Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003408

Physical Location & Seq

Genomic Coordinates Reverse (-)

3089328 .. 3093420

Gene Structure 4093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTGGCGGACGCGGCGAAGCAGCCCAAGCTCACTGAGCGAGCTCCGGAGGACGACGCCGATCACCTTGACAAGGAGCTCGTGCTCTCCGTCGAGAAGTTGCAGGAGGTTCAAGACGAACTCGACAAGGTTGATGATGAAGAGAATGACAAGGTTTTGGAAATTGAGCAAAAGTATAACGAGATACGCAGGCCCGTCTATGTGAAGCGGAATGAGATAATAAAAACCATTCCTGACTTTTGGCTAACTTCTTTCATGAGCCATCCTGTACTTTGTGATATTTTGAGTGCAGAAGACCAGAAGATTTTCAAGTGTTTAAAGTCTATTGATGTGGTGGACTTCAAAGATGATAAGACGATAGGATACTCCGTCACATTTAACTTTAATAACAACCCTTATTTTGAAGATACAAAGCTGACGAAAACTTTTACATATATTGATGGTGAGACAACAAAAATTACTGGTACTCCCGTCAAATGGAAGGAGGGCATGGGTCTTGCAAATGGAGTTACTGACGTGAAAAATGGAAAGAAACGACCACATGTTGATGAGAGCTTCTTCAGTTTGTTTAACGAAACTGAACATAAAGATATAGATGCGATTCATGATGAGGTGGTAGAGATAATTAAGAATGACTTATGGCCCAACCCTCTAAAGTATTTTAATAACGAGGCTGACGAGGAGGAGGTCGATGAAGAGGATTCTGAAGATGATGAAATGGAGAATGGTGACGAAGATGATGAAGACGACGATGACGAGGAAGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005811 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006337 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010608 GO:0010629 GO:0010639 GO:0010921 GO:0010923 GO:0010941 GO:0012505 GO:0016043 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0019888 GO:0022411 GO:0022607 GO:0030234 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031497 GO:0031498 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0032984 GO:0032986 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0034645 GO:0034728 GO:0035065 GO:0035067 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0042393 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043523 GO:0043524 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0048471 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0061013 GO:0065003 GO:0065004 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0098772 GO:1901214 GO:1901215 GO:1901360 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903311 GO:1903506 GO:1903507 GO:1905268 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

257

Amino Acids

29.69

Weight (kDa)

4.22

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18800 AT1G74560 AT1G74560
fragaria_vesca	FvH4_5g15130 FvH4_6g48871
malus_domestica	MD06G1191900.v1.1 MD09G1050000.v1.1 MD14G1198400.v1.1 MD17G1050400.v1.1
prunus_persica	Prupe.3G268700_v2.0.a1 Prupe.3G268700_v2.0.a1 Prupe.5G191400_v2.0.a1
pyrus_communis	pycom06g17010 pycom111g04130 pycom14g16490 pycom17g04540
rosa_chinensis	RchiOBHm_Chr2g0168701 RchiOBHm_Chr7g0181051
rosa_laevigata	RLG00000021802
rosa_multiflora	Rmu_sc0002611.1_g000007 Rmu_sc0007079.1_g000003 Rmu_sc0032521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272310
rosa_rugosa	Rorug02G0534700 Rorug06G0438600 Rorug06G0438700
rosa_samantha	Rh2AG605500 Rh2BG618500 Rh2CG586600 Rh2DG629000 Rh7AG039900 Rh7BG039300 Rh7CG041200 Rh7DG039500
rosa_wichuraiana	Rw2G050190 Rw7G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	3 cut(s)	8, 14, 208
AcuI	CTGAAG	2 cut(s)	544, 726
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	270, 466
AfiI	CCNNNNNNNGG	2 cut(s)	73, 477
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	4 cut(s)	113, 310, 343, 404
AjiI	CACGTC	1 cut(s)	517
AluBI	AGCT	6 cut(s)	31, 44, 79, 415, 555, 768
AluI	AGCT	6 cut(s)	31, 44, 79, 415, 555, 768
Alw21I	GWGCWC	3 cut(s)	46, 81, 87
Alw26I	GTCTC	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	2 cut(s)	191, 641
ApeKI	GCWGC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	192, 642
AsuHPI	GGTGA	3 cut(s)	56, 455, 740
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
BanII	GRGCYC	2 cut(s)	46, 81
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	300, 750
Bbv12I	GWGCWC	3 cut(s)	46, 81, 87
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	270, 434
BciVI	GTATCC	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	2 cut(s)	15, 23
BlsI	GCNGC	2 cut(s)	16, 24
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	192, 642
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	2 cut(s)	300, 750
BsaHI	GRCGYC	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 477
Bse1I	ACTGG	1 cut(s)	466
BseAI	TCCGGA	1 cut(s)	46
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	73, 477
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	695, 698
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	193, 643
BsiHKAI	GWGCWC	3 cut(s)	46, 81, 87
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	73, 477
BsmAI	GTCTC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	193, 643
Bsp1286I	GDGCHC	3 cut(s)	46, 81, 87
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	3 cut(s)	8, 14, 208
BspANI	GGCC	2 cut(s)	193, 643
BspCNI	CTCAG	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	2 cut(s)	255, 604
BsrI	ACTGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	135, 690
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	42, 191
BstDEI	CTNAG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 28, 37
BstNSI	RCATGY	1 cut(s)	545
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	2 cut(s)	300, 750
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	193, 643
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	42, 191
CciI	TCATGA	2 cut(s)	255, 604
Cfr13I	GGNCC	2 cut(s)	192, 642
CseI	GACGC	2 cut(s)	20, 65
Csp6I	GTAC	2 cut(s)	269, 465
CviAII	CATG	4 cut(s)	256, 490, 542, 605
CviQI	GTAC	2 cut(s)	269, 465
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DraI	TTTAAA	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	135, 690
EarI	CTCTTC	2 cut(s)	135, 690
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	2 cut(s)	44, 79
Eco24I	GRGCYC	2 cut(s)	46, 81
Eco53kI	GAGCTC	2 cut(s)	44, 79
Eco57I	CTGAAG	2 cut(s)	544, 726
EcoICRI	GAGCTC	2 cut(s)	44, 79
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoT38I	GRGCYC	2 cut(s)	46, 81
FaeI	CATG	4 cut(s)	259, 493, 545, 608
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FatI	CATG	4 cut(s)	255, 489, 541, 604
Fnu4HI	GCNGC	2 cut(s)	15, 23
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	2 cut(s)	46, 81
Fsp4HI	GCNGC	2 cut(s)	15, 23
FspBI	CTAG	1 cut(s)	769
GluI	GCNGC	2 cut(s)	15, 23
HaeIII	GGCC	2 cut(s)	193, 643
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	2 cut(s)	20, 65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	259, 493, 545, 608
HinfI	GANTC	2 cut(s)	601, 701
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	3 cut(s)	56, 455, 740
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	6 cut(s)	47, 94, 113, 233, 256, 605
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	3 cut(s)	59, 95, 752
HpyAV	CCTTC	1 cut(s)	475
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	3 cut(s)	103, 290, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 28, 37
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	259, 493, 545, 608
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	49, 76
LpnPI	CCDG	7 cut(s)	60, 89, 175, 246, 279, 311, 447
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	769
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	370, 508, 728
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	9 cut(s)	152, 305, 313, 416, 550, 707, 719, 746, 755
MhlI	GDGCHC	3 cut(s)	46, 81, 87
MluCI	AATT	3 cut(s)	162, 456, 624
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	6 cut(s)	317, 378, 384, 570, 627, 663
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	14, 28, 37
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	259, 493, 545, 608
NmuCI	GTSAC	2 cut(s)	370, 728
NspI	RCATGY	1 cut(s)	545
PagI	TCATGA	2 cut(s)	255, 604
PciI	ACATGT	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 675, 753
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	601, 701
PkrI	GCNGC	2 cut(s)	16, 24
PscI	ACATGT	1 cut(s)	541
Psp124BI	GAGCTC	2 cut(s)	46, 81
PspPI	GGNCC	2 cut(s)	192, 642
RsaI	GTAC	2 cut(s)	270, 466
RsaNI	GTAC	2 cut(s)	269, 465
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	2 cut(s)	46, 81
SaqAI	TTAA	6 cut(s)	317, 378, 384, 570, 627, 663
SatI	GCNGC	2 cut(s)	15, 23
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	192, 642
SduI	GDGCHC	3 cut(s)	46, 81, 87
SfaNI	GCATC	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	3 cut(s)	162, 456, 624
SsiI	CCGC	3 cut(s)	8, 14, 208
SspMI	CTAG	1 cut(s)	769
SstI	GAGCTC	2 cut(s)	46, 81
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	93, 123, 690
TasI	AATT	3 cut(s)	162, 456, 624
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	601, 701
Tru1I	TTAA	6 cut(s)	317, 378, 384, 570, 627, 663
Tru9I	TTAA	6 cut(s)	317, 378, 384, 570, 627, 663
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	2 cut(s)	370, 728
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	2 cut(s)	370, 728
TspDTI	ATGAA	6 cut(s)	153, 244, 593, 708, 729, 756
TspGWI	ACGGA	2 cut(s)	79, 358
TspRI	CASTG	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.