Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

2927119 .. 2932545

Gene Structure 5427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG039500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGGCGGACAAGGGAAAGAAGCCCAAGCTTTCAGACAAGCCCGAAGACGAAAACCCTGACCAAATCGACGAGAAGCTCGTCCTCTCCATCGAAAAGTTGCAGGAGGTCCAAGACGAGCTCGAAAAGATCAATGAGGAAGCCAGTGATAAGGTCCTTGAAGTGGAGCAAAAGTACAATGAAATTCGCAAGCCAGTTTACGATAAGCGAAATGATATCATCAAGGCCATTCCTGACTTTTGGTTAACTGCGTTTATGAGTCATCCTGCGCTTGGTGAACTTTTGACGGATGAGGATCAAAAGATTTTCAAGCATCTAACTTCTCTGGAAGTGGAGGATTGCAAAGACGTGAAATCTGGTTATACCATTTCACTCTTCTTCAGCCCCAATCCTTACTTTGAAGACACAAAGCTTTCAAAGACCTTTACCTTCCTGGATGAAGGAACAAAAGTTACTGCTACATCAATAAAGTGGAAAGAAGGAATGGGCATACCCAATGGAACTAATCATGAGAAGAAAGGGAACAAACGGCCTCCCTCTGAGGAAAGCTTCTTTAGCTGGTTTGGTGATAGTCAAGAGAAAGATATTATGGATGAGATTCATGATGAGATTGCAGAGGTCATTAAGGAGGACTTGTGGCCCAATCCTCTTACTTACTTCAGCCATGATGCTGATGATGAGGAATTTGACGAGGACGAAGTTGATGAAGAGGTAATGCAGATCCTTTTAGGGTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

246

Amino Acids

28.51

Weight (kDa)

4.42

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	31 - 75	2.4e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	75 - 221	1.3e-27	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	303, 715
AcsI	RAATTY	2 cut(s)	183, 683
AcuI	CTGAAG	2 cut(s)	364, 643
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	163, 272
AgsI	TTSAA	4 cut(s)	161, 310, 401, 417
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	6 cut(s)	31, 79, 121, 412, 549, 558
AluI	AGCT	6 cut(s)	31, 79, 121, 412, 549, 558
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	303, 715
AoxI	GGCC	3 cut(s)	225, 530, 638
ApoI	RAATTY	2 cut(s)	183, 683
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	109, 154, 639
AsuHPI	GGTGA	2 cut(s)	287, 578
AvaII	GGWCC	2 cut(s)	109, 154
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	54, 408
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	2 cut(s)	109, 154
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	109, 154, 639
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	322, 658
BpiI	GAAGAC	2 cut(s)	54, 408
BsaBI	GATNNNNATC	1 cut(s)	294
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 272
Bse1I	ACTGG	2 cut(s)	144, 194
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	4 cut(s)	262, 295, 442, 598
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	163, 272
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	144, 194
BshFI	GGCC	3 cut(s)	227, 532, 640
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	163, 272
BsnI	GGCC	3 cut(s)	227, 532, 640
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	129, 295, 720
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	3 cut(s)	227, 532, 640
BspCNI	CTCAG	1 cut(s)	532
BspHI	TCATGA	2 cut(s)	508, 601
BspPI	GGATC	2 cut(s)	303, 715
BsrI	ACTGG	2 cut(s)	144, 194
BssMI	GATC	3 cut(s)	129, 295, 720
Bst2UI	CCWGG	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	380, 702
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	540
BstF5I	GGATG	4 cut(s)	262, 295, 442, 598
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	132, 298, 723
BstMBI	GATC	3 cut(s)	129, 295, 720
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstV2I	GAAGAC	2 cut(s)	54, 408
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	227, 532, 640
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	4 cut(s)	262, 295, 442, 598
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	2 cut(s)	508, 601
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	109, 154, 639
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	509, 602, 665
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	3 cut(s)	131, 297, 722
DpnII	GATC	3 cut(s)	129, 295, 720
Eam1104I	CTCTTC	2 cut(s)	380, 702
EarI	CTCTTC	2 cut(s)	380, 702
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	109, 154
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	364, 643
EcoICRI	GAGCTC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	512, 605, 668
FaiI	YATR	8 cut(s)	257, 363, 491, 510, 590, 603, 666, 736
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	3 cut(s)	508, 601, 664
FokI	GGATG	4 cut(s)	249, 302, 449, 605
FriOI	GRGCYC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	227, 532, 640
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	512, 605, 668
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	3 cut(s)	29, 410, 547
HinfI	GANTC	2 cut(s)	259, 598
HpaI	GTTAAC	1 cut(s)	246
HphI	GGTGA	2 cut(s)	287, 578
Hpy166II	GTNNAC	3 cut(s)	199, 246, 278
Hpy188I	TCNGA	2 cut(s)	37, 541
Hpy188III	TCNNGA	5 cut(s)	233, 326, 509, 575, 602
Hpy8I	GTNNAC	3 cut(s)	199, 246, 278
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	434, 439, 473
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	103, 342, 614, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	512, 605, 668
HspAI	GCGC	1 cut(s)	269
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	129, 295, 720
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	2 cut(s)	322, 658
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	131, 297, 722
MboI	GATC	3 cut(s)	129, 295, 720
MboII	GAAGA	6 cut(s)	59, 367, 370, 413, 526, 719
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	183, 683
MlyI	GAGTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	245, 624
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeII	GATC	3 cut(s)	129, 295, 720
NlaIII	CATG	3 cut(s)	512, 605, 668
PagI	TCATGA	2 cut(s)	508, 601
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	432
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspPI	GGNCC	3 cut(s)	109, 154, 639
PspPPI	RGGWCCY	1 cut(s)	154
PsrI	GAACNNNNNNTAC	2 cut(s)	436, 468
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	245, 624
Sau3AI	GATC	3 cut(s)	129, 295, 720
Sau96I	GGNCC	3 cut(s)	109, 154, 639
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	322, 658
SinI	GGWCC	2 cut(s)	109, 154
Sse9I	AATT	2 cut(s)	183, 683
SsiI	CCGC	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	432
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	69, 93, 123
TasI	AATT	2 cut(s)	183, 683
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	2 cut(s)	245, 624
Tru9I	TTAA	2 cut(s)	245, 624
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	195, 453, 590, 720
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	109, 154
XapI	RAATTY	2 cut(s)	183, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.