Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

15692674 .. 15697621

Gene Structure 4948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G191400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTGGCTGATAAGGGCAAGAAGCTGAAGCTTTCAGAGAAAGCCGAAGATGATAACTCGGACCACATCGATGAGAAGCTCGTCCTTTCCATCGAAAAGTTGCAGGAGGTCCAAGACGAGCTCGAAAAGATCAATGAGGAAGCCAGTGATAAAGTCCTGGAAGTGGAGCAGAAGTATAACGAGATACGCAAGCCGGTGTATGATAAACGAAATGATATCATCAAGTCCATTCCCGACTTTTGGTTAACTGCTTTCCTGAGTCATCCTGCGCTTGGTGAACTTTTGACCGAAGATGATCAAAAGATTTTCAAGCATCTAACTTCTCTGGAAGTGGAGGATTTTAAGGATGTGAAGTCTGGTTACGCCATTACTTTCCATTTCAGCCCCAATCCTTATTTTGAAGATGCGAAGCTTACGAAGACCTTTACTTTCCTTGATGAAGTAACAAAAGTTTCTGCCACATCAATAAAGTGGAAAGAGGGAATGGGCATACCTAATGGAGTTAATCATGATAAGAAAGGGAACAAGCGACCTCAGGCTGAGGAGAGCTTCTTTAGCTGGTTTAGTGATAGTCAACAGAAAGATATTTTGGACGATGAGATTCATGATGAGATTGCGGAGGTTATTAAGGAGGATCTGTGGCCCAATCCTCTTACTTATTTCAACCATGAGGCTGATGATGAGGATTTCGATGATGAAGAGGCTGATGAAGAGGGAAAGAATGAGGATGATGACTCTGAAGAAGATGACGATGACCAAGAAGATGATGAAGACGGTGATGAGGATGATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

266

Amino Acids

30.68

Weight (kDa)

4.23

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	1 cut(s)	642
AcuI	CTGAAG	2 cut(s)	47, 759
AfiI	CCNNNNNNNGG	3 cut(s)	163, 240, 272
AgsI	TTSAA	3 cut(s)	310, 401, 664
AjnI	CCWGG	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	7 cut(s)	25, 31, 79, 121, 412, 549, 558
AluI	AGCT	7 cut(s)	25, 31, 79, 121, 412, 549, 558
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	642
AoxI	GGCC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	61, 109, 642
AsuHPI	GGTGA	2 cut(s)	287, 788
AvaII	GGWCC	2 cut(s)	61, 109
AxyI	CCTNAGG	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbsI	GAAGAC	2 cut(s)	425, 777
Bbv12I	GWGCWC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	98, 782
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	61, 109
BmgT120I	GGNCC	3 cut(s)	61, 109, 642
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	2 cut(s)	322, 394
BpiI	GAAGAC	2 cut(s)	425, 777
Bpu10I	CCTNAGC	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 623, 653
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 240, 272
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	144
Bse21I	CCTNAGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	69
BseGI	GGATG	4 cut(s)	262, 352, 733, 790
BseLI	CCNNNNNNNGG	3 cut(s)	163, 240, 272
BseMII	CTCAG	3 cut(s)	248, 531, 548
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	163, 240, 272
BsnI	GGCC	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	129, 295, 634
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	643
BspCNI	CTCAG	3 cut(s)	249, 532, 547
BspDI	ATCGAT	1 cut(s)	69
BspHI	TCATGA	2 cut(s)	508, 604
BspPI	GGATC	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	3 cut(s)	129, 295, 634
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	776
Bst6I	CTCTTC	2 cut(s)	693, 705
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	257, 534, 540
BstF5I	GGATG	4 cut(s)	262, 352, 733, 790
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	132, 298, 637
BstMBI	GATC	3 cut(s)	129, 295, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV2I	GAAGAC	2 cut(s)	425, 777
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	643
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	262, 352, 733, 790
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	2 cut(s)	508, 604
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	61, 109, 642
ClaI	ATCGAT	1 cut(s)	69
CviAII	CATG	3 cut(s)	509, 605, 668
DdeI	CTNAG	3 cut(s)	257, 534, 540
DpnI	GATC	3 cut(s)	131, 297, 636
DpnII	GATC	3 cut(s)	129, 295, 634
Eam1104I	CTCTTC	2 cut(s)	693, 705
EarI	CTCTTC	2 cut(s)	693, 705
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	61, 109
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	47, 759
Eco81I	CCTNAGG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	512, 608, 671
FaiI	YATR	6 cut(s)	177, 201, 491, 510, 606, 669
FatI	CATG	3 cut(s)	508, 604, 667
FbaI	TGATCA	1 cut(s)	295
FokI	GGATG	3 cut(s)	249, 359, 740
FriOI	GRGCYC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	643
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	512, 608, 671
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	2 cut(s)	246, 575
HindII	GTYRAC	2 cut(s)	246, 575
HindIII	AAGCTT	2 cut(s)	29, 410
HinfI	GANTC	3 cut(s)	259, 601, 734
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	287, 788
Hpy166II	GTNNAC	3 cut(s)	246, 278, 575
Hpy188I	TCNGA	3 cut(s)	37, 61, 739
Hpy188III	TCNNGA	5 cut(s)	233, 256, 326, 509, 605
Hpy8I	GTNNAC	3 cut(s)	246, 278, 575
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	3 cut(s)	257, 534, 540
Hsp92II	CATG	3 cut(s)	512, 608, 671
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	129, 295, 634
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	2 cut(s)	322, 394
MaeIII	GTNAC	2 cut(s)	359, 442
MalI	GATC	3 cut(s)	131, 297, 636
MboI	GATC	3 cut(s)	129, 295, 634
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	268, 728
MseI	TTAA	4 cut(s)	245, 342, 504, 627
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeII	GATC	3 cut(s)	129, 295, 634
NlaIII	CATG	3 cut(s)	512, 608, 671
PagI	TCATGA	2 cut(s)	508, 604
PfeI	GAWTC	1 cut(s)	601
PfoI	TCCNGGA	1 cut(s)	156
PleI	GAGTC	2 cut(s)	267, 728
PpsI	GAGTC	2 cut(s)	267, 728
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	3 cut(s)	61, 109, 642
PsuI	RGATCY	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	245, 342, 504, 627
Sau3AI	GATC	3 cut(s)	129, 295, 634
Sau96I	GGNCC	3 cut(s)	61, 109, 642
SchI	GAGTC	2 cut(s)	268, 728
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	322, 394
SinI	GGWCC	2 cut(s)	61, 109
SmiMI	CAYNNNNRTG	1 cut(s)	69
SsiI	CCGC	1 cut(s)	617
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	776
TaqI	TCGA	4 cut(s)	69, 93, 123, 690
TaqII	GACCGA	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	4 cut(s)	245, 342, 504, 627
Tru9I	TTAA	4 cut(s)	245, 342, 504, 627
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	453, 593, 711, 723, 783
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	61, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.