Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

28840141 .. 28844398

Gene Structure 4258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1198400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGGCTGACAAGGGCAAGAAGCTGAAGCTCTCAGAGAAACCCGAGGACGAGAACGCTGACCACATCGATGAGAAGCTCGTCCTCTCCATCGAGAAGTTGCAGGAGGTCCAAGACGAGCTCGAAAAGATCAATGAGGAAGCCAGTGATAAAGTCCTGGAAGTGGAGCAGAAGTATAATGAGGTACGCAGGCCGGTCTACGATAAGCGAAATGATATCATTAAGTCCATCCCTGACTTTTGGTTAACTGCTTTCTTGAGCCATCCCGCGCTCAGTGAACTTTTGACTGAAGAGGATCAAAAGATTTTCAAGCATCTAACTTCTCTGGAAGTTGAGGACTTCAAGGACGTGAAATCTGGTTACGCCATCACGTTTGTGTTCAGCCCCAATCCTTATTTTGAAGACACAAAGCTTACAAAGACCTTTACTTTTCTTGATGAAGCAACAAAAGTTACTGCTACATCCATAAAATGGAAAGAGGGAATGGGCATTCCTAATGGAGTTAATCATGATAAGAAAGGGAACAAGCGACCTCAGGTTGAGGAAAGCTTCTTTAGCTGGTTCAGTGATAGTCAGCACAAAGATATTTTGGAGGATGAGATTCATGACGAGATTGCGGAGGTTATTAAGGAGGATTTGTGGCCCAATCCTCTTACTTATTTCAACCATGAGGCTGATGATGATGAGGAATTTGATGATGAGGAAGTTGATGAAGAGGGAAAGAATGAAGACGACGACTCTGACGATGACGAGGATGACCAAGATGATGATGAAGATGGTGATGAGGATGACGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016444 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

267

Amino Acids

30.92

Weight (kDa)

4.22

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	31 - 75	3.2e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	75 - 223	3.6e-29	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	267, 617
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	2 cut(s)	47, 309
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	163, 471
AgsI	TTSAA	4 cut(s)	310, 343, 401, 664
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	7 cut(s)	25, 31, 79, 121, 412, 549, 558
AluI	AGCT	7 cut(s)	25, 31, 79, 121, 412, 549, 558
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	2 cut(s)	191, 641
ApoI	RAATTY	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	109, 642
AsuHPI	GGTGA	1 cut(s)	791
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	408, 735
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	5 cut(s)	98, 236, 270, 374, 770
BciT130I	CCWGG	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	109, 642
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	408, 735
BpuEI	CTTGAG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 471
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	144
Bse21I	CCTNAGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	6 cut(s)	228, 262, 461, 601, 760, 793
BseLI	CCNNNNNNNGG	2 cut(s)	163, 471
BseMII	CTCAG	3 cut(s)	48, 286, 548
BseNI	ACTGG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	193, 643
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	163, 471
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	193, 643
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	129, 295
BspACI	CCGC	2 cut(s)	267, 617
BspANI	GGCC	2 cut(s)	193, 643
BspCNI	CTCAG	3 cut(s)	47, 285, 547
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	508, 604
BspPI	GGATC	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	129, 295
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	285, 708
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	34, 272, 534
BstF5I	GGATG	6 cut(s)	228, 262, 461, 601, 760, 793
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	132, 298
BstMBI	GATC	2 cut(s)	129, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	269
BstV2I	GAAGAC	2 cut(s)	408, 735
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	193, 643
BsuTUI	ATCGAT	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	6 cut(s)	228, 262, 461, 601, 760, 793
BtsIMutI	CAGTG	3 cut(s)	151, 280, 571
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	2 cut(s)	508, 604
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	109, 642
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	3 cut(s)	509, 605, 668
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	3 cut(s)	34, 272, 534
DpnI	GATC	2 cut(s)	131, 297
DpnII	GATC	2 cut(s)	129, 295
Eam1104I	CTCTTC	2 cut(s)	285, 708
EarI	CTCTTC	2 cut(s)	285, 708
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	47, 309
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	512, 608, 671
FaiI	YATR	5 cut(s)	177, 467, 510, 606, 669
FatI	CATG	3 cut(s)	508, 604, 667
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	198
FokI	GGATG	5 cut(s)	215, 249, 448, 608, 767
FriOI	GRGCYC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	193, 643
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	512, 608, 671
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	2 cut(s)	410, 547
HinfI	GANTC	2 cut(s)	601, 737
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	3 cut(s)	199, 246, 278
Hpy188I	TCNGA	2 cut(s)	37, 742
Hpy188III	TCNNGA	6 cut(s)	94, 256, 326, 434, 509, 605
Hpy8I	GTNNAC	3 cut(s)	199, 246, 278
Hpy99I	CGWCG	1 cut(s)	737
HpyCH4IV	ACGT	2 cut(s)	348, 371
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	3 cut(s)	34, 272, 534
HpySE526I	ACGT	2 cut(s)	348, 371
Hsp92II	CATG	3 cut(s)	512, 608, 671
HspAI	GCGC	1 cut(s)	269
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	129, 295
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	2 cut(s)	348, 371
MaeIII	GTNAC	2 cut(s)	359, 451
MalI	GATC	2 cut(s)	131, 297
MboI	GATC	2 cut(s)	129, 295
MboII	GAAGA	5 cut(s)	302, 413, 725, 740, 785
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	689
MlyI	GAGTC	1 cut(s)	731
MseI	TTAA	4 cut(s)	222, 245, 504, 627
MslI	CAYNNNNRTG	2 cut(s)	69, 374
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeII	GATC	2 cut(s)	129, 295
NlaIII	CATG	3 cut(s)	512, 608, 671
OliI	CACNNNNGTG	1 cut(s)	374
PagI	TCATGA	2 cut(s)	508, 604
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	471
PfoI	TCCNGGA	1 cut(s)	156
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	109, 642
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	69, 374
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	222, 245, 504, 627
Sau3AI	GATC	2 cut(s)	129, 295
Sau96I	GGNCC	2 cut(s)	109, 642
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	69, 374
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	1 cut(s)	689
SsiI	CCGC	2 cut(s)	267, 617
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	156
TaiI	ACGT	2 cut(s)	351, 374
TaqI	TCGA	3 cut(s)	69, 93, 123
TasI	AATT	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	4 cut(s)	222, 245, 504, 627
Tru9I	TTAA	4 cut(s)	222, 245, 504, 627
TscAI	CASTG	3 cut(s)	151, 280, 571
TspDTI	ATGAA	5 cut(s)	453, 593, 726, 741, 786
TspRI	CASTG	3 cut(s)	151, 280, 571
Van91I	CCANNNNNTGG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.