Prupe.3G268700_v2.0.a1

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003408
Physical Location & Seq
Forward (+)
25074598 .. 25078575
3978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G268700.2

Sequence Viewer

Length: 765 bp
ATGGTGGCGGACCAGGGGAAGAAGGCGAAGCTCACTGAGAGAGCTCCGGGGGACGAGACTGATCACATTGATAGTGAGCTTGTCCTTAACATTGAGAAGTTGCAGGAGTTTCAAGATGACCTTGACAAGGTTAATGAAGAAGAGGGTGACAAACTGATGGAACTTGAACAAAAGTTTAATGAGATACGCAGGCCCATCTATTTGAAACGGAATGAGATAATAAAAACCATTCCCGACTTCTGGCTAACTTCTTTCATGAGCCATCCTGTGCTTTGTGATATTTTGACTGCAGAAGACCAGAAGATCTTCAAGTATTTAAATTCTCTTGATGTGGAGGACTTTAAAGATGATAAGACGTTAGGATACTCTATCACATTTAATTTTAATGAGAATCCTTATTTTCAAGATACAAAGCTGACTAAAACCTTTGCATTCGTTGATGATGAGACAACTAAGGTTACTGGTACTACCATCAAATGGAAGGAGGGCATGGGTTTTGCCAATGGAGTTCATGATGAGAAAAAAGGAAACAAACGACCACATGCTGAGCAGAGCTTCTTCAGTTGGTTTAATGAAAGTGAACAGGACGATATGGTTGGATTTCATGAAGAGATGGTAGAGATAATTAAGGACGACTTATGGCCCAATCCTCTCAAGTATTTCAATAATGAGGCCGATGAAGAGGATTCTGAAGGTGATGAAGATAATGAAATGGAGAATGGTGAGAATGATGATGAAGAAGACGATAAGGAGGGGGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

255

Amino Acids

29.67

Weight (kDa)

4.27

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 477
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 319
AcuI CTGAAG 2 cut(s) 544, 711
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 3 cut(s) 127, 240, 477
AgsI TTSAA 6 cut(s) 113, 167, 205, 310, 404, 664
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 6 cut(s) 31, 44, 79, 415, 555, 762
AluI AGCT 6 cut(s) 31, 44, 79, 415, 555, 762
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 50, 440
AoxI GGCC 3 cut(s) 191, 641, 672
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 10, 192, 642
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 3 cut(s) 158, 707, 734
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 300, 747
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 5 cut(s) 151, 203, 270, 479, 607
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 356
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 50, 440
BfmI CTRYAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 356
BglII AGATCT 1 cut(s) 303
BlpI GCTNAGC 1 cut(s) 546
Bme1390I CCNGG 2 cut(s) 14, 48
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 3 cut(s) 10, 192, 642
BmrFI CCNGG 2 cut(s) 14, 48
BpiI GAAGAC 2 cut(s) 300, 747
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 13, 47
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 240, 477
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 13, 47
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 127, 240, 477
BseMII CTCAG 2 cut(s) 27, 537
BseNI ACTGG 1 cut(s) 466
BshFI GGCC 3 cut(s) 193, 643, 674
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 127, 240, 477
BsmAI GTCTC 2 cut(s) 50, 440
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 3 cut(s) 193, 643, 674
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 61, 303
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 1 cut(s) 8
BspANI GGCC 3 cut(s) 193, 643, 674
BspCNI CTCAG 2 cut(s) 28, 538
BspHI TCATGA 3 cut(s) 255, 511, 604
BspMAI CTGCAG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 13, 47
BssMI GATC 2 cut(s) 61, 303
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 3 cut(s) 135, 603, 675
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 36, 453, 546
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 2 cut(s) 64, 306
BstMAI GTCTC 2 cut(s) 50, 440
BstMBI GATC 2 cut(s) 61, 303
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 12, 46
BstSFI CTRYAG 1 cut(s) 288
BstV2I GAAGAC 2 cut(s) 300, 747
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 193, 643, 674
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 3 cut(s) 255, 511, 604
Cfr13I GGNCC 3 cut(s) 10, 192, 642
Csp6I GTAC 1 cut(s) 465
CviAII CATG 5 cut(s) 256, 490, 512, 542, 605
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 3 cut(s) 36, 453, 546
DpnI GATC 2 cut(s) 63, 305
DpnII GATC 2 cut(s) 61, 303
DraI TTTAAA 2 cut(s) 318, 343
Eam1104I CTCTTC 3 cut(s) 135, 603, 675
EarI CTCTTC 3 cut(s) 135, 603, 675
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 544, 711
EcoICRI GAGCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 5 cut(s) 259, 493, 515, 545, 608
FaiI YATR 7 cut(s) 257, 491, 513, 543, 593, 606, 640
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 620, 652
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 255, 489, 511, 541, 604
FbaI TGATCA 1 cut(s) 61
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 46
HaeIII GGCC 3 cut(s) 193, 643, 674
HapII CCGG 1 cut(s) 47
Hin1II CATG 5 cut(s) 259, 493, 515, 545, 608
HinfI GANTC 2 cut(s) 391, 686
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 158, 707, 734
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 7 cut(s) 113, 233, 256, 326, 404, 512, 605
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 3 cut(s) 16, 475, 686
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 103, 290, 431
HpyF3I CTNAG 3 cut(s) 36, 453, 546
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 5 cut(s) 259, 493, 515, 545, 608
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 61, 303
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 9 cut(s) 26, 60, 89, 175, 226, 279, 311, 447, 569
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 146, 457
MalI GATC 2 cut(s) 63, 305
MboI GATC 2 cut(s) 61, 303
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 319, 379, 624
MmeI TCCRAC 1 cut(s) 577
MnlI CCTC 7 cut(s) 136, 328, 478, 660, 664, 676, 745
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 9 cut(s) 87, 132, 177, 317, 342, 378, 384, 570, 627
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 14, 48
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 1 cut(s) 14
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 61, 303
NlaIII CATG 5 cut(s) 259, 493, 515, 545, 608
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 545
PagI TCATGA 3 cut(s) 255, 511, 604
PctI GAATGC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 2 cut(s) 391, 686
PflMI CCANNNNNTGG 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 3 cut(s) 10, 192, 642
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 9 cut(s) 87, 132, 177, 317, 342, 378, 384, 570, 627
Sau3AI GATC 2 cut(s) 61, 303
Sau96I GGNCC 3 cut(s) 10, 192, 642
ScrFI CCNGG 2 cut(s) 14, 48
SduI GDGCHC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 10
SmiI ATTTAAAT 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 3 cut(s) 319, 379, 624
SsiI CCGC 1 cut(s) 8
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 12, 46
SwaI ATTTAAAT 1 cut(s) 318
TaiI ACGT 1 cut(s) 359
TasI AATT 3 cut(s) 319, 379, 624
TfiI GAWTC 2 cut(s) 391, 686
Tru1I TTAA 9 cut(s) 87, 132, 177, 317, 342, 378, 384, 570, 627
Tru9I TTAA 9 cut(s) 87, 132, 177, 317, 342, 378, 384, 570, 627
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 319
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.