pycom111g04130

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0003408
Physical Location & Seq
Reverse (-)
2492995 .. 2496239
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04130.9

Sequence Viewer

Length: 732 bp
ATGGTGGCGGACGCGGCGAAGATGGCCAAGCTCACTGAGCGAGCTCCGGAGGACGACGCCTATCACTTGGACAAGGAGTTCGTGATTTCCGTTGAGAAGTTGCAGGAGGTTCAGGATGAACTCGACAAGGTTGATGGCGAAGAGAGTGACAAGATTTTGGAAGTTGAGCAAGAGTATAACGAGATACGCAGGCCCGTCTATGTGAAACGGAATGAGATCATAAAAACCATTCCTGACTTTTGGCTAACTTCTCTCATGAGCCATCCTGTTCTTTGTGATATTTTGAGTGAAGAAGACCGGAAGATATTCAAGTATTTAAAGTCTGTTGATGTGGTGGACTTCAAAGATGATAAGACGTTAGGATACTCCGTCACATTCAACTTTAACGACAATCCTTATTTTGAAAATACAAAGTTGACGAAAACTTTTACATTCGTTGATGGTGAGACAACAAGAATTACTGGTACTCCCATCAAATGGAAGGAGGGCATGGGTCTTGTGAATGGAGTTACCAAAGAGAAAAATGGAAAGAAACGACCACTTGTTGATGAGAGCTTCTTCAGTTTGTTTGACTCACCTCTTGAACATGACGAGGTGGTAGAGATAATTAAGAACGATTTATGGCCCAATCCTCTAAAGTATTTTAATAACGAGGCCGATGAAGAGGATTCTGAAGATGATGAAATGGACAATGGTGACGAAGAGGAAGACGATGACGAGGAAGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

244

Amino Acids

28.26

Weight (kDa)

4.29

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 477
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 2 cut(s) 8, 14
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 2 cut(s) 544, 693
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 477
AgsI TTSAA 5 cut(s) 310, 343, 379, 404, 584
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 4 cut(s) 31, 44, 555, 729
AluI AGCT 4 cut(s) 31, 44, 555, 729
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 4 cut(s) 24, 191, 623, 654
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 192, 624
AsuHPI GGTGA 3 cut(s) 455, 567, 707
BalI TGGCCA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 300, 714
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 5 cut(s) 16, 128, 270, 434, 479
BciVI GTATCC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 730
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 192, 624
BpiI GAAGAC 2 cut(s) 300, 714
BsaHI GRCGYC 1 cut(s) 57
BsaWI WCCGGW 2 cut(s) 46, 297
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 46
BseGI GGATG 2 cut(s) 121, 262
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 466
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 4 cut(s) 26, 193, 625, 656
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 47, 298
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 4 cut(s) 26, 193, 625, 656
Bsp1286I GDGCHC 1 cut(s) 46
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 2 cut(s) 8, 14
BspANI GGCC 4 cut(s) 26, 193, 625, 656
BspCNI CTCAG 1 cut(s) 28
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 466
BssMI GATC 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 57
Bst6I CTCTTC 3 cut(s) 135, 657, 696
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 42, 191
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 121, 262
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 37
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 2 cut(s) 300, 714
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 4 cut(s) 26, 193, 625, 656
BtsCI GGATG 2 cut(s) 121, 262
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 42, 191
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 192, 624
CseI GACGC 2 cut(s) 20, 65
Csp6I GTAC 1 cut(s) 465
CviAII CATG 3 cut(s) 256, 490, 587
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 3 cut(s) 135, 657, 696
EarI CTCTTC 3 cut(s) 135, 657, 696
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 544, 693
EcoICRI GAGCTC 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 3 cut(s) 259, 493, 590
FaiI YATR 7 cut(s) 177, 201, 221, 257, 491, 588, 622
FatI CATG 3 cut(s) 255, 489, 586
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 128, 249
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 730
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 4 cut(s) 26, 193, 625, 656
HapII CCGG 2 cut(s) 47, 298
HgaI GACGC 2 cut(s) 20, 65
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 259, 493, 590
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 2 cut(s) 572, 668
HpaII CCGG 2 cut(s) 47, 298
HphI GGTGA 3 cut(s) 455, 567, 707
Hpy166II GTNNAC 2 cut(s) 337, 417
Hpy188I TCNGA 1 cut(s) 673
Hpy188III TCNNGA 6 cut(s) 47, 82, 113, 233, 256, 581
Hpy8I GTNNAC 2 cut(s) 337, 417
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 475
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 37
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 356
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 259, 493, 590
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 8 cut(s) 60, 89, 98, 175, 246, 279, 311, 447
MaeI CTAG 1 cut(s) 730
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 4 cut(s) 146, 370, 508, 695
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 456, 606
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 566
Mox20I TGGCCA 1 cut(s) 26
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 26
MseI TTAA 4 cut(s) 317, 384, 609, 645
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 2 cut(s) 47, 298
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 37
NdeII GATC 1 cut(s) 216
NlaIII CATG 3 cut(s) 259, 493, 590
NmuCI GTSAC 3 cut(s) 146, 370, 695
PagI TCATGA 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 668
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 192, 624
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 4 cut(s) 317, 384, 609, 645
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 192, 624
SchI GAGTC 1 cut(s) 566
SduI GDGCHC 1 cut(s) 46
SetI ASST 9 cut(s) 33, 46, 111, 132, 359, 557, 580, 597, 731
Sse9I AATT 2 cut(s) 456, 606
SsiI CCGC 2 cut(s) 8, 14
SspMI CTAG 1 cut(s) 730
SstI GAGCTC 1 cut(s) 46
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 456, 606
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 4 cut(s) 317, 384, 609, 645
Tru9I TTAA 4 cut(s) 317, 384, 609, 645
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 3 cut(s) 146, 370, 695
Tsp45I GTSAC 3 cut(s) 146, 370, 695
TspDTI ATGAA 3 cut(s) 132, 675, 696
TspGWI ACGGA 3 cut(s) 79, 223, 358
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.