Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

28017584 .. 28020059

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTCGCGGACAAGAGCAAGAAGTCGAAAATTGAAGAGAAAGGCGAAGAAGAAAACTTGGAGCAAATCGACGCAGAGCTTGTTCTCTCAATTGAGAAGCTTCAGGAGATTCAAGACGACCTCGAGAAGATTAACGAAAAGGCCAGTGACGAGGTCTTGGAAGTAGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACAAGCGCAATGAAGTTATCCAATCGATTCCTGGCTTTTGGATGACTGCTTTTTTGAGTCATCCTGCCTTAGGCGACCTCTTGACTGAAGAAGACCAAAAGATTTTTAAGTACTTGAACTCTCTGGAAGTGGAGGATGCCAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCACTTCAAACCCGTTCTTTGAGGATGCCAAGCTTACCAAGACATTTACTTTCCTTGAAGAAGGAACAACAAAAATCACTGCAACTCCTATCAAATGGAAGGAGGGCAAGGGCTTGCCAAATGGAGTGAACCATGATGATAAGAAAGGAAATAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTTGGTTTACTGATGCTCAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTGATATTATCAAGGAAGATCTCTGGTCCAACCCTCTCACCTACTTCAACAATGATGCTGATGAAGAGGATTTTGATGGAGATGATGATGGTGACGAAGAGGGAGAAGAAGACGATGACGATGAAGAGGAGGAAGATGGTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

256

Amino Acids

29.42

Weight (kDa)

4.23

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	31 - 75	6.2e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	75 - 215	3.1e-25	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	86, 309
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	35, 113, 319, 387, 437, 670
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	79, 100, 412
AluI	AGCT	3 cut(s)	79, 100, 412
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	652, 725
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	271
BbsI	GAAGAC	2 cut(s)	300, 738
BccI	CCATC	3 cut(s)	692, 704, 752
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	640
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	5 cut(s)	328, 394, 565, 583, 667
BpiI	GAAGAC	2 cut(s)	300, 738
Bsa29I	ATCGAT	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	144
Bse21I	CCTNAGG	1 cut(s)	271
Bse3DI	GCAATG	2 cut(s)	217, 539
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	227
BseGI	GGATG	5 cut(s)	249, 262, 343, 409, 607
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	2 cut(s)	217, 539
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	563, 764
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	143
BspDI	ATCGAT	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	610
BsrDI	GCAATG	2 cut(s)	217, 539
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	640
Bst2UI	CCWGG	1 cut(s)	234
Bst6I	CTCTTC	4 cut(s)	30, 681, 714, 741
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	5 cut(s)	249, 262, 343, 409, 607
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	643
BstMBI	GATC	1 cut(s)	640
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	300, 738
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	227
BtsCI	GGATG	5 cut(s)	249, 262, 343, 409, 607
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	151, 456
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	648
ClaI	ATCGAT	1 cut(s)	227
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	512, 611
CviJI	RGCY	6 cut(s)	79, 100, 143, 237, 412, 492
CviKI_1	RGCY	6 cut(s)	79, 100, 143, 237, 412, 492
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
Eam1104I	CTCTTC	4 cut(s)	30, 681, 714, 741
EarI	CTCTTC	4 cut(s)	30, 681, 714, 741
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	2 cut(s)	86, 309
Eco81I	CCTNAGG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	515, 614
FaiI	YATR	6 cut(s)	177, 201, 368, 513, 585, 612
FatI	CATG	2 cut(s)	511, 610
FokI	GGATG	5 cut(s)	249, 256, 350, 416, 614
GlaI	GCGC	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	515, 614
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	98, 410
HinfI	GANTC	4 cut(s)	109, 229, 259, 607
HphI	GGTGA	2 cut(s)	652, 725
Hpy166II	GTNNAC	2 cut(s)	508, 570
Hpy188III	TCNNGA	7 cut(s)	104, 113, 124, 283, 326, 357, 611
Hpy8I	GTNNAC	2 cut(s)	508, 570
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	434, 472
HpyCH4IV	ACGT	2 cut(s)	180, 535
HpyCH4V	TGCA	2 cut(s)	461, 539
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	2 cut(s)	180, 535
Hsp92II	CATG	2 cut(s)	515, 614
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	1 cut(s)	61
LweI	GCATC	5 cut(s)	328, 394, 565, 583, 667
MaeII	ACGT	2 cut(s)	180, 535
MaeIII	GTNAC	2 cut(s)	146, 713
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	2 cut(s)	30, 90
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	675
MseI	TTAA	2 cut(s)	132, 309
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	8
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	2 cut(s)	515, 614
NmuCI	GTSAC	2 cut(s)	146, 713
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	610
PfeI	GAWTC	3 cut(s)	109, 229, 607
PflFI	GACNNNGTC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	132, 309
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	1 cut(s)	648
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	5 cut(s)	328, 394, 565, 583, 667
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	30, 90
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	2 cut(s)	183, 538
TaqI	TCGA	4 cut(s)	26, 69, 123, 227
TasI	AATT	2 cut(s)	30, 90
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	109, 229, 607
Tru1I	TTAA	2 cut(s)	132, 309
Tru9I	TTAA	2 cut(s)	132, 309
TscAI	CASTG	2 cut(s)	151, 463
TseFI	GTSAC	2 cut(s)	146, 713
Tsp45I	GTSAC	2 cut(s)	146, 713
TspDTI	ATGAA	4 cut(s)	228, 599, 699, 759
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	151, 463
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XhoI	CTCGAG	1 cut(s)	122
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.