Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

6481113 .. 6483646

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTGACAGACAAGAGCAAGAAGGCGAAAACCGAAGAAGAAAACGTCGAGCAAATCGATGCAGAGCTTGTCCTCTCAATCGAAAAGCTTCAAGAGATCCAAGACGACCTCGAGAAGATAAATGAAAAGGCTAGTGATGAAGTGTTGGAAGTGGAGCAGAAATATAATGTGATAAGGAAACCTGTTTATGACAAGCGTAACGAGATCATCAAAACCATCCCTGATTTCTGGTTAACTGCTTTCTTGAGTCACCCTGCTTTAGGTGAACTTTTGACTGAAGAAGACCAAAAGATTTTCAAATATCTTAGCTCTCTTGATGTTGAGGATGCCAAAGATGTGAAATCTGGATACTCTATCACTTTTTCCTTCAATCCCAATCCATTTTTTGAAGATGGAAAACTGACAAAGACTTTTACCTTTCTCGAAGAAGGGACAACCAAAATCACAGCCACGCCTATCAAATGGAAAGAGGGCAAAGGCCTGGCGAATGGAGTGAATCATGAGAAGAATGGAAACAAACGTGCACTACCTGAAGAGAGCTTCTTTACCTGGTTTAGTGATGCTCAACACAAGGAGGATGTTGAGGATGAGATGCAAGACGAGCAGGTTGCAGATATCATCAAGGAAGATTTGTGGCCCAACCCTCTCACCTACTTCAACAATGACGCTGATGAAGAGGACTTTGATGGAGACGATGATGGAGATGAAGAGGAGAAAGAAGGTGACTCTGATGAAGATGATGACGAAGAAGACGAAGTTGGTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

256

Amino Acids

29.48

Weight (kDa)

4.18

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	27 - 71	1.9e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	71 - 221	1.2e-30	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AclWI	GGATC	1 cut(s)	91
AcuI	CTGAAG	2 cut(s)	297, 552
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	92, 298, 370, 389, 658
AjnI	CCWGG	2 cut(s)	480, 548
AjuI	GAANNNNNNNTTGG	1 cut(s)	741
AluBI	AGCT	4 cut(s)	67, 88, 309, 540
AluI	AGCT	4 cut(s)	67, 88, 309, 540
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	684
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	478, 635
ApaLI	GTGCAC	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	636
AsuHPI	GGTGA	5 cut(s)	16, 242, 275, 640, 734
AvaI	CYCGRG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	526
BbsI	GAAGAC	2 cut(s)	288, 756
Bbv12I	GWGCWC	1 cut(s)	526
BccI	CCATC	4 cut(s)	224, 386, 680, 692
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	2 cut(s)	482, 550
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	482, 550
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	636
BmrFI	CCNGG	2 cut(s)	482, 550
BmsI	GCATC	4 cut(s)	49, 316, 550, 582
BpiI	GAAGAC	2 cut(s)	288, 756
BpuEI	CTTGAG	1 cut(s)	265
Bsa29I	ATCGAT	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	482, 550
BseCI	ATCGAT	1 cut(s)	57
BseGI	GGATG	4 cut(s)	216, 331, 583, 592
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	526
BshFI	GGCC	2 cut(s)	480, 637
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	684
BsmBI	CGTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	480, 637
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	96, 204
BspANI	GGCC	2 cut(s)	480, 637
BspDI	ATCGAT	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	91
BssMI	GATC	2 cut(s)	96, 204
Bst2UI	CCWGG	2 cut(s)	482, 550
Bst6I	CTCTTC	3 cut(s)	528, 669, 702
BstDEI	CTNAG	1 cut(s)	305
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	4 cut(s)	216, 331, 583, 592
BstKTI	GATC	2 cut(s)	99, 207
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	2 cut(s)	96, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstNI	CCWGG	2 cut(s)	482, 550
BstSCI	CCNGG	2 cut(s)	480, 548
BstSLI	GKGCMC	1 cut(s)	526
BstV2I	GAAGAC	2 cut(s)	288, 756
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	480, 637
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	216, 331, 583, 592
BveI	ACCTGC	1 cut(s)	595
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	636
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	674
CsiI	ACCWGGT	1 cut(s)	548
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	8 cut(s)	67, 88, 131, 309, 449, 480, 540, 637
CviKI_1	RGCY	8 cut(s)	67, 88, 131, 309, 449, 480, 540, 637
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	98, 206
DpnII	GATC	2 cut(s)	96, 204
Eam1104I	CTCTTC	3 cut(s)	528, 669, 702
EarI	CTCTTC	3 cut(s)	528, 669, 702
Eco147I	AGGCCT	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	297, 552
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	480, 548
EcoRV	GATATC	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	684
FaeI	CATG	1 cut(s)	503
FaiI	YATR	3 cut(s)	165, 189, 501
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	1 cut(s)	499
FokI	GGATG	4 cut(s)	203, 338, 590, 599
FspBI	CTAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	480, 637
HgaI	GACGC	1 cut(s)	674
Hin1II	CATG	1 cut(s)	503
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	3 cut(s)	247, 496, 725
HpaI	GTTAAC	1 cut(s)	234
HphI	GGTGA	5 cut(s)	16, 242, 275, 640, 734
Hpy166II	GTNNAC	3 cut(s)	234, 266, 524
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	7 cut(s)	92, 112, 244, 314, 345, 422, 500
Hpy8I	GTNNAC	3 cut(s)	234, 266, 524
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	16, 376, 422, 713
HpyCH4IV	ACGT	2 cut(s)	45, 520
HpyCH4V	TGCA	4 cut(s)	62, 524, 595, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	2 cut(s)	45, 520
Hsp92II	CATG	1 cut(s)	503
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	96, 204
LmnI	GCTCC	1 cut(s)	154
LweI	GCATC	4 cut(s)	49, 316, 550, 582
MabI	ACCWGGT	1 cut(s)	548
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	45, 520
MaeIII	GTNAC	4 cut(s)	4, 197, 248, 722
MalI	GATC	2 cut(s)	98, 206
MboI	GATC	2 cut(s)	96, 204
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	526
MlyI	GAGTC	2 cut(s)	256, 719
MmeI	TCCRAC	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	482, 550
MvaI	CCWGG	2 cut(s)	482, 550
MwoI	GCNNNNNNNGC	1 cut(s)	601
NdeII	GATC	2 cut(s)	96, 204
NlaIII	CATG	1 cut(s)	503
NmuCI	GTSAC	3 cut(s)	4, 248, 722
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 750
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	255, 719
PpsI	GAGTC	2 cut(s)	255, 719
Psp6I	CCWGG	2 cut(s)	480, 548
PspGI	CCWGG	2 cut(s)	480, 548
PspPI	GGNCC	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	96, 204
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	256, 719
ScrFI	CCNGG	2 cut(s)	482, 550
SduI	GDGCHC	1 cut(s)	526
SexAI	ACCWGGT	1 cut(s)	548
SfaNI	GCATC	4 cut(s)	49, 316, 550, 582
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	110, 244
SmoI	CTYRAG	2 cut(s)	110, 244
SseBI	AGGCCT	1 cut(s)	480
SspMI	CTAG	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	480, 548
TaiI	ACGT	2 cut(s)	48, 523
TaqI	TCGA	5 cut(s)	48, 57, 81, 111, 423
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	3 cut(s)	4, 248, 722
Tsp45I	GTSAC	3 cut(s)	4, 248, 722
TspDTI	ATGAA	5 cut(s)	138, 153, 687, 720, 747
VneI	GTGCAC	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.