII	CCGG	3 cut(s)	743, 1093, 2633
HphI	GGTGA	4 cut(s)	446, 868, 2021, 2801
Hpy166II	GTNNAC	9 cut(s)	537, 859, 1303, 1717, 1793, 1847, 2365, 2386, 2696
Hpy188III	TCNNGA	7 cut(s)	85, 639, 743, 1082, 1785, 1815, 2303
Hpy8I	GTNNAC	9 cut(s)	537, 859, 1303, 1717, 1793, 1847, 2365, 2386, 2696
Hpy99I	CGWCG	2 cut(s)	1744, 2778
HpyAV	CCTTC	8 cut(s)	17, 424, 431, 578, 732, 876, 1358, 1771
HpyCH4III	ACNGT	7 cut(s)	70, 110, 398, 534, 636, 2146, 2550
HpyCH4IV	ACGT	3 cut(s)	1675, 1966, 2773
HpySE526I	ACGT	3 cut(s)	1675, 1966, 2773
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	7 cut(s)	445, 596, 784, 947, 1117, 1319, 2536
HspAI	GCGC	3 cut(s)	471, 976, 1923
Kpn2I	TCCGGA	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	1326
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
LguI	GCTCTTC	1 cut(s)	1080
LmnI	GCTCC	7 cut(s)	370, 707, 784, 992, 1226, 1294, 2281
LweI	GCATC	8 cut(s)	719, 1004, 1359, 1390, 1502, 1603, 2296, 2463
MabI	ACCWGGT	1 cut(s)	1747
MaeI	CTAG	5 cut(s)	134, 318, 1067, 1347, 2495
MaeII	ACGT	3 cut(s)	1675, 1966, 2773
MaeIII	GTNAC	2 cut(s)	2053, 2544
MalI	GATC	9 cut(s)	77, 228, 429, 453, 1005, 1672, 2179, 2539, 2756
MbiI	CCGCTC	2 cut(s)	787, 2516
MboI	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
MflI	RGATCY	3 cut(s)	451, 2537, 2754
MhlI	GDGCHC	7 cut(s)	219, 367, 1075, 1291, 1641, 2120, 2494
MlsI	TGGCCA	2 cut(s)	2064, 2205
MluNI	TGGCCA	2 cut(s)	2064, 2205
MlyI	GAGTC	7 cut(s)	104, 607, 1532, 1987, 2254, 2350, 2572
MmeI	TCCRAC	4 cut(s)	403, 1941, 2488, 2620
Mox20I	TGGCCA	2 cut(s)	2064, 2205
MroI	TCCGGA	1 cut(s)	742
MroXI	GAANNNNTTC	3 cut(s)	930, 1038, 1885
MscI	TGGCCA	2 cut(s)	2064, 2205
MseI	TTAA	4 cut(s)	519, 1143, 1569, 2255
MslI	CAYNNNNRTG	5 cut(s)	597, 1068, 1193, 1314, 1386
Msp20I	TGGCCA	2 cut(s)	2064, 2205
MspA1I	CMGCKG	2 cut(s)	193, 2623
MspI	CCGG	3 cut(s)	743, 1093, 2633
MspR9I	CCNGG	8 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199, 2634
Mva1269I	GAATGC	2 cut(s)	2362, 2632
MvaI	CCWGG	7 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199
MvnI	CGCG	1 cut(s)	1531
NciI	CCSGG	1 cut(s)	2634
NdeII	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
NlaIII	CATG	7 cut(s)	445, 596, 784, 947, 1117, 1319, 2536
NlaIV	GGNNCC	8 cut(s)	34, 366, 412, 447, 1019, 1324, 1638, 1753
NmuCI	GTSAC	1 cut(s)	2544
NspI	RCATGY	1 cut(s)	1319
PaeR7I	CTCGAG	2 cut(s)	615, 1419
PciSI	GCTCTTC	1 cut(s)	1080
PctI	GAATGC	2 cut(s)	2362, 2632
PdmI	GAANNNNTTC	3 cut(s)	930, 1038, 1885
PfeI	GAWTC	9 cut(s)	62, 1034, 1252, 1406, 1811, 1818, 1832, 2044, 2792
PflMI	CCANNNNNTGG	1 cut(s)	2602
PfoI	TCCNGGA	1 cut(s)	1126
PleI	GAGTC	7 cut(s)	103, 607, 1532, 1987, 2253, 2349, 2571
PpsI	GAGTC	7 cut(s)	103, 607, 1532, 1987, 2253, 2349, 2571
Ppu21I	YACGTR	1 cut(s)	1676
PpuMI	RGGWCCY	3 cut(s)	411, 2195, 2236
PshAI	GACNNNNGTC	3 cut(s)	1396, 2730, 2772
Psp5II	RGGWCCY	3 cut(s)	411, 2195, 2236
Psp6I	CCWGG	7 cut(s)	553, 838, 1126, 1393, 1501, 1747, 2197
PspFI	CCCAGC	5 cut(s)	35, 294, 1087, 1148, 2414
PspGI	CCWGG	7 cut(s)	553, 838, 1126, 1393, 1501, 1747, 2197
PspN4I	GGNNCC	8 cut(s)	34, 366, 412, 447, 1019, 1324, 1638, 1753
PspPPI	RGGWCCY	3 cut(s)	411, 2195, 2236
PspXI	VCTCGAGB	2 cut(s)	615, 1419
PstI	CTGCAG	2 cut(s)	2137, 2244
PstNI	CAGNNNCTG	2 cut(s)	2239, 2548
PsuI	RGATCY	3 cut(s)	451, 2537, 2754
PvuII	CAGCTG	1 cut(s)	2623
RsaI	GTAC	6 cut(s)	14, 316, 1242, 1324, 1794, 2552
RsaNI	GTAC	6 cut(s)	13, 315, 1241, 1323, 1793, 2551
RseI	CAYNNNNRTG	5 cut(s)	597, 1068, 1193, 1314, 1386
SapI	GCTCTTC	1 cut(s)	1080
SaqAI	TTAA	4 cut(s)	519, 1143, 1569, 2255
Sau3AI	GATC	9 cut(s)	75, 226, 427, 451, 1003, 1670, 2177, 2537, 2754
SbfI	CCTGCAGG	1 cut(s)	2137
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	7 cut(s)	104, 607, 1532, 1987, 2254, 2350, 2572
ScrFI	CCNGG	8 cut(s)	555, 840, 1128, 1395, 1503, 1749, 2199, 2634
SdaI	CCTGCAGG	1 cut(s)	2137
SduI	GDGCHC	7 cut(s)	219, 367, 1075, 1291, 1641, 2120, 2494
SexAI	ACCWGGT	1 cut(s)	1747
SfaNI	GCATC	8 cut(s)	719, 1004, 1359, 1390, 1502, 1603, 2296, 2463
SfcI	CTRYAG	3 cut(s)	2133, 2240, 2652
Sfr274I	CTCGAG	2 cut(s)	615, 1419
SinI	GGWCC	6 cut(s)	32, 411, 1268, 1391, 2195, 2236
SlaI	CTCGAG	2 cut(s)	615, 1419
SmiMI	CAYNNNNRTG	5 cut(s)	597, 1068, 1193, 1314, 1386
SmlI	CTYRAG	8 cut(s)	218, 567, 615, 1082, 1419, 1602, 1801, 2783
SmoI	CTYRAG	8 cut(s)	218, 567, 615, 1082, 1419, 1602, 1801, 2783
SpeI	ACTAGT	1 cut(s)	317
Sse8387I	CCTGCAGG	1 cut(s)	2137
SsiI	CCGC	7 cut(s)	193, 787, 1529, 1634, 2314, 2345, 2514
SspI	AATATT	1 cut(s)	1441
SspMI	CTAG	5 cut(s)	134, 318, 1067, 1347, 2495
StyD4I	CCNGG	8 cut(s)	553, 838, 1126, 1393, 1501, 1747, 2197, 2632
StyI	CCWWGG	5 cut(s)	851, 900, 1292, 2431, 2494
TaaI	ACNGT	7 cut(s)	70, 110, 398, 534, 636, 2146, 2550
TaiI	ACGT	3 cut(s)	1678, 1969, 2776
TaqI	TCGA	5 cut(s)	616, 1250, 1420, 2453, 2776
TaqII	GACCGA	1 cut(s)	1931
TatI	WGTACW	2 cut(s)	12, 2550
TauI	GCSGC	1 cut(s)	1531
TfiI	GAWTC	9 cut(s)	62, 1034, 1252, 1406, 1811, 1818, 1832, 2044, 2792
Tru1I	TTAA	4 cut(s)	519, 1143, 1569, 2255
Tru9I	TTAA	4 cut(s)	519, 1143, 1569, 2255
TscAI	CASTG	6 cut(s)	403, 1437, 1495, 2316, 2553, 2746
TseFI	GTSAC	1 cut(s)	2544
Tsp45I	GTSAC	1 cut(s)	2544
TspDTI	ATGAA	8 cut(s)	36, 297, 591, 788, 1274, 1298, 1644, 2369
TspGWI	ACGGA	2 cut(s)	1734, 2776
TspRI	CASTG	6 cut(s)	403, 1437, 1495, 2316, 2553, 2746
Van91I	CCANNNNNTGG	1 cut(s)	2602
VpaK11BI	GGWCC	6 cut(s)	32, 411, 1268, 1391, 2195, 2236
XagI	CCTNNNNNAGG	2 cut(s)	1012, 1506
XapI	RAATTY	5 cut(s)	481, 1023, 1261, 1651, 2662
XceI	RCATGY	1 cut(s)	1319
XhoI	CTCGAG	2 cut(s)	615, 1419
XmaJI	CCTAGG	1 cut(s)	2494
XmiI	GTMKAC	1 cut(s)	536
XmnI	GAANNNNTTC	3 cut(s)	930, 1038, 1885
XspI	CTAG	5 cut(s)	134, 318, 1067, 1347, 2495
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.