Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032521.1

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Forward (+)

450 .. 2094

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgaagatcaatgaggaagccagtgataaggtccttgaagtggagcaaaagtacaatgaaattcgcaagccagtttacgataagcgaaatgatatcatcaaggccattcctgacttttggttaactgcgtttatgagtcatcccgcgcttggtgaacttttgacggatgatgatcaaaagattttcaagcatctaacttctctggaagtggaggattgcaaagacgtgaaatctggttataccatttcactcttcttcagccccaatccttactttgaagacacaaagctttcaaagacctttaccttcctggatgaaggaacaaaagttactgctacatcaataaagtggaaagaaggaatgggcatacccaatggaactaatcatgagaagaaagggaacaaacgacctccctctgaggaaagcttctttagctggtttggtgatagtcaagagaaagatattatggatgagattcatgatgagattgcagaggtcattaaggaggacttgtggcccaatcctcttacttacttcagccatgatgctgatgatgaggaatttgacgaggacgaagttgatgaagaggtaatgcagatccttttagggttatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

205

Amino Acids

23.82

Weight (kDa)

4.44

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	60, 560
AcuI	CTGAAG	2 cut(s)	241, 520
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	40, 149
AgsI	TTSAA	4 cut(s)	38, 187, 278, 294
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	289, 426, 435
AluI	AGCT	3 cut(s)	289, 426, 435
AlwI	GGATC	1 cut(s)	592
AoxI	GGCC	2 cut(s)	102, 515
ApoI	RAATTY	2 cut(s)	60, 560
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	31, 516
AsuHPI	GGTGA	2 cut(s)	164, 455
AvaII	GGWCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	31
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	31, 516
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	199, 535
BpiI	GAAGAC	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 149
Bse1I	ACTGG	2 cut(s)	21, 71
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	4 cut(s)	139, 172, 319, 475
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	40, 149
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	21, 71
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	104, 517
BslI	CCNNNNNNNGG	2 cut(s)	40, 149
BsnI	GGCC	2 cut(s)	104, 517
Bsp143I	GATC	3 cut(s)	6, 172, 597
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	104, 517
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	2 cut(s)	385, 478
BspPI	GGATC	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	21, 71
BssMI	GATC	3 cut(s)	6, 172, 597
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	257, 579
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	4 cut(s)	139, 172, 319, 475
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	9, 175, 600
BstMBI	GATC	3 cut(s)	6, 172, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
BsuRI	GGCC	2 cut(s)	104, 517
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	4 cut(s)	139, 172, 319, 475
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	68
CciI	TCATGA	2 cut(s)	385, 478
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	31, 516
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	386, 479, 542
CviJI	RGCY	9 cut(s)	20, 70, 104, 261, 289, 426, 435, 517, 540
CviKI_1	RGCY	9 cut(s)	20, 70, 104, 261, 289, 426, 435, 517, 540
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	8, 174, 599
DpnII	GATC	3 cut(s)	6, 172, 597
Eam1104I	CTCTTC	2 cut(s)	257, 579
EarI	CTCTTC	2 cut(s)	257, 579
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	241, 520
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	3 cut(s)	389, 482, 545
FaiI	YATR	8 cut(s)	134, 240, 368, 387, 467, 480, 543, 613
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	3 cut(s)	385, 478, 541
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	172
FokI	GGATG	4 cut(s)	126, 179, 326, 482
GlaI	GCGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	104, 517
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	389, 482, 545
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	2 cut(s)	287, 424
HinfI	GANTC	2 cut(s)	136, 475
HpaI	GTTAAC	1 cut(s)	123
HphI	GGTGA	2 cut(s)	164, 455
Hpy166II	GTNNAC	3 cut(s)	76, 123, 155
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	5 cut(s)	110, 203, 386, 452, 479
Hpy8I	GTNNAC	3 cut(s)	76, 123, 155
HpyAV	CCTTC	3 cut(s)	311, 316, 350
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	219, 491, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	389, 482, 545
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	6, 172, 597
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	34, 84, 123, 188, 219, 296, 323, 421
LweI	GCATC	2 cut(s)	199, 535
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	8, 174, 599
MboI	GATC	3 cut(s)	6, 172, 597
MboII	GAAGA	6 cut(s)	16, 244, 247, 290, 403, 596
MflI	RGATCY	1 cut(s)	597
MluCI	AATT	2 cut(s)	60, 560
MlyI	GAGTC	1 cut(s)	145
MseI	TTAA	2 cut(s)	122, 501
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	3 cut(s)	6, 172, 597
NlaIII	CATG	3 cut(s)	389, 482, 545
PagI	TCATGA	2 cut(s)	385, 478
PfeI	GAWTC	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	309
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	31, 516
PspPPI	RGGWCCY	1 cut(s)	31
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
PsuI	RGATCY	1 cut(s)	597
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	122, 501
Sau3AI	GATC	3 cut(s)	6, 172, 597
Sau96I	GGNCC	2 cut(s)	31, 516
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	199, 535
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	60, 560
SsiI	CCGC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	228
TasI	AATT	2 cut(s)	60, 560
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	122, 501
Tru9I	TTAA	2 cut(s)	122, 501
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	17, 72, 330, 467, 597
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	60, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.