Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002611.1

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Forward (+)

27284 .. 30587

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002611.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggtggcggacaaggcgaagaaggccaagctcgccgagagagctccggaggagaaccacgacgccgatcagattgacggcgacctcgtactttccatcgagaagttgcaggaggctcaagacgacctcgagaaggttaatgaagaagccagtgacaaggtgttggaagttgagcagaagtataatgtgatacgcagaccggtctatttgaaacggaatgaaataataaaaaccattcctgacttctggctaactgctttccttagccatcctgcactaagcgatctattgagcgaggaagaccagaagatcttcaagtatttaagttctcttgatgtggaggacttcaaagatgttaagtcaggttatgctatcagatttaactttaacgagaacccttattttgaagatacaaagctgactaaaaccttcacattctttgatgatgggacaactaaaattgctggcaccaccatcaagtggaaggagggcatgggtgtagcaaatggagtcaatcacgggaaaaagggaaacaaacgaccacctgctgaggagagcttcttcagttggtttagtgaaactgagcagaaagacatagctgagtttcaggatgaggtggcagagataattaaggaggatttatggcccaatcctctaaagtacttcaacaatgaggcagatgaagaggactctgaaggtgatgaagaggagaatggtgatgatgatgacaataatggagaagaagatactgagggagatagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

254

Amino Acids

29.1

Weight (kDa)

4.33

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	547, 714
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	90, 662
AfiI	CCNNNNNNNGG	2 cut(s)	133, 480
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	211, 316, 349, 407, 667
AluBI	AGCT	6 cut(s)	31, 44, 418, 558, 599, 762
AluI	AGCT	6 cut(s)	31, 44, 418, 558, 599, 762
Alw21I	GWGCWC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	2 cut(s)	24, 644
AsiGI	ACCGGT	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	710, 728
AvaI	CYCGRG	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	46
BbvCI	CCTCAGC	1 cut(s)	549
BccI	CCATC	4 cut(s)	104, 276, 440, 482
BceAI	ACGGC	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	2 cut(s)	263, 549
BpuEI	CTTGAG	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	63
BsaWI	WCCGGW	2 cut(s)	46, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 480
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	46
BseGI	GGATG	2 cut(s)	268, 616
BseLI	CCNNNNNNNGG	2 cut(s)	133, 480
BseMII	CTCAG	4 cut(s)	540, 573, 591, 741
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	3 cut(s)	65, 566, 722
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	26, 646
BshNI	GGYRCC	1 cut(s)	467
BshTI	ACCGGT	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	47, 200
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	133, 480
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	26, 646
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	67, 283, 309
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	26, 646
BspCNI	CTCAG	4 cut(s)	541, 574, 592, 742
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	199
BssMI	GATC	3 cut(s)	67, 283, 309
BssNI	GRCGYC	1 cut(s)	63
Bst6I	CTCTTC	2 cut(s)	678, 699
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	33, 466
BstDEI	CTNAG	6 cut(s)	263, 278, 549, 582, 600, 750
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	268, 616
BstKTI	GATC	3 cut(s)	70, 286, 312
BstMBI	GATC	3 cut(s)	67, 283, 309
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 23, 32, 41
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	26, 646
BtsCI	GGATG	2 cut(s)	268, 616
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	33, 466
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	645
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	89, 661
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	2 cut(s)	89, 661
DdeI	CTNAG	6 cut(s)	263, 278, 549, 582, 600, 750
DpnI	GATC	3 cut(s)	69, 285, 311
DpnII	GATC	3 cut(s)	67, 283, 309
Eam1104I	CTCTTC	2 cut(s)	678, 699
EarI	CTCTTC	2 cut(s)	678, 699
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	547, 714
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	1 cut(s)	496
FaiI	YATR	5 cut(s)	183, 369, 494, 596, 643
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	1 cut(s)	492
FokI	GGATG	2 cut(s)	255, 623
FriOI	GRGCYC	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	26, 646
HapII	CCGG	2 cut(s)	47, 200
HgaI	GACGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	2 cut(s)	510, 689
HpaII	CCGG	2 cut(s)	47, 200
HphI	GGTGA	2 cut(s)	710, 728
Hpy188I	TCNGA	3 cut(s)	72, 377, 694
Hpy188III	TCNNGA	7 cut(s)	47, 100, 119, 130, 239, 332, 608
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	5 cut(s)	16, 127, 439, 478, 689
HpyCH4V	TGCA	2 cut(s)	109, 275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 23, 32, 41
HpyF3I	CTNAG	6 cut(s)	263, 278, 549, 582, 600, 750
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	67, 283, 309
LmnI	GCTCC	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	69, 285, 311
MboI	GATC	3 cut(s)	67, 283, 309
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	459, 627
MlyI	GAGTC	2 cut(s)	519, 683
MmeI	TCCRAC	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
MspI	CCGG	2 cut(s)	47, 200
MwoI	GCNNNNNNNGC	4 cut(s)	14, 23, 32, 41
NdeII	GATC	3 cut(s)	67, 283, 309
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	469
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	480
PinAI	ACCGGT	1 cut(s)	199
PleI	GAGTC	2 cut(s)	518, 683
PpsI	GAGTC	2 cut(s)	518, 683
Psp124BI	GAGCTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	90, 662
RsaNI	GTAC	2 cut(s)	89, 661
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
Sau3AI	GATC	3 cut(s)	67, 283, 309
Sau96I	GGNCC	1 cut(s)	645
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	2 cut(s)	519, 683
SduI	GDGCHC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	117, 128
SmoI	CTYRAG	2 cut(s)	117, 128
Sse9I	AATT	2 cut(s)	459, 627
SsiI	CCGC	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	46
TaqI	TCGA	2 cut(s)	99, 129
TasI	AATT	2 cut(s)	459, 627
TatI	WGTACW	1 cut(s)	660
Tru1I	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
Tru9I	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	156, 234, 696, 717
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.