FvH4_6g48871

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003408
Physical Location & Seq
Reverse (-)
36702034 .. 36704790
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48871.t1

Sequence Viewer

Length: 756 bp
ATGGCGAAGAAGGCCAAGATCACTGACAGAGTTCCGGAGCAGAACGACGCCGACGACGATCACGTCGACGGCGAGCTCGTGGTTTCCATCGAGAAGTTGCAGGAGGCTCAGGACGACCTCGAGAAGGTTAACGAAGAAGCCAGTGACAAGGTATTGGAAGTTGAGCAGAAGTATAATGAGATCCGCAGACCTGTCTATCTGAAACGGAATGAAATAATAAAAACCATTCCTGACTTCTGGTTAATTGCTTTCCTTAGCCATCCTGCATTAGGCGATCTATTGAGCAATGAAGACAAGAAGATCTTCAAGTACTTATATTCTCTTGATGTGGAGGACTTCAAAGATGTTAAGTCAGGTTATGCTATCAGATTTAACTTTAACGAGAATCCTTATTTTGAAGATACAAAGCTAACTAAAACCTTCACATTCTTTGATGATGGGACAACTAAAATTGTCGGCACCGCCATCAAATGGAAGGAGGACATGGGTGTTGCAAATGGAGTCAAACACGAGAAAAAGGGAAACAAACGACCATCTTCTGAGGAGAGCTTCTTCAGATGGTTTAGCGAAACCGAACAGAAAGATATAGCTGAGTTTCAGGATGAGGTGGCAGAGATAATTAAGGAGGATTTATGGCCCAATCCTCTGAAGTACTTCAACAATGAGGCTGATGAAGAGGAATCTGAAGGTGATGAAGAGGAGAATGGTGATGAGGATGACAATGATCGGGAAGAAGACACTGAGGGGGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

252

Amino Acids

29.26

Weight (kDa)

4.37

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 74 - 221 1.5e-25 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 471
AccI GTMKAC 1 cut(s) 66
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 2 cut(s) 184, 462
AclWI GGATC 1 cut(s) 175
AcuI CTGAAG 3 cut(s) 538, 668, 705
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 311, 653
AfiI CCNNNNNNNGG 3 cut(s) 124, 269, 471
AgsI TTSAA 4 cut(s) 307, 340, 398, 658
AjiI CACGTC 1 cut(s) 64
AluBI AGCT 4 cut(s) 76, 409, 549, 590
AluI AGCT 4 cut(s) 76, 409, 549, 590
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 2 cut(s) 12, 635
Asp700I GAANNNNTTC 2 cut(s) 302, 653
AspS9I GGNCC 1 cut(s) 636
AsuHPI GGTGA 2 cut(s) 701, 719
AvaI CYCGRG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 78
BauI CACGAG 2 cut(s) 77, 509
BbsI GAAGAC 2 cut(s) 297, 741
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 6 cut(s) 95, 267, 431, 473, 541, 552
BceAI ACGGC 1 cut(s) 85
BglII AGATCT 1 cut(s) 300
BmcAI AGTACT 2 cut(s) 311, 653
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 636
BmiI GGNNCC 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 297, 741
Bpu10I CCTNAGC 2 cut(s) 108, 254
BsaHI GRCGYC 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 269, 471
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 34
BseGI GGATG 3 cut(s) 259, 607, 721
BseLI CCNNNNNNNGG 3 cut(s) 124, 269, 471
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 4 cut(s) 122, 531, 582, 732
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 557, 713
BshFI GGCC 2 cut(s) 14, 637
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 124, 269, 471
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 2 cut(s) 14, 637
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 6 cut(s) 18, 58, 180, 274, 300, 724
BspACI CCGC 2 cut(s) 184, 462
BspANI GGCC 2 cut(s) 14, 637
BspCNI CTCAG 4 cut(s) 121, 532, 583, 733
BspEI TCCGGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 141
BssMI GATC 6 cut(s) 18, 58, 180, 274, 300, 724
BssNI GRCGYC 1 cut(s) 48
BssSI CACGAG 2 cut(s) 77, 509
Bst2BI CACGAG 2 cut(s) 77, 509
Bst6I CTCTTC 2 cut(s) 669, 690
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 5 cut(s) 108, 254, 540, 591, 741
BstENI CCTNNNNNAGG 2 cut(s) 122, 267
BstF5I GGATG 3 cut(s) 259, 607, 721
BstKTI GATC 6 cut(s) 21, 61, 183, 277, 303, 727
BstMBI GATC 6 cut(s) 18, 58, 180, 274, 300, 724
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV2I GAAGAC 2 cut(s) 297, 741
BstX2I RGATCY 2 cut(s) 180, 300
BstYI RGATCY 2 cut(s) 180, 300
BsuRI GGCC 2 cut(s) 14, 637
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 3 cut(s) 259, 607, 721
BtsIMutI CAGTG 3 cut(s) 21, 148, 738
Cac8I GCNNGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 636
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 310, 652
CviAII CATG 1 cut(s) 484
CviQI GTAC 2 cut(s) 310, 652
DdeI CTNAG 5 cut(s) 108, 254, 540, 591, 741
DpnI GATC 6 cut(s) 20, 60, 182, 276, 302, 726
DpnII GATC 6 cut(s) 18, 58, 180, 274, 300, 724
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 2 cut(s) 669, 690
EarI CTCTTC 2 cut(s) 669, 690
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 3 cut(s) 538, 668, 705
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 76
EcoNI CCTNNNNNAGG 2 cut(s) 122, 267
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 1 cut(s) 487
FaiI YATR 6 cut(s) 174, 316, 360, 485, 587, 634
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 454
FatI CATG 1 cut(s) 483
FblI GTMKAC 1 cut(s) 66
FokI GGATG 3 cut(s) 246, 614, 728
FriOI GRGCYC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 14, 637
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 487
HincII GTYRAC 2 cut(s) 67, 130
HindII GTYRAC 2 cut(s) 67, 130
HinfI GANTC 3 cut(s) 385, 501, 680
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 701, 719
Hpy166II GTNNAC 2 cut(s) 67, 130
Hpy188I TCNGA 6 cut(s) 201, 368, 541, 557, 648, 685
Hpy188III TCNNGA 8 cut(s) 35, 91, 110, 121, 230, 323, 599, 728
Hpy8I GTNNAC 2 cut(s) 67, 130
Hpy99I CGWCG 5 cut(s) 50, 56, 59, 68, 71
HpyAV CCTTC 5 cut(s) 4, 118, 430, 469, 680
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 100, 266, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 5 cut(s) 108, 254, 540, 591, 741
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 487
Kpn2I TCCGGA 1 cut(s) 34
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 6 cut(s) 18, 58, 180, 274, 300, 724
LmnI GCTCC 1 cut(s) 37
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 143
MalI GATC 6 cut(s) 20, 60, 182, 276, 302, 726
MboI GATC 6 cut(s) 18, 58, 180, 274, 300, 724
MflI RGATCY 2 cut(s) 180, 300
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 3 cut(s) 243, 450, 618
MlyI GAGTC 1 cut(s) 510
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 2 cut(s) 302, 653
MseI TTAA 6 cut(s) 129, 242, 348, 372, 378, 621
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 6 cut(s) 18, 58, 180, 274, 300, 724
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 6 cut(s) 51, 54, 60, 63, 69, 75
PdmI GAANNNNTTC 2 cut(s) 302, 653
PfeI GAWTC 2 cut(s) 385, 680
PflMI CCANNNNNTGG 1 cut(s) 471
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 636
PsuI RGATCY 2 cut(s) 180, 300
RsaI GTAC 2 cut(s) 311, 653
RsaNI GTAC 2 cut(s) 310, 652
SacI GAGCTC 1 cut(s) 78
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 6 cut(s) 129, 242, 348, 372, 378, 621
Sau3AI GATC 6 cut(s) 18, 58, 180, 274, 300, 724
Sau96I GGNCC 1 cut(s) 636
ScaI AGTACT 2 cut(s) 311, 653
SchI GAGTC 1 cut(s) 510
SduI GDGCHC 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 119
SgrDI CGTCGACG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 243, 450, 618
SsiI CCGC 2 cut(s) 184, 462
SstI GAGCTC 1 cut(s) 78
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 66, 90, 120
TasI AATT 3 cut(s) 243, 450, 618
TatI WGTACW 2 cut(s) 309, 651
TfiI GAWTC 2 cut(s) 385, 680
Tru1I TTAA 6 cut(s) 129, 242, 348, 372, 378, 621
Tru9I TTAA 6 cut(s) 129, 242, 348, 372, 378, 621
TscAI CASTG 3 cut(s) 28, 148, 745
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 225, 303, 687, 708
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 3 cut(s) 28, 148, 745
Van91I CCANNNNNTGG 1 cut(s) 471
XagI CCTNNNNNAGG 2 cut(s) 122, 267
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 2 cut(s) 302, 653
ZrmI AGTACT 2 cut(s) 311, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.